Wall clock time and date at job start Sat Apr 11 2020 06:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00418 * 2 1 4 4 C 1.52994 * 109.47649 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47027 * 65.00085 * 4 3 2 6 6 C 1.37103 * 120.00428 * 270.00400 * 5 4 3 7 7 H 1.07994 * 120.00538 * 145.14069 * 6 5 4 8 8 C 1.38950 * 119.99643 * 325.14156 * 6 5 4 9 9 N 1.31415 * 120.00199 * 337.44022 * 8 6 5 10 10 Si 1.86797 * 120.00030 * 157.44078 * 8 6 5 11 11 H 1.48495 * 109.47268 * 59.99964 * 10 8 6 12 12 H 1.48500 * 109.47255 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.46823 * 299.99866 * 10 8 6 14 14 C 1.34777 * 120.00194 * 90.00305 * 5 4 3 15 15 O 1.21296 * 119.99792 * 4.90071 * 14 5 4 16 16 C 1.50698 * 120.00550 * 184.90228 * 14 5 4 17 17 C 1.52999 * 109.47475 * 177.65773 * 16 14 5 18 18 C 1.52995 * 109.47144 * 180.02562 * 17 16 14 19 19 O 1.42908 * 109.47137 * 180.02562 * 18 17 16 20 20 C 1.35914 * 116.99932 * 179.97438 * 19 18 17 21 21 C 1.38723 * 120.04385 * 0.27120 * 20 19 18 22 22 C 1.38153 * 119.95459 * 180.23068 * 21 20 19 23 23 C 1.38364 * 120.04028 * 359.50038 * 22 21 20 24 24 Cl 1.73600 * 119.95306 * 180.27625 * 23 22 21 25 25 C 1.38358 * 120.08948 * 0.24590 * 23 22 21 26 26 C 1.38142 * 120.04180 * 0.02562 * 25 23 22 27 27 H 1.08997 * 109.46803 * 59.99903 * 1 2 3 28 28 H 1.08998 * 109.47129 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46688 * 299.99345 * 1 2 3 30 30 H 1.09003 * 109.46589 * 60.00011 * 3 2 1 31 31 H 1.08998 * 109.47048 * 300.00785 * 3 2 1 32 32 H 1.08999 * 109.47204 * 305.00512 * 4 3 2 33 33 H 1.09001 * 109.47672 * 185.00226 * 4 3 2 34 34 H 0.96992 * 120.00257 * 185.01823 * 9 8 6 35 35 H 1.08998 * 109.46793 * 57.65502 * 16 14 5 36 36 H 1.09003 * 109.47199 * 297.65882 * 16 14 5 37 37 H 1.08997 * 109.46952 * 59.99675 * 17 16 14 38 38 H 1.09003 * 109.46996 * 300.00233 * 17 16 14 39 39 H 1.08997 * 109.47560 * 59.99927 * 18 17 16 40 40 H 1.08999 * 109.47091 * 299.99483 * 18 17 16 41 41 H 1.07997 * 120.02418 * 359.97438 * 21 20 19 42 42 H 1.08001 * 119.97288 * 179.77103 * 22 21 20 43 43 H 1.08003 * 119.97920 * 180.02562 * 25 23 22 44 44 H 1.08003 * 120.02154 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.0969 -0.7986 -1.3371 7 1 3.8633 -1.3054 -2.2618 8 6 4.5202 -1.5281 -0.2329 9 7 5.2126 -0.9403 0.7169 10 14 4.1052 -3.3444 -0.0984 11 1 4.6880 -4.0723 -1.2541 12 1 4.6679 -3.8886 1.1635 13 1 2.6301 -3.5163 -0.0979 14 6 4.2615 1.3337 -2.3218 15 8 4.2405 2.5424 -2.2222 16 6 4.6072 0.6924 -3.6410 17 6 4.8293 1.7798 -4.6941 18 6 5.1796 1.1286 -6.0335 19 8 5.3876 2.1442 -7.0171 20 6 5.7098 1.7318 -8.2714 21 6 5.8177 0.3773 -8.5508 22 6 6.1499 -0.0398 -9.8253 23 6 6.3648 0.8921 -10.8252 24 17 6.7751 0.3653 -12.4276 25 6 6.2524 2.2434 -10.5497 26 6 5.9259 2.6646 -9.2752 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.6887 1.8463 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8515 0.5681 0.8409 33 1 3.9786 2.1764 0.0890 34 1 5.5703 -1.4635 1.4510 35 1 3.7893 0.0440 -3.9550 36 1 5.5169 0.1022 -3.5307 37 1 5.6472 2.4282 -4.3800 38 1 3.9196 2.3700 -4.8044 39 1 4.3615 0.4804 -6.3475 40 1 6.0892 0.5381 -5.9236 41 1 5.6462 -0.3506 -7.7716 42 1 6.2376 -1.0942 -10.0423 43 1 6.4201 2.9693 -11.3316 44 1 5.8380 3.7194 -9.0607 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457183922.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:12 Heat of formation + Delta-G solvation = -101.856982 kcal Electronic energy + Delta-G solvation = -26581.220184 eV Core-core repulsion = 22525.165388 eV Total energy + Delta-G solvation = -4056.054795 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.123 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.32120 -38.76734 -37.90711 -36.99733 -36.39880 -34.77997 -33.30292 -31.57831 -31.40830 -29.94956 -29.28669 -26.80739 -25.76810 -24.66197 -23.47564 -22.61877 -21.86296 -20.80422 -19.06752 -18.43495 -17.00786 -16.52323 -16.34922 -16.28691 -15.95785 -15.41385 -15.30170 -14.81524 -14.61640 -14.36018 -14.32628 -13.98344 -13.81117 -13.64170 -13.50110 -12.84083 -12.55446 -12.48878 -12.01304 -11.86038 -11.66796 -11.59926 -11.44821 -11.18363 -11.12829 -11.07713 -10.95872 -10.80726 -10.76171 -10.55331 -10.38145 -10.27512 -10.04174 -9.38320 -9.15465 -8.97985 -8.44981 -8.31304 -7.49842 -6.33511 -3.97256 0.96813 1.00367 1.94138 3.06007 3.15809 3.24930 3.30286 3.38245 3.86328 4.16350 4.47935 4.50608 4.55050 4.73411 4.87652 5.02666 5.06009 5.08386 5.22487 5.25140 5.40049 5.63666 5.64898 5.67399 5.71100 5.83221 5.85149 5.94359 5.97927 5.98667 6.03241 6.06045 6.19310 6.31760 6.33699 6.43997 6.56874 6.68760 6.76038 7.26656 7.28524 7.50527 7.81478 8.00433 8.37702 9.12268 9.51935 9.93700 10.69553 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015541 B = 0.002032 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.203008 B =13775.998275 C =14580.556947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.362 6.362 3 C 0.054 3.946 4 C 0.108 3.892 5 N -0.428 5.428 6 C -0.327 4.327 7 H 0.087 0.913 8 C 0.052 3.948 9 N -0.864 5.864 10 Si 0.916 3.084 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.270 1.270 14 C 0.466 3.534 15 O -0.612 6.612 16 C -0.114 4.114 17 C -0.099 4.099 18 C 0.058 3.942 19 O -0.308 6.308 20 C 0.145 3.855 21 C -0.199 4.199 22 C -0.068 4.068 23 C -0.080 4.080 24 Cl -0.078 7.078 25 C -0.071 4.071 26 C -0.145 4.145 27 H 0.031 0.969 28 H 0.077 0.923 29 H 0.029 0.971 30 H 0.039 0.961 31 H 0.037 0.963 32 H 0.118 0.882 33 H 0.072 0.928 34 H 0.270 0.730 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.140 0.860 42 H 0.135 0.865 43 H 0.138 0.862 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.926 1.161 -15.866 15.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C -0.023 4.023 4 C -0.016 4.016 5 N -0.145 5.145 6 C -0.455 4.455 7 H 0.104 0.896 8 C -0.154 4.154 9 N -0.501 5.501 10 Si 0.743 3.257 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.196 1.196 14 C 0.256 3.744 15 O -0.499 6.499 16 C -0.154 4.154 17 C -0.137 4.137 18 C -0.017 4.017 19 O -0.221 6.221 20 C 0.098 3.902 21 C -0.218 4.218 22 C -0.087 4.087 23 C -0.107 4.107 24 Cl -0.050 7.050 25 C -0.090 4.090 26 C -0.164 4.164 27 H 0.050 0.950 28 H 0.095 0.905 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.135 0.865 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.158 0.842 42 H 0.153 0.847 43 H 0.156 0.844 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.782 1.667 -15.606 15.715 hybrid contribution -0.458 -1.164 0.079 1.254 sum -1.240 0.503 -15.528 15.585 Atomic orbital electron populations 1.22644 0.83575 1.01696 0.98780 1.88165 1.17215 1.27604 1.94997 1.23021 0.96556 0.84345 0.98405 1.21531 0.89247 0.99294 0.91566 1.43329 1.55812 1.06303 1.09101 1.19218 1.45849 0.80593 0.99846 0.89550 1.25215 0.94301 0.99859 0.95999 1.69803 1.30405 1.36976 1.12903 0.86195 0.79412 0.82639 0.77498 1.20134 1.21201 1.19574 1.20248 0.80666 0.86713 0.86803 1.90524 1.58786 1.14686 1.85893 1.21206 1.03379 0.97752 0.93110 1.21257 1.03720 0.98641 0.90109 1.23066 1.00879 0.90013 0.87755 1.86129 1.83104 1.36649 1.16253 1.19171 0.93246 0.92469 0.85308 1.21330 1.07324 0.95104 0.98083 1.20848 0.96968 0.99544 0.91300 1.20749 1.08991 0.94170 0.86793 1.98355 1.92443 1.90816 1.23360 1.20830 0.97765 0.93872 0.96489 1.20424 1.05203 0.99891 0.90868 0.95035 0.90486 0.95198 0.94325 0.94457 0.86477 0.91002 0.91987 0.90227 0.89271 0.90365 0.90732 0.91807 0.91635 0.84204 0.84749 0.84443 0.84185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.36 -7.64 10.18 -35.23 -0.36 -8.00 16 3 C 0.05 1.12 6.28 37.15 0.23 1.35 16 4 C 0.11 2.54 5.47 -4.05 -0.02 2.52 16 5 N -0.43 -10.49 2.52 -114.82 -0.29 -10.78 16 6 C -0.33 -8.07 8.23 -14.93 -0.12 -8.19 16 7 H 0.09 2.02 6.95 -52.49 -0.37 1.66 16 8 C 0.05 1.29 4.95 -17.47 -0.09 1.21 16 9 N -0.86 -22.55 11.34 55.50 0.63 -21.92 16 10 Si 0.92 19.62 29.61 -169.99 -5.03 14.59 16 11 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 12 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 13 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 14 C 0.47 10.89 7.62 -10.99 -0.08 10.81 16 15 O -0.61 -15.57 15.54 5.54 0.09 -15.48 16 16 C -0.11 -2.10 4.33 -27.88 -0.12 -2.22 16 17 C -0.10 -1.60 4.88 -26.73 -0.13 -1.73 16 18 C 0.06 0.74 4.74 37.16 0.18 0.92 16 19 O -0.31 -4.21 10.14 -19.47 -0.20 -4.41 16 20 C 0.14 1.73 6.69 -39.22 -0.26 1.47 16 21 C -0.20 -2.12 9.04 -39.43 -0.36 -2.48 16 22 C -0.07 -0.66 9.82 -39.57 -0.39 -1.05 16 23 C -0.08 -0.80 6.32 -39.49 -0.25 -1.04 16 24 Cl -0.08 -0.72 28.95 -51.86 -1.50 -2.22 16 25 C -0.07 -0.66 9.82 -39.57 -0.39 -1.05 16 26 C -0.15 -1.52 9.99 -39.44 -0.39 -1.91 16 27 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.12 2.98 5.37 -51.93 -0.28 2.70 16 33 H 0.07 1.71 7.36 -51.93 -0.38 1.33 16 34 H 0.27 6.71 8.32 -40.82 -0.34 6.37 16 35 H 0.08 1.35 7.68 -51.93 -0.40 0.95 16 36 H 0.09 1.60 8.10 -51.93 -0.42 1.18 16 37 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 38 H 0.07 1.27 8.12 -51.93 -0.42 0.84 16 39 H 0.06 0.73 7.65 -51.93 -0.40 0.33 16 40 H 0.07 0.77 7.67 -51.93 -0.40 0.37 16 41 H 0.14 1.32 6.30 -52.49 -0.33 0.99 16 42 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 43 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 44 H 0.14 1.28 8.06 -52.48 -0.42 0.85 16 LS Contribution 385.26 15.07 5.81 5.81 Total: -1.00 -29.42 385.26 -8.27 -37.69 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -6.33 Total: 4.53 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -1.08 Total: 0.19 kcal Atomic # 7 Polarization: -33.04 SS G_CDS: 0.34 Total: -32.69 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.47 Total: -27.89 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.03 Total: 14.59 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.50 Total: -2.22 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.42 -8.27 -37.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457183922.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.163 kcal (2) G-P(sol) polarization free energy of solvation -29.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds