Wall clock time and date at job start Sat Apr 11 2020 06:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 119.99810 * 2 1 4 4 S 1.65600 * 120.00110 * 179.97438 * 2 1 3 5 5 O 1.42098 * 106.39962 * 336.45922 * 4 2 1 6 6 O 1.42100 * 106.40111 * 203.54195 * 4 2 1 7 7 C 1.76199 * 107.21677 * 89.99957 * 4 2 1 8 8 C 1.38253 * 120.00077 * 269.95135 * 7 4 2 9 9 C 1.38204 * 119.99863 * 179.97438 * 8 7 4 10 10 C 1.38261 * 120.00515 * 0.07163 * 9 8 7 11 11 C 1.38208 * 119.99533 * 359.95684 * 10 9 8 12 12 C 1.50701 * 119.99804 * 180.02562 * 11 10 9 13 13 N 1.46504 * 109.46856 * 270.01572 * 12 11 10 14 14 C 1.34781 * 119.99854 * 179.97438 * 13 12 11 15 15 O 1.21590 * 119.99689 * 0.02562 * 14 13 12 16 16 N 1.34771 * 119.99955 * 180.02562 * 14 13 12 17 17 C 1.46499 * 120.00043 * 180.02562 * 16 14 13 18 18 C 1.50699 * 109.47187 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00238 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99906 * 179.97438 * 18 17 16 21 21 N 1.31518 * 120.00106 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00088 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47091 * 59.99662 * 22 20 18 24 24 H 1.48494 * 109.47225 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47082 * 300.00207 * 22 20 18 26 26 C 1.38220 * 119.99875 * 90.00339 * 7 4 2 27 27 H 1.08993 * 109.47137 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47159 * 300.00123 * 1 2 3 29 29 H 1.09005 * 109.47256 * 60.00019 * 1 2 3 30 30 H 1.09004 * 109.47238 * 269.99984 * 3 2 1 31 31 H 1.08996 * 109.47723 * 30.00004 * 3 2 1 32 32 H 1.09003 * 109.47079 * 150.00130 * 3 2 1 33 33 H 1.08005 * 119.99943 * 0.04961 * 8 7 4 34 34 H 1.08004 * 120.00227 * 180.02562 * 9 8 7 35 35 H 1.07992 * 120.00025 * 179.97438 * 10 9 8 36 36 H 1.08990 * 109.47415 * 30.02092 * 12 11 10 37 37 H 1.09006 * 109.46768 * 150.01991 * 12 11 10 38 38 H 0.97001 * 120.00118 * 0.02562 * 13 12 11 39 39 H 0.97001 * 120.00017 * 0.02562 * 16 14 13 40 40 H 1.09000 * 109.47040 * 299.99968 * 17 16 14 41 41 H 1.08997 * 109.47093 * 59.99675 * 17 16 14 42 42 H 0.96992 * 120.00104 * 179.97438 * 21 20 18 43 43 H 1.08000 * 119.99660 * 0.26988 * 26 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 16 2.2930 -1.4341 0.0006 5 8 1.4114 -2.4062 0.5455 6 8 3.5759 -1.1565 0.5450 7 6 2.5538 -1.8865 -1.6822 8 6 1.6197 -2.6635 -2.3418 9 6 1.8240 -3.0179 -3.6620 10 6 2.9632 -2.5967 -4.3226 11 6 3.8973 -1.8204 -3.6629 12 6 5.1387 -1.3608 -4.3831 13 7 6.2011 -2.3542 -4.2076 14 6 7.4103 -2.1540 -4.7683 15 8 7.6194 -1.1487 -5.4194 16 7 8.3874 -3.0681 -4.6073 17 6 9.7019 -2.8503 -5.2163 18 6 10.6063 -4.0100 -4.8875 19 1 10.2389 -4.8274 -4.2849 20 6 11.9029 -4.0276 -5.3562 21 7 12.3502 -3.0324 -6.0906 22 14 13.0242 -5.4648 -4.9481 23 1 12.4337 -6.7196 -5.4792 24 1 14.3565 -5.2440 -5.5656 25 1 13.1738 -5.5730 -3.4747 26 6 3.6928 -1.4655 -2.3425 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 2.3791 1.5835 -1.0277 31 1 1.6085 2.0284 0.5138 32 1 3.1499 1.1384 0.5138 33 1 0.7297 -2.9926 -1.8259 34 1 1.0941 -3.6246 -4.1775 35 1 3.1230 -2.8740 -5.3540 36 1 4.9211 -1.2452 -5.4448 37 1 5.4639 -0.4048 -3.9726 38 1 6.0341 -3.1564 -3.6884 39 1 8.2204 -3.8703 -4.0881 40 1 9.5924 -2.7696 -6.2978 41 1 10.1353 -1.9298 -4.8254 42 1 13.2624 -3.0446 -6.4200 43 1 4.4249 -0.8629 -1.8256 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426423014.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:55 Heat of formation + Delta-G solvation = -72.604249 kcal Electronic energy + Delta-G solvation = -26649.686983 eV Core-core repulsion = 22629.237139 eV Total energy + Delta-G solvation = -4020.449844 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.99347 -38.94667 -37.67231 -36.61573 -36.19127 -34.96698 -34.01292 -32.38623 -31.69597 -31.38852 -28.58379 -27.49305 -25.79003 -25.14445 -23.64006 -22.66052 -21.90877 -20.21035 -19.34584 -18.44827 -17.93830 -17.73859 -16.68409 -16.50208 -16.11796 -15.84881 -15.71339 -15.08823 -14.87118 -14.65291 -14.57059 -14.49077 -13.82630 -13.65602 -13.40449 -13.08079 -13.00217 -12.97834 -12.86967 -12.82255 -12.64868 -12.40240 -12.03674 -12.00220 -11.94331 -11.73354 -11.54171 -11.11340 -10.95842 -10.85236 -10.28980 -9.86356 -9.60893 -9.57614 -9.37122 -9.21226 -8.82710 -8.67668 -7.76112 -6.13604 -4.20154 -0.06682 0.42103 0.81055 2.46930 2.98488 3.27589 3.31899 3.33185 3.35430 3.59211 3.85540 3.92891 4.29836 4.31132 4.35139 4.41863 4.59133 4.79228 4.84053 4.90113 4.96823 5.08888 5.11065 5.14090 5.22362 5.27011 5.36467 5.41493 5.43701 5.51349 5.62879 5.73273 5.83728 5.99610 6.09783 6.39452 6.76903 7.10745 7.51572 7.55662 7.58395 7.90891 8.05157 8.77406 8.93745 9.32559 9.48753 10.96583 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018476 B = 0.002075 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.109511 B =13492.693643 C =13796.498143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -1.005 6.005 3 C 0.081 3.919 4 S 2.693 3.307 5 O -0.955 6.955 6 O -0.950 6.950 7 C -0.680 4.680 8 C -0.018 4.018 9 C -0.141 4.141 10 C -0.043 4.043 11 C -0.120 4.120 12 C 0.181 3.819 13 N -0.756 5.756 14 C 0.694 3.306 15 O -0.601 6.601 16 N -0.728 5.728 17 C 0.267 3.733 18 C -0.542 4.542 19 H 0.062 0.938 20 C 0.063 3.937 21 N -0.886 5.886 22 Si 0.905 3.095 23 H -0.276 1.276 24 H -0.285 1.285 25 H -0.275 1.275 26 C -0.001 4.001 27 H 0.085 0.915 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.139 0.861 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.393 0.607 39 H 0.387 0.613 40 H 0.025 0.975 41 H 0.025 0.975 42 H 0.266 0.734 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.414 5.190 10.571 31.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.844 5.844 3 C -0.065 4.065 4 S 2.783 3.217 5 O -0.946 6.946 6 O -0.940 6.940 7 C -0.767 4.767 8 C -0.038 4.038 9 C -0.160 4.160 10 C -0.062 4.062 11 C -0.121 4.121 12 C 0.057 3.943 13 N -0.414 5.414 14 C 0.393 3.607 15 O -0.480 6.480 16 N -0.380 5.380 17 C 0.146 3.854 18 C -0.581 4.581 19 H 0.080 0.920 20 C -0.140 4.140 21 N -0.523 5.523 22 Si 0.732 3.268 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 C -0.021 4.021 27 H 0.104 0.896 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.157 0.843 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.226 0.774 39 H 0.219 0.781 40 H 0.043 0.957 41 H 0.043 0.957 42 H 0.076 0.924 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -28.720 5.787 10.560 31.142 hybrid contribution 0.399 -1.411 -0.233 1.484 sum -28.322 4.376 10.327 30.462 Atomic orbital electron populations 1.21602 0.78012 1.03882 1.02543 1.57278 1.15439 1.21771 1.89945 1.21653 0.97451 0.84820 1.02530 1.02012 0.73213 0.72434 0.74007 1.93576 1.66177 1.58419 1.76388 1.93602 1.39846 1.84212 1.76321 1.30963 1.04528 1.14538 1.26688 1.20929 0.96669 0.91793 0.94386 1.21313 0.98403 1.01425 0.94849 1.21522 0.92212 0.92256 1.00188 1.20158 0.97267 1.00099 0.94569 1.19915 0.82777 0.91974 0.99679 1.45199 1.11630 1.25296 1.59285 1.16130 0.80027 0.84165 0.80338 1.90876 1.81650 1.29402 1.46047 1.45729 1.13651 1.22297 1.56352 1.18984 0.75849 0.97077 0.93472 1.21191 0.96935 1.05712 1.34243 0.91996 1.24947 0.97860 0.96473 0.94764 1.69967 1.17183 1.30973 1.34184 0.86462 0.79556 0.82121 0.78670 1.20116 1.21089 1.20074 1.20914 0.93779 0.93989 0.93438 0.89626 0.91445 0.91934 0.92351 0.90330 0.89554 0.84335 0.84746 0.84681 0.90690 0.90699 0.77417 0.78103 0.95728 0.95699 0.92414 0.83925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.38 10.67 59.85 0.64 1.02 16 2 N -1.01 -6.71 3.58 -129.20 -0.46 -7.17 16 3 C 0.08 0.43 10.70 59.85 0.64 1.07 16 4 S 2.69 25.60 5.69 -107.50 -0.61 24.99 16 5 O -0.96 -10.88 15.85 -57.17 -0.91 -11.78 16 6 O -0.95 -11.84 15.88 -57.17 -0.91 -12.75 16 7 C -0.68 -6.25 5.97 -39.58 -0.24 -6.48 16 8 C -0.02 -0.15 9.52 -39.59 -0.38 -0.52 16 9 C -0.14 -1.04 10.05 -39.58 -0.40 -1.44 16 10 C -0.04 -0.36 9.70 -39.58 -0.38 -0.75 16 11 C -0.12 -1.20 5.25 -104.63 -0.55 -1.75 16 12 C 0.18 2.27 5.80 -5.19 -0.03 2.24 16 13 N -0.76 -11.31 5.55 -66.41 -0.37 -11.68 16 14 C 0.69 14.37 8.57 -86.92 -0.74 13.62 16 15 O -0.60 -14.96 16.34 5.29 0.09 -14.88 16 16 N -0.73 -15.81 5.55 -66.42 -0.37 -16.18 16 17 C 0.27 7.23 5.43 -5.19 -0.03 7.20 16 18 C -0.54 -14.93 9.28 -34.44 -0.32 -15.25 16 19 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 21 N -0.89 -26.33 13.29 55.43 0.74 -25.60 16 22 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 C 0.00 -0.01 9.18 -39.58 -0.36 -0.38 16 27 H 0.09 0.39 6.91 -51.93 -0.36 0.03 16 28 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.27 8.07 -51.93 -0.42 -0.15 16 32 H 0.09 0.54 7.02 -51.93 -0.36 0.17 16 33 H 0.14 0.85 7.62 -52.48 -0.40 0.45 16 34 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 35 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 37 H 0.07 0.97 8.09 -51.93 -0.42 0.55 16 38 H 0.39 4.94 8.48 -40.82 -0.35 4.59 16 39 H 0.39 7.22 8.34 -40.82 -0.34 6.88 16 40 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.14 1.38 7.61 -52.49 -0.40 0.98 16 LS Contribution 381.12 15.07 5.74 5.74 Total: -1.00 -37.53 381.12 -10.29 -47.82 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -5.96 Total: 5.14 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -2.25 Total: 0.27 kcal Atomic # 7 Polarization: -60.17 SS G_CDS: -0.46 Total: -60.63 kcal Atomic # 8 Polarization: -37.68 SS G_CDS: -1.73 Total: -39.41 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 25.60 SS G_CDS: -0.61 Total: 24.99 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.53 -10.29 -47.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426423014.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.782 kcal (2) G-P(sol) polarization free energy of solvation -37.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds