Wall clock time and date at job start Sat Apr 11 2020 06:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00007 * 2 1 4 4 C 1.53001 * 109.46807 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47724 * 64.99580 * 4 3 2 6 6 C 1.36932 * 120.00207 * 270.00232 * 5 4 3 7 7 H 1.07999 * 119.99773 * 350.67331 * 6 5 4 8 8 C 1.38815 * 120.00440 * 170.67373 * 6 5 4 9 9 N 1.31614 * 119.99735 * 334.50368 * 8 6 5 10 10 Si 1.86802 * 119.99945 * 154.49980 * 8 6 5 11 11 H 1.48495 * 109.47066 * 60.00510 * 10 8 6 12 12 H 1.48503 * 109.46708 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.46804 * 300.00030 * 10 8 6 14 14 C 1.46496 * 119.99921 * 89.99631 * 5 4 3 15 15 C 1.50701 * 109.47411 * 271.79878 * 14 5 4 16 16 O 1.21240 * 119.99795 * 0.02562 * 15 14 5 17 17 N 1.34774 * 120.00026 * 179.97438 * 15 14 5 18 18 C 1.34780 * 119.99885 * 180.02562 * 17 15 14 19 19 O 1.21538 * 120.00126 * 359.97438 * 18 17 15 20 20 N 1.34774 * 120.00258 * 180.02562 * 18 17 15 21 21 C 1.46497 * 120.00449 * 179.97438 * 20 18 17 22 22 C 1.50699 * 109.47177 * 179.97438 * 21 20 18 23 23 C 1.33387 * 125.20129 * 90.00626 * 22 21 20 24 24 C 1.38430 * 114.92123 * 180.02562 * 23 22 21 25 25 C 1.33391 * 114.91754 * 0.24726 * 24 23 22 26 26 S 1.75881 * 109.59399 * 359.63423 * 25 24 23 27 27 H 1.08997 * 109.47233 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47666 * 300.00691 * 1 2 3 29 29 H 1.09000 * 109.46980 * 60.00683 * 1 2 3 30 30 H 1.08994 * 109.47400 * 59.99646 * 3 2 1 31 31 H 1.09003 * 109.46834 * 299.99178 * 3 2 1 32 32 H 1.08997 * 109.46813 * 304.99270 * 4 3 2 33 33 H 1.08999 * 109.46971 * 184.99919 * 4 3 2 34 34 H 0.97002 * 120.00271 * 179.97438 * 9 8 6 35 35 H 1.09003 * 109.47415 * 151.80017 * 14 5 4 36 36 H 1.08997 * 109.47159 * 31.79769 * 14 5 4 37 37 H 0.97000 * 120.00337 * 0.02562 * 17 15 14 38 38 H 0.97008 * 119.99708 * 359.97438 * 20 18 17 39 39 H 1.09009 * 109.46769 * 60.00159 * 21 20 18 40 40 H 1.08992 * 109.47473 * 300.00179 * 21 20 18 41 41 H 1.08003 * 122.54139 * 0.05424 * 23 22 21 42 42 H 1.07999 * 122.53933 * 179.97438 * 24 23 22 43 43 H 1.08005 * 125.19899 * 179.75274 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9768 0.5638 -1.2507 6 6 4.0979 -0.7976 -1.3342 7 1 4.0158 -1.4026 -0.4434 8 6 4.3261 -1.4001 -2.5638 9 7 3.9430 -0.8011 -3.6713 10 14 5.1771 -3.0609 -2.6465 11 1 4.3781 -4.0643 -1.8982 12 1 5.3007 -3.4837 -4.0647 13 1 6.5296 -2.9547 -2.0425 14 6 4.2884 1.3995 -2.4129 15 6 3.0350 1.6288 -3.2175 16 8 1.9850 1.1425 -2.8556 17 7 3.0810 2.3751 -4.3387 18 6 1.9599 2.5806 -5.0580 19 8 0.9075 2.0923 -4.6958 20 7 2.0060 3.3265 -6.1796 21 6 0.7875 3.5494 -6.9618 22 6 1.1080 4.4096 -8.1569 23 6 1.4843 3.9546 -9.3530 24 6 1.7264 4.9348 -10.3001 25 6 1.5516 6.1858 -9.8716 26 16 1.0439 6.1670 -8.1877 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 1.6886 1.8464 0.8899 31 1 1.6887 1.8463 -0.8901 32 1 3.8507 0.5685 0.8428 33 1 3.9785 2.1765 0.0902 34 1 4.1027 -1.2218 -4.5306 35 1 5.0313 0.8975 -3.0328 36 1 4.6840 2.3576 -2.0758 37 1 3.9210 2.7645 -4.6281 38 1 2.8460 3.7159 -6.4689 39 1 0.0446 4.0515 -6.3419 40 1 0.3918 2.5914 -7.2988 41 1 1.5916 2.9014 -9.5665 42 1 2.0376 4.7041 -11.3082 43 1 1.6975 7.0743 -10.4680 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459545621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:38 Heat of formation + Delta-G solvation = -26.883952 kcal Electronic energy + Delta-G solvation = -27883.827854 eV Core-core repulsion = 23865.360591 eV Total energy + Delta-G solvation = -4018.467263 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.12850 -38.32806 -37.56745 -36.66646 -34.98419 -34.35040 -33.36182 -31.45630 -30.38414 -28.81340 -27.01676 -26.08240 -25.45063 -23.49727 -23.06826 -21.59690 -20.28232 -19.63391 -19.38284 -18.52563 -17.29434 -16.63284 -16.09503 -15.66823 -15.49770 -15.34491 -15.05736 -14.94486 -14.48911 -13.98718 -13.93279 -13.83153 -13.45525 -13.16217 -13.13005 -12.92808 -12.56999 -12.37304 -12.32825 -11.86613 -11.76885 -11.27474 -11.25042 -11.00105 -10.83707 -10.67910 -10.38002 -10.16229 -10.07055 -9.97567 -9.66124 -9.08630 -9.04167 -8.81968 -8.73321 -8.65176 -8.47940 -8.11740 -6.91271 -5.75221 -2.98332 0.63894 1.34363 1.72966 2.40702 3.17905 3.32477 3.48012 3.53163 3.54627 4.41655 4.45953 4.54215 4.72404 4.78379 4.82517 5.08752 5.28837 5.41905 5.43676 5.46577 5.63752 5.86550 5.92851 5.98897 6.00636 6.12650 6.19988 6.20791 6.28123 6.35480 6.41778 6.47351 6.55115 6.56808 6.90095 7.03575 7.09290 7.55569 7.92035 8.14851 8.23257 8.37878 9.09841 9.21354 9.58645 9.87734 10.28985 11.36455 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014441 B = 0.002838 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.396965 B = 9862.341572 C =10944.055421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.356 6.356 3 C 0.040 3.960 4 C 0.145 3.855 5 N -0.563 5.563 6 C -0.223 4.223 7 H 0.081 0.919 8 C -0.006 4.006 9 N -0.905 5.905 10 Si 0.903 3.097 11 H -0.286 1.286 12 H -0.294 1.294 13 H -0.287 1.287 14 C 0.164 3.836 15 C 0.514 3.486 16 O -0.448 6.448 17 N -0.694 5.694 18 C 0.694 3.306 19 O -0.540 6.540 20 N -0.748 5.748 21 C 0.211 3.789 22 C -0.195 4.195 23 C -0.117 4.117 24 C -0.137 4.137 25 C -0.212 4.212 26 S 0.112 5.888 27 H 0.071 0.929 28 H 0.019 0.981 29 H 0.037 0.963 30 H 0.015 0.985 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.251 0.749 35 H 0.110 0.890 36 H 0.041 0.959 37 H 0.394 0.606 38 H 0.394 0.606 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.143 0.857 42 H 0.141 0.859 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.696 16.352 -9.744 19.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C -0.039 4.039 4 C 0.018 3.982 5 N -0.281 5.281 6 C -0.352 4.352 7 H 0.099 0.901 8 C -0.203 4.203 9 N -0.551 5.551 10 Si 0.734 3.266 11 H -0.212 1.212 12 H -0.221 1.221 13 H -0.214 1.214 14 C 0.032 3.968 15 C 0.299 3.701 16 O -0.312 6.312 17 N -0.360 5.360 18 C 0.394 3.606 19 O -0.412 6.412 20 N -0.408 5.408 21 C 0.085 3.915 22 C -0.313 4.313 23 C -0.149 4.149 24 C -0.168 4.168 25 C -0.348 4.348 26 S 0.375 5.625 27 H 0.090 0.910 28 H 0.038 0.962 29 H 0.055 0.945 30 H 0.033 0.967 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.128 0.872 36 H 0.059 0.941 37 H 0.226 0.774 38 H 0.228 0.772 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.161 0.839 42 H 0.158 0.842 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.578 16.381 -8.140 18.473 hybrid contribution 1.077 -1.327 -2.023 2.648 sum -1.501 15.055 -10.163 18.226 Atomic orbital electron populations 1.22516 0.83590 1.01214 0.98402 1.88024 1.17284 1.27206 1.94874 1.23438 0.97345 0.85212 0.97938 1.21056 0.90253 0.96540 0.90359 1.44175 1.74494 1.03512 1.05917 1.19239 1.40338 0.81988 0.93623 0.90127 1.24662 1.01994 0.98070 0.95524 1.69907 1.47928 1.40073 0.97211 0.86301 0.79995 0.84068 0.76211 1.21224 1.22068 1.21379 1.20877 0.93310 0.93229 0.89358 1.22891 0.93714 0.74850 0.78670 1.90638 1.32022 1.41679 1.66864 1.44919 1.10332 1.53034 1.27754 1.16423 0.85225 0.79153 0.79755 1.91013 1.28988 1.51447 1.69792 1.45419 1.11579 1.57091 1.26700 1.19402 0.87028 0.97680 0.87362 1.24566 1.10398 0.96714 0.99611 1.20281 1.01146 1.01409 0.92083 1.20209 1.03651 0.91730 1.01189 1.25716 1.08838 1.01579 0.98687 1.84424 1.66499 1.02842 1.08709 0.91040 0.96224 0.94461 0.96734 0.92714 0.92281 0.92757 0.93829 0.87182 0.94062 0.77352 0.77230 0.90718 0.89734 0.83882 0.84170 0.81874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.82 11.01 101.05 1.11 1.93 16 2 O -0.36 -8.62 10.18 -35.23 -0.36 -8.98 16 3 C 0.04 0.86 5.69 37.16 0.21 1.07 16 4 C 0.14 3.00 6.14 -4.04 -0.02 2.98 16 5 N -0.56 -13.63 2.09 -174.62 -0.36 -13.99 16 6 C -0.22 -6.08 9.20 -15.06 -0.14 -6.21 16 7 H 0.08 2.24 7.93 -52.49 -0.42 1.83 16 8 C -0.01 -0.17 4.87 -17.43 -0.08 -0.26 16 9 N -0.90 -25.48 9.16 55.49 0.51 -24.97 16 10 Si 0.90 22.09 29.62 -169.99 -5.04 17.05 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 13 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 14 C 0.16 3.56 5.46 -5.20 -0.03 3.53 16 15 C 0.51 11.90 5.80 -10.99 -0.06 11.83 16 16 O -0.45 -12.59 11.87 -18.21 -0.22 -12.81 16 17 N -0.69 -12.83 5.24 -15.78 -0.08 -12.91 16 18 C 0.69 13.39 8.50 -86.92 -0.74 12.65 16 19 O -0.54 -13.42 14.74 -18.47 -0.27 -13.69 16 20 N -0.75 -10.27 5.55 -66.43 -0.37 -10.63 16 21 C 0.21 2.66 6.16 -5.20 -0.03 2.63 16 22 C -0.20 -1.98 5.88 -36.00 -0.21 -2.19 16 23 C -0.12 -1.09 10.05 -41.21 -0.41 -1.50 16 24 C -0.14 -1.09 10.18 -41.20 -0.42 -1.51 16 25 C -0.21 -1.61 11.23 29.04 0.33 -1.28 16 26 S 0.11 0.98 23.33 -107.50 -2.51 -1.52 16 27 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 28 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.05 1.31 5.79 -51.93 -0.30 1.01 16 32 H 0.06 1.20 8.03 -51.93 -0.42 0.79 16 33 H 0.05 0.94 7.91 -51.93 -0.41 0.53 16 34 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 35 H 0.11 2.54 6.25 -51.93 -0.32 2.21 16 36 H 0.04 0.73 7.92 -51.93 -0.41 0.31 16 37 H 0.39 5.40 8.71 -40.82 -0.36 5.04 16 38 H 0.39 4.24 8.48 -40.82 -0.35 3.89 16 39 H 0.07 0.99 8.14 -51.92 -0.42 0.56 16 40 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.14 1.24 8.06 -52.48 -0.42 0.81 16 42 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 43 H 0.16 0.86 8.06 -52.48 -0.42 0.44 16 LS Contribution 375.61 15.07 5.66 5.66 Total: -1.00 -37.35 375.61 -9.47 -46.81 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -5.92 Total: 6.32 kcal Atomic # 6 Polarization: 24.18 SS G_CDS: -0.51 Total: 23.67 kcal Atomic # 7 Polarization: -62.20 SS G_CDS: -0.31 Total: -62.51 kcal Atomic # 8 Polarization: -34.63 SS G_CDS: -0.85 Total: -35.47 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.04 Total: 17.05 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.51 Total: -1.52 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.35 -9.47 -46.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459545621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.930 kcal (2) G-P(sol) polarization free energy of solvation -37.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds