Wall clock time and date at job start Sat Apr 11 2020 06:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35953 * 117.00226 * 2 1 4 4 C 1.38073 * 120.00057 * 359.97438 * 3 2 1 5 5 C 1.39987 * 119.84136 * 180.25444 * 4 3 2 6 6 C 1.46943 * 120.07817 * 179.72136 * 5 4 3 7 7 C 1.35080 * 119.99982 * 180.02562 * 6 5 4 8 8 C 1.46171 * 120.00303 * 180.02562 * 7 6 5 9 9 O 1.21721 * 119.99881 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99858 * 179.97438 * 8 7 6 11 11 C 1.38791 * 119.99905 * 179.97438 * 10 8 7 12 12 N 1.32444 * 119.20649 * 359.73828 * 11 10 8 13 13 C 1.32269 * 120.74503 * 179.71285 * 12 11 10 14 14 C 1.38614 * 119.18806 * 0.54385 * 13 12 11 15 15 C 1.38615 * 118.54504 * 359.72986 * 14 13 12 16 16 N 1.32270 * 119.18385 * 0.02562 * 15 14 13 17 17 C 1.40041 * 119.83691 * 359.44892 * 5 4 3 18 18 C 1.37641 * 120.00068 * 0.55040 * 17 5 4 19 19 C 1.39066 * 120.16094 * 359.72615 * 18 17 5 20 20 O 1.35611 * 119.91902 * 180.02562 * 19 18 17 21 21 C 1.34758 * 116.99803 * 354.38292 * 20 19 18 22 22 H 1.07998 * 120.00310 * 5.06030 * 21 20 19 23 23 C 1.38708 * 119.99759 * 185.06223 * 21 20 19 24 24 N 1.31523 * 120.00217 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 120.00310 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47207 * 89.99477 * 25 23 21 27 27 H 1.48497 * 109.47168 * 209.99836 * 25 23 21 28 28 H 1.48505 * 109.46662 * 329.99434 * 25 23 21 29 29 H 1.09003 * 109.47400 * 300.00432 * 1 2 3 30 30 H 1.09001 * 109.46848 * 59.99941 * 1 2 3 31 31 H 1.08996 * 109.47526 * 179.97438 * 1 2 3 32 32 H 1.08002 * 120.08039 * 359.97438 * 4 3 2 33 33 H 1.07998 * 120.00328 * 0.02562 * 6 5 4 34 34 H 1.08008 * 119.99689 * 359.97438 * 7 6 5 35 35 H 0.96996 * 120.00615 * 0.02562 * 10 8 7 36 36 H 1.08003 * 120.40364 * 180.26661 * 13 12 11 37 37 H 1.08000 * 120.72687 * 179.74807 * 14 13 12 38 38 H 1.07994 * 120.40567 * 180.02562 * 15 14 13 39 39 H 1.08000 * 120.00108 * 180.30184 * 17 5 4 40 40 H 1.07998 * 119.91575 * 179.69899 * 18 17 5 41 41 H 0.96992 * 120.00337 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2943 2.3693 -0.0005 5 6 1.9333 3.6148 -0.0059 6 6 1.1381 4.8505 -0.0127 7 6 1.7564 6.0515 -0.0184 8 6 0.9655 7.2807 -0.0246 9 8 -0.2503 7.2222 -0.0251 10 7 1.5825 8.4790 -0.0298 11 6 0.8315 9.6462 -0.0362 12 7 -0.4904 9.5641 -0.0424 13 6 -1.2357 10.6568 -0.0429 14 6 -0.6169 11.8972 -0.0483 15 6 0.7684 11.9463 -0.0473 16 7 1.4539 10.8151 -0.0417 17 6 3.3322 3.6803 0.0009 18 6 4.0753 2.5217 0.0015 19 6 3.4405 1.2844 0.0010 20 8 4.1775 0.1460 0.0021 21 6 5.5132 0.2819 -0.1139 22 1 5.9574 1.2663 -0.1200 23 6 6.3176 -0.8426 -0.2256 24 7 7.6211 -0.7100 -0.3393 25 14 5.5493 -2.5453 -0.2158 26 1 5.2202 -2.9478 -1.6068 27 1 6.5083 -3.5177 0.3672 28 1 4.3087 -2.5238 0.6000 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 0.2156 2.3144 -0.0014 33 1 0.0594 4.7986 -0.0131 34 1 2.8352 6.1035 -0.0176 35 1 2.5513 8.5257 -0.0298 36 1 -2.3132 10.5835 -0.0436 37 1 -1.2013 12.8054 -0.0529 38 1 1.2816 12.8965 -0.0510 39 1 3.8279 4.6398 0.0017 40 1 5.1540 2.5738 0.0019 41 1 8.1837 -1.4964 -0.4170 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490981909.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:51 Heat of formation + Delta-G solvation = 23.048601 kcal Electronic energy + Delta-G solvation = -27118.215824 eV Core-core repulsion = 22966.469847 eV Total energy + Delta-G solvation = -4151.745977 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.47296 -39.94492 -39.44218 -37.90279 -36.78098 -35.17550 -33.95835 -33.15958 -32.48055 -31.19444 -29.88665 -28.92329 -26.82406 -25.74795 -25.05207 -24.59345 -23.03284 -21.91545 -21.10854 -19.66946 -18.54224 -18.23195 -17.96693 -17.61909 -16.54462 -16.35081 -16.04588 -15.84768 -15.55968 -15.39332 -14.87934 -14.69176 -14.37177 -14.22445 -13.99949 -13.87735 -13.84486 -13.71854 -13.30955 -12.58342 -12.37243 -12.01851 -11.99293 -11.65344 -11.44364 -11.22327 -11.14525 -11.11919 -11.00380 -10.91478 -10.77840 -10.33045 -10.04205 -9.64338 -9.52756 -9.22379 -8.98735 -8.89845 -8.13083 -7.10680 -6.62172 -4.21547 0.53903 0.85660 0.96839 1.96955 2.36963 2.41294 3.14313 3.18798 3.28071 3.36590 3.73252 3.75237 3.85008 4.12144 4.25206 4.33148 4.36733 4.52715 4.77208 4.86358 4.90654 4.92020 5.08364 5.26619 5.39409 5.40130 5.42054 5.45616 5.59780 5.68336 5.75956 5.83124 6.01850 6.17766 6.26625 6.32945 6.42107 6.67614 6.79494 6.84976 6.95050 7.10167 7.27896 7.45958 7.74794 7.91863 7.94764 8.12667 8.71086 9.32591 10.43287 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021712 B = 0.001943 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.289723 B =14409.436922 C =15679.193167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.309 6.309 3 C 0.051 3.949 4 C -0.134 4.134 5 C -0.160 4.160 6 C 0.043 3.957 7 C -0.275 4.275 8 C 0.551 3.449 9 O -0.484 6.484 10 N -0.640 5.640 11 C 0.541 3.459 12 N -0.504 5.504 13 C 0.176 3.824 14 C -0.271 4.271 15 C 0.178 3.822 16 N -0.554 5.554 17 C -0.060 4.060 18 C -0.211 4.211 19 C 0.156 3.844 20 O -0.187 6.187 21 C -0.388 4.388 22 H 0.112 0.888 23 C 0.067 3.933 24 N -0.863 5.863 25 Si 0.905 3.095 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.254 1.254 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.092 0.908 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.131 0.869 35 H 0.424 0.576 36 H 0.170 0.830 37 H 0.147 0.853 38 H 0.171 0.829 39 H 0.120 0.880 40 H 0.144 0.856 41 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.017 18.845 0.563 23.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.223 6.223 3 C 0.006 3.994 4 C -0.153 4.153 5 C -0.162 4.162 6 C 0.023 3.977 7 C -0.297 4.297 8 C 0.342 3.658 9 O -0.356 6.356 10 N -0.289 5.289 11 C 0.186 3.814 12 N -0.224 5.224 13 C 0.008 3.992 14 C -0.295 4.295 15 C 0.011 3.989 16 N -0.274 5.274 17 C -0.078 4.078 18 C -0.230 4.230 19 C 0.101 3.899 20 O -0.089 6.089 21 C -0.462 4.462 22 H 0.129 0.871 23 C -0.139 4.139 24 N -0.498 5.498 25 Si 0.730 3.270 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.177 1.177 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.111 0.889 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.148 0.852 35 H 0.262 0.738 36 H 0.187 0.813 37 H 0.165 0.835 38 H 0.188 0.812 39 H 0.138 0.862 40 H 0.162 0.838 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.016 17.208 0.557 22.200 hybrid contribution -0.186 0.495 -0.035 0.530 sum -14.202 17.703 0.522 22.701 Atomic orbital electron populations 1.22939 0.79844 1.03176 1.00687 1.86176 1.19903 1.26339 1.89872 1.18029 0.89245 0.84665 1.07435 1.20894 0.98745 0.90815 1.04882 1.18198 0.92832 0.91365 1.13779 1.22264 0.99305 0.90781 0.85319 1.22330 1.00038 0.90787 1.16498 1.18611 0.88176 0.82866 0.76099 1.90900 1.13391 1.86280 1.45036 1.43267 1.10876 1.02785 1.71932 1.19549 0.86018 0.85924 0.89951 1.68574 1.04615 1.32548 1.16615 1.23256 1.00806 0.86957 0.88143 1.22752 0.97157 1.00670 1.08963 1.22964 0.91337 0.95746 0.88840 1.67835 1.41671 0.98006 1.19935 1.21004 0.92394 0.97660 0.96753 1.20977 1.01289 0.90500 1.10254 1.18638 0.87715 0.87032 0.96498 1.83584 1.20482 1.27595 1.77254 1.20921 0.77110 0.97241 1.50947 0.87105 1.24535 0.94546 0.99807 0.95000 1.69619 1.03171 1.32142 1.44915 0.86158 0.79909 0.81294 0.79642 1.19598 1.20576 1.17737 0.93236 0.93224 0.88924 0.85589 0.85633 0.85159 0.73797 0.81312 0.83527 0.81191 0.86211 0.83811 0.90587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.81 101.05 0.99 1.37 16 2 O -0.31 -5.92 10.28 -34.21 -0.35 -6.27 16 3 C 0.05 1.01 6.70 -39.13 -0.26 0.74 16 4 C -0.13 -2.21 8.77 -38.99 -0.34 -2.55 16 5 C -0.16 -2.56 5.87 -105.04 -0.62 -3.18 16 6 C 0.04 0.60 9.45 -37.18 -0.35 0.25 16 7 C -0.28 -3.52 9.40 -37.52 -0.35 -3.87 16 8 C 0.55 7.72 7.69 -13.08 -0.10 7.61 16 9 O -0.48 -8.29 14.42 5.17 0.07 -8.22 16 10 N -0.64 -7.67 5.39 -14.42 -0.08 -7.75 16 11 C 0.54 6.97 8.38 -322.39 -2.70 4.27 16 12 N -0.50 -6.78 7.87 -13.86 -0.11 -6.89 16 13 C 0.18 1.62 11.30 -17.22 -0.19 1.42 16 14 C -0.27 -1.81 10.16 -39.30 -0.40 -2.21 16 15 C 0.18 1.36 11.30 -17.22 -0.19 1.16 16 16 N -0.55 -6.06 10.46 -13.86 -0.14 -6.20 16 17 C -0.06 -0.99 9.40 -39.12 -0.37 -1.36 16 18 C -0.21 -4.19 9.14 -39.49 -0.36 -4.56 16 19 C 0.16 3.48 6.67 -38.76 -0.26 3.22 16 20 O -0.19 -4.78 8.35 -13.93 -0.12 -4.90 16 21 C -0.39 -10.36 9.94 30.91 0.31 -10.05 16 22 H 0.11 2.96 5.42 -52.49 -0.28 2.68 16 23 C 0.07 1.80 5.49 -17.51 -0.10 1.70 16 24 N -0.86 -23.66 13.96 55.48 0.77 -22.89 16 25 Si 0.91 21.02 28.62 -169.99 -4.86 16.15 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 28 H -0.25 -6.03 7.11 56.52 0.40 -5.62 16 29 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 30 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.13 1.71 6.28 -52.49 -0.33 1.38 16 33 H 0.13 1.71 7.52 -52.49 -0.39 1.31 16 34 H 0.13 1.40 6.06 -52.48 -0.32 1.08 16 35 H 0.42 3.84 8.79 -40.82 -0.36 3.48 16 36 H 0.17 1.03 8.06 -52.48 -0.42 0.61 16 37 H 0.15 0.47 8.06 -52.49 -0.42 0.05 16 38 H 0.17 0.66 8.06 -52.49 -0.42 0.23 16 39 H 0.12 1.62 6.15 -52.49 -0.32 1.30 16 40 H 0.14 2.93 5.61 -52.49 -0.29 2.64 16 41 H 0.28 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 361.93 15.07 5.45 5.45 Total: -1.00 -33.68 361.93 -8.59 -42.27 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -3.92 Total: 5.27 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -5.30 Total: -6.02 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: 0.44 Total: -43.73 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.39 Total: -19.39 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.86 Total: 16.15 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.68 -8.59 -42.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490981909.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.316 kcal (2) G-P(sol) polarization free energy of solvation -33.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds