Wall clock time and date at job start Sat Apr 11 2020 06:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00007 * 2 1 4 4 C 1.53001 * 109.46807 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47724 * 64.99580 * 4 3 2 6 6 C 1.36932 * 120.00207 * 270.00232 * 5 4 3 7 7 H 1.07999 * 119.99773 * 350.67331 * 6 5 4 8 8 C 1.38815 * 120.00440 * 170.67373 * 6 5 4 9 9 N 1.31614 * 119.99735 * 334.50368 * 8 6 5 10 10 Si 1.86802 * 119.99945 * 154.49980 * 8 6 5 11 11 H 1.48495 * 109.47066 * 60.00510 * 10 8 6 12 12 H 1.48503 * 109.46708 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.46804 * 300.00030 * 10 8 6 14 14 C 1.46496 * 119.99921 * 89.99631 * 5 4 3 15 15 C 1.50701 * 109.47411 * 271.79878 * 14 5 4 16 16 O 1.21240 * 119.99795 * 0.02562 * 15 14 5 17 17 N 1.34774 * 120.00026 * 179.97438 * 15 14 5 18 18 C 1.34780 * 119.99885 * 180.02562 * 17 15 14 19 19 O 1.21538 * 120.00126 * 359.97438 * 18 17 15 20 20 N 1.34774 * 120.00258 * 180.02562 * 18 17 15 21 21 C 1.46497 * 120.00449 * 179.97438 * 20 18 17 22 22 C 1.50699 * 109.47177 * 179.97438 * 21 20 18 23 23 C 1.33387 * 125.20129 * 90.00626 * 22 21 20 24 24 C 1.38430 * 114.92123 * 180.02562 * 23 22 21 25 25 C 1.33391 * 114.91754 * 0.24726 * 24 23 22 26 26 S 1.75881 * 109.59399 * 359.63423 * 25 24 23 27 27 H 1.08997 * 109.47233 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47666 * 300.00691 * 1 2 3 29 29 H 1.09000 * 109.46980 * 60.00683 * 1 2 3 30 30 H 1.08994 * 109.47400 * 59.99646 * 3 2 1 31 31 H 1.09003 * 109.46834 * 299.99178 * 3 2 1 32 32 H 1.08997 * 109.46813 * 304.99270 * 4 3 2 33 33 H 1.08999 * 109.46971 * 184.99919 * 4 3 2 34 34 H 0.97002 * 120.00271 * 179.97438 * 9 8 6 35 35 H 1.09003 * 109.47415 * 151.80017 * 14 5 4 36 36 H 1.08997 * 109.47159 * 31.79769 * 14 5 4 37 37 H 0.97000 * 120.00337 * 0.02562 * 17 15 14 38 38 H 0.97008 * 119.99708 * 359.97438 * 20 18 17 39 39 H 1.09009 * 109.46769 * 60.00159 * 21 20 18 40 40 H 1.08992 * 109.47473 * 300.00179 * 21 20 18 41 41 H 1.08003 * 122.54139 * 0.05424 * 23 22 21 42 42 H 1.07999 * 122.53933 * 179.97438 * 24 23 22 43 43 H 1.08005 * 125.19899 * 179.75274 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9768 0.5638 -1.2507 6 6 4.0979 -0.7976 -1.3342 7 1 4.0158 -1.4026 -0.4434 8 6 4.3261 -1.4001 -2.5638 9 7 3.9430 -0.8011 -3.6713 10 14 5.1771 -3.0609 -2.6465 11 1 4.3781 -4.0643 -1.8982 12 1 5.3007 -3.4837 -4.0647 13 1 6.5296 -2.9547 -2.0425 14 6 4.2884 1.3995 -2.4129 15 6 3.0350 1.6288 -3.2175 16 8 1.9850 1.1425 -2.8556 17 7 3.0810 2.3751 -4.3387 18 6 1.9599 2.5806 -5.0580 19 8 0.9075 2.0923 -4.6958 20 7 2.0060 3.3265 -6.1796 21 6 0.7875 3.5494 -6.9618 22 6 1.1080 4.4096 -8.1569 23 6 1.4843 3.9546 -9.3530 24 6 1.7264 4.9348 -10.3001 25 6 1.5516 6.1858 -9.8716 26 16 1.0439 6.1670 -8.1877 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 1.6886 1.8464 0.8899 31 1 1.6887 1.8463 -0.8901 32 1 3.8507 0.5685 0.8428 33 1 3.9785 2.1765 0.0902 34 1 4.1027 -1.2218 -4.5306 35 1 5.0313 0.8975 -3.0328 36 1 4.6840 2.3576 -2.0758 37 1 3.9210 2.7645 -4.6281 38 1 2.8460 3.7159 -6.4689 39 1 0.0446 4.0515 -6.3419 40 1 0.3918 2.5914 -7.2988 41 1 1.5916 2.9014 -9.5665 42 1 2.0376 4.7041 -11.3082 43 1 1.6975 7.0743 -10.4680 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459545621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:36 Heat of formation + Delta-G solvation = -53.854227 kcal Electronic energy + Delta-G solvation = -27884.997373 eV Core-core repulsion = 23865.360591 eV Total energy + Delta-G solvation = -4019.636782 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.71955 -39.55844 -38.83732 -38.32697 -36.72908 -35.77489 -35.03071 -33.40430 -31.38253 -30.50021 -28.74535 -27.18342 -27.08229 -25.17594 -24.10177 -23.06983 -21.96210 -21.16169 -20.30082 -19.87538 -18.69284 -18.14566 -17.43408 -17.27360 -17.12332 -16.68431 -16.47427 -16.34641 -16.17255 -15.68388 -15.44250 -15.44065 -14.95520 -14.80037 -14.22340 -14.01654 -13.86446 -13.61986 -13.49921 -13.22326 -13.16947 -12.93837 -12.77254 -12.62142 -12.54251 -12.20258 -11.96248 -11.87712 -11.71170 -11.67626 -11.57963 -10.74258 -10.58157 -10.30194 -10.11384 -10.04285 -9.72732 -9.41763 -8.82229 -7.80703 -5.03507 -0.07208 0.64305 1.06727 1.51645 1.53315 1.58359 1.60820 1.68567 1.96246 2.60107 2.79929 3.17633 3.29165 3.43402 3.59655 3.69284 4.16795 4.25016 4.38790 4.42547 4.49581 4.52353 4.61474 4.66412 4.67850 4.70595 4.73849 4.79168 4.88049 4.93199 5.17816 5.28777 5.31286 5.32745 5.36963 5.52957 5.58287 5.79772 5.97965 6.32752 6.60054 6.86340 7.21155 7.61369 7.83125 7.99301 8.30863 9.27538 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014441 B = 0.002838 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.396965 B = 9862.341572 C =10944.055421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.393 6.393 3 C 0.042 3.958 4 C 0.140 3.860 5 N -0.578 5.578 6 C -0.225 4.225 7 H 0.067 0.933 8 C -0.053 4.053 9 N -0.921 5.921 10 Si 0.959 3.041 11 H -0.297 1.297 12 H -0.301 1.301 13 H -0.273 1.273 14 C 0.164 3.836 15 C 0.515 3.485 16 O -0.502 6.502 17 N -0.681 5.681 18 C 0.692 3.308 19 O -0.599 6.599 20 N -0.722 5.722 21 C 0.215 3.785 22 C -0.217 4.217 23 C -0.112 4.112 24 C -0.147 4.147 25 C -0.198 4.198 26 S 0.110 5.890 27 H 0.079 0.921 28 H 0.055 0.945 29 H 0.011 0.989 30 H 0.049 0.951 31 H 0.027 0.973 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.241 0.759 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.418 0.582 38 H 0.412 0.588 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.146 0.854 42 H 0.163 0.837 43 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.712 18.400 -10.491 21.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.312 6.312 3 C -0.036 4.036 4 C 0.014 3.986 5 N -0.296 5.296 6 C -0.355 4.355 7 H 0.085 0.915 8 C -0.247 4.247 9 N -0.569 5.569 10 Si 0.789 3.211 11 H -0.224 1.224 12 H -0.228 1.228 13 H -0.199 1.199 14 C 0.033 3.967 15 C 0.301 3.699 16 O -0.370 6.370 17 N -0.349 5.349 18 C 0.393 3.607 19 O -0.476 6.476 20 N -0.381 5.381 21 C 0.089 3.911 22 C -0.334 4.334 23 C -0.144 4.144 24 C -0.177 4.177 25 C -0.334 4.334 26 S 0.373 5.627 27 H 0.098 0.902 28 H 0.073 0.927 29 H 0.030 0.970 30 H 0.067 0.933 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.113 0.887 34 H 0.051 0.949 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.255 0.745 38 H 0.249 0.751 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.163 0.837 42 H 0.181 0.819 43 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -1.096 18.510 -8.925 20.579 hybrid contribution 0.605 -1.844 -1.836 2.672 sum -0.491 16.666 -10.761 19.845 Atomic orbital electron populations 1.22581 0.82138 1.01971 0.98803 1.87961 1.19131 1.29010 1.95062 1.23442 0.97783 0.84290 0.98124 1.21306 0.89885 0.98438 0.88925 1.44341 1.74740 1.02881 1.07601 1.19312 1.39493 0.83724 0.92988 0.91519 1.25232 1.03116 1.00858 0.95504 1.70078 1.49015 1.40901 0.96924 0.85459 0.79472 0.80746 0.75404 1.22411 1.22753 1.19891 1.20957 0.92209 0.94877 0.88661 1.23092 0.93316 0.74123 0.79329 1.90629 1.33887 1.44023 1.68457 1.44485 1.11413 1.52243 1.26745 1.16577 0.84377 0.79155 0.80631 1.90979 1.31100 1.53954 1.71518 1.45179 1.13040 1.55141 1.24758 1.19321 0.86169 0.97577 0.88032 1.24249 1.12851 0.97394 0.98929 1.20485 0.99886 1.02073 0.91994 1.20426 1.03881 0.91413 1.01966 1.26096 1.06945 1.02537 0.97801 1.84447 1.66663 1.01423 1.10147 0.90238 0.92651 0.97011 0.93330 0.95443 0.92159 0.88668 0.94920 0.88521 0.89130 0.74520 0.75104 0.91617 0.91163 0.83678 0.81913 0.79161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.72 11.01 113.37 1.25 2.96 16 2 O -0.39 -19.14 10.18 -148.98 -1.52 -20.66 16 3 C 0.04 1.80 5.69 71.98 0.41 2.21 16 4 C 0.14 5.59 6.14 86.38 0.53 6.12 16 5 N -0.58 -27.59 2.09 -706.37 -1.48 -29.06 16 6 C -0.22 -12.33 9.20 84.04 0.77 -11.56 16 7 H 0.07 3.76 7.93 -2.91 -0.02 3.74 16 8 C -0.05 -2.96 4.87 84.86 0.41 -2.54 16 9 N -0.92 -52.73 9.16 21.65 0.20 -52.53 16 10 Si 0.96 46.08 29.62 68.60 2.03 48.11 16 11 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 12 H -0.30 -14.63 7.11 99.48 0.71 -13.93 16 13 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 14 C 0.16 6.95 5.46 85.63 0.47 7.42 16 15 C 0.51 23.96 5.80 87.66 0.51 24.47 16 16 O -0.50 -29.05 11.87 19.85 0.24 -28.81 16 17 N -0.68 -25.02 5.24 -440.52 -2.31 -27.33 16 18 C 0.69 27.13 8.50 179.05 1.52 28.65 16 19 O -0.60 -31.02 14.74 18.92 0.28 -30.74 16 20 N -0.72 -19.64 5.55 -482.36 -2.68 -22.31 16 21 C 0.21 5.50 6.16 85.63 0.53 6.02 16 22 C -0.22 -4.21 5.88 24.59 0.14 -4.06 16 23 C -0.11 -1.90 10.05 21.22 0.21 -1.69 16 24 C -0.15 -1.93 10.18 21.22 0.22 -1.72 16 25 C -0.20 -2.40 11.23 66.72 0.75 -1.65 16 26 S 0.11 1.75 23.33 -56.49 -1.32 0.43 16 27 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 28 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.03 1.33 5.79 -2.39 -0.01 1.31 16 32 H 0.06 2.37 8.03 -2.39 -0.02 2.35 16 33 H 0.10 2.97 7.91 -2.39 -0.02 2.95 16 34 H 0.24 13.87 8.31 -92.71 -0.77 13.09 16 35 H 0.10 4.39 6.25 -2.39 -0.01 4.38 16 36 H 0.09 2.90 7.92 -2.39 -0.02 2.88 16 37 H 0.42 10.85 8.71 -92.71 -0.81 10.04 16 38 H 0.41 8.29 8.48 -92.70 -0.79 7.50 16 39 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 40 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 42 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 43 H 0.19 1.23 8.06 -2.91 -0.02 1.21 16 Total: -1.00 -84.53 375.61 0.63 -83.90 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: -0.54 Total: 24.37 kcal Atomic # 6 Polarization: 46.92 SS G_CDS: 7.72 Total: 54.64 kcal Atomic # 7 Polarization: -124.98 SS G_CDS: -6.26 Total: -131.24 kcal Atomic # 8 Polarization: -79.21 SS G_CDS: -1.00 Total: -80.21 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -1.32 Total: 0.43 kcal Total: -84.53 0.63 -83.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459545621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.047 kcal (2) G-P(sol) polarization free energy of solvation -84.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds