Wall clock time and date at job start Sat Apr 11 2020 06:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35954 * 116.99985 * 2 1 4 4 C 1.38072 * 120.00134 * 359.97438 * 3 2 1 5 5 C 1.39985 * 119.84299 * 180.02562 * 4 3 2 6 6 C 1.46941 * 120.08256 * 180.02562 * 5 4 3 7 7 C 1.35076 * 120.00169 * 226.49467 * 6 5 4 8 8 C 1.46184 * 119.99676 * 10.74963 * 7 6 5 9 9 O 1.21717 * 120.00047 * 7.00392 * 8 7 6 10 10 N 1.34777 * 119.99835 * 187.00125 * 8 7 6 11 11 C 1.38781 * 119.99871 * 180.02562 * 10 8 7 12 12 N 1.32439 * 119.20934 * 359.72537 * 11 10 8 13 13 C 1.32265 * 120.74794 * 179.75763 * 12 11 10 14 14 C 1.38623 * 119.18825 * 0.51158 * 13 12 11 15 15 C 1.38610 * 118.53960 * 359.75092 * 14 13 12 16 16 N 1.32269 * 119.19171 * 359.97438 * 15 14 13 17 17 C 1.40043 * 119.83505 * 359.97438 * 5 4 3 18 18 C 1.37643 * 120.00432 * 359.97438 * 17 5 4 19 19 C 1.39059 * 120.15819 * 359.97438 * 18 17 5 20 20 O 1.35616 * 119.92056 * 180.02562 * 19 18 17 21 21 C 1.34755 * 116.99501 * 354.19315 * 20 19 18 22 22 H 1.08002 * 120.00926 * 5.06928 * 21 20 19 23 23 C 1.38716 * 119.99891 * 185.06585 * 21 20 19 24 24 N 1.31511 * 119.99863 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00189 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46932 * 90.00160 * 25 23 21 27 27 H 1.48497 * 109.47202 * 210.00346 * 25 23 21 28 28 H 1.48499 * 109.47107 * 330.00294 * 25 23 21 29 29 H 1.09003 * 109.46682 * 299.99266 * 1 2 3 30 30 H 1.08997 * 109.47097 * 59.99765 * 1 2 3 31 31 H 1.09001 * 109.46994 * 180.02562 * 1 2 3 32 32 H 1.08002 * 120.07810 * 0.04132 * 4 3 2 33 33 H 1.07993 * 119.99914 * 46.49948 * 6 5 4 34 34 H 1.07994 * 120.00043 * 190.74823 * 7 6 5 35 35 H 0.97001 * 119.99649 * 0.02562 * 10 8 7 36 36 H 1.07997 * 120.40992 * 180.25897 * 13 12 11 37 37 H 1.08002 * 120.72805 * 179.76822 * 14 13 12 38 38 H 1.08002 * 120.40390 * 180.02562 * 15 14 13 39 39 H 1.08004 * 119.99931 * 180.28065 * 17 5 4 40 40 H 1.08002 * 119.91805 * 180.02562 * 18 17 5 41 41 H 0.97003 * 120.00471 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2943 2.3693 -0.0005 5 6 1.9333 3.6149 -0.0011 6 6 1.1381 4.8506 -0.0011 7 6 1.4496 5.8541 -0.8499 8 6 2.4167 5.6301 -1.9229 9 8 2.8452 4.5102 -2.1320 10 7 2.8339 6.6636 -2.6807 11 6 3.7517 6.4509 -3.6997 12 7 4.2114 5.2269 -3.9103 13 6 5.0832 4.9888 -4.8761 14 6 5.5226 6.0408 -5.6647 15 6 5.0248 7.3098 -5.4132 16 7 4.1506 7.4777 -4.4349 17 6 3.3322 3.6803 -0.0005 18 6 4.0754 2.5217 0.0011 19 6 3.4406 1.2845 0.0027 20 8 4.1776 0.1461 0.0048 21 6 5.5128 0.2816 -0.1163 22 1 5.9571 1.2660 -0.1269 23 6 6.3169 -0.8433 -0.2273 24 7 5.7760 -2.0419 -0.2149 25 14 8.1678 -0.6555 -0.3958 26 1 8.7895 -0.6493 0.9527 27 1 8.7105 -1.7896 -1.1860 28 1 8.4747 0.6219 -1.0882 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 0.2157 2.3143 -0.0003 33 1 0.3048 4.9564 0.6776 34 1 0.9841 6.8218 -0.7358 35 1 2.4926 7.5562 -2.5138 36 1 5.4513 3.9878 -5.0457 37 1 6.2368 5.8753 -6.4577 38 1 5.3462 8.1510 -6.0094 39 1 3.8279 4.6398 0.0036 40 1 5.1541 2.5738 0.0019 41 1 6.3382 -2.8286 -0.2928 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490981910.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:55 Heat of formation + Delta-G solvation = 12.992248 kcal Electronic energy + Delta-G solvation = -28828.758284 eV Core-core repulsion = 24676.576231 eV Total energy + Delta-G solvation = -4152.182053 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.25104 -41.29336 -40.43975 -39.22913 -37.85898 -35.98379 -34.71583 -34.51719 -33.89824 -31.95368 -31.11473 -30.01295 -27.87229 -27.37023 -26.02434 -25.54103 -23.97748 -23.20391 -22.53018 -20.76446 -19.87385 -19.58290 -19.12049 -18.41529 -17.69321 -17.38972 -16.82244 -16.73350 -16.66465 -16.59488 -16.31206 -15.64990 -15.59439 -15.38031 -15.20573 -15.03718 -14.94340 -14.64047 -14.33277 -14.03782 -13.90945 -13.50242 -13.07078 -12.83973 -12.73115 -12.56674 -12.22159 -12.14962 -12.00375 -11.91301 -11.87157 -11.79952 -11.35617 -10.90992 -10.75173 -10.32391 -9.95079 -9.71105 -9.36561 -8.46631 -8.37625 -6.10052 -0.26660 0.13516 0.21450 0.64985 1.06679 1.30801 1.42382 1.49617 1.65606 2.16789 2.32147 2.61899 2.84518 2.96662 3.15537 3.19916 3.46778 3.53067 3.79618 3.89014 4.04802 4.11609 4.22879 4.26589 4.35002 4.40277 4.44724 4.56743 4.60868 4.71443 4.75360 4.85070 4.99111 5.07807 5.10625 5.13212 5.32534 5.49029 5.53667 5.57394 5.77345 5.96704 6.05920 6.10709 6.20558 6.69178 6.97456 7.12395 7.37690 7.81483 8.77323 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.008485 B = 0.004102 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3299.303062 B = 6824.946681 C = 9342.119637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.348 6.348 3 C 0.030 3.970 4 C -0.133 4.133 5 C -0.123 4.123 6 C 0.013 3.987 7 C -0.220 4.220 8 C 0.517 3.483 9 O -0.489 6.489 10 N -0.630 5.630 11 C 0.514 3.486 12 N -0.548 5.548 13 C 0.149 3.851 14 C -0.248 4.248 15 C 0.173 3.827 16 N -0.559 5.559 17 C -0.026 4.026 18 C -0.219 4.219 19 C 0.097 3.903 20 O -0.219 6.219 21 C -0.414 4.414 22 H 0.095 0.905 23 C -0.022 4.022 24 N -0.917 5.917 25 Si 1.019 2.981 26 H -0.259 1.259 27 H -0.266 1.266 28 H -0.257 1.257 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.107 0.893 32 H 0.161 0.839 33 H 0.181 0.819 34 H 0.186 0.814 35 H 0.435 0.565 36 H 0.171 0.829 37 H 0.185 0.815 38 H 0.216 0.784 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.901 23.010 -6.822 25.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.263 6.263 3 C -0.015 4.015 4 C -0.152 4.152 5 C -0.124 4.124 6 C -0.006 4.006 7 C -0.241 4.241 8 C 0.307 3.693 9 O -0.359 6.359 10 N -0.282 5.282 11 C 0.158 3.842 12 N -0.269 5.269 13 C -0.017 4.017 14 C -0.271 4.271 15 C 0.007 3.993 16 N -0.280 5.280 17 C -0.044 4.044 18 C -0.239 4.239 19 C 0.046 3.954 20 O -0.126 6.126 21 C -0.490 4.490 22 H 0.112 0.888 23 C -0.220 4.220 24 N -0.555 5.555 25 Si 0.837 3.163 26 H -0.184 1.184 27 H -0.191 1.191 28 H -0.181 1.181 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.125 0.875 32 H 0.179 0.821 33 H 0.198 0.802 34 H 0.203 0.797 35 H 0.276 0.724 36 H 0.188 0.812 37 H 0.202 0.798 38 H 0.232 0.768 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.267 21.679 -6.122 23.996 hybrid contribution 1.365 -0.225 -0.803 1.599 sum -6.903 21.454 -6.924 23.577 Atomic orbital electron populations 1.23245 0.77188 1.04792 1.02015 1.86168 1.22949 1.27042 1.90180 1.18298 0.88822 0.85942 1.08404 1.21132 0.99909 0.89694 1.04471 1.18678 0.92481 0.93525 1.07700 1.22648 0.94766 0.88618 0.94521 1.22980 1.02043 1.02639 0.96404 1.19528 0.82355 0.83926 0.83504 1.91147 1.54028 1.23260 1.67492 1.43238 1.40991 1.13988 1.30012 1.19791 0.89741 0.85629 0.89063 1.68513 1.14563 1.22317 1.21470 1.23600 0.88885 1.01565 0.87634 1.23120 1.05328 0.94294 1.04376 1.23770 0.87290 0.98270 0.89981 1.67911 1.17557 1.32985 1.09581 1.20621 0.93152 0.95671 0.94958 1.20753 0.99890 0.91611 1.11604 1.19425 0.89833 0.87593 0.98569 1.83951 1.19877 1.27714 1.81052 1.21815 0.79301 0.95365 1.52499 0.88800 1.26609 1.05996 0.93463 0.95896 1.70200 1.38295 0.98616 1.48394 0.84608 0.73433 0.78876 0.79339 1.18393 1.19093 1.18135 0.91085 0.92112 0.87464 0.82146 0.80159 0.79722 0.72445 0.81174 0.79771 0.76798 0.87034 0.86917 0.91815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.67 9.81 113.37 1.11 1.79 16 2 O -0.35 -16.71 10.28 -79.06 -0.81 -17.52 16 3 C 0.03 1.46 6.70 22.57 0.15 1.61 16 4 C -0.13 -4.93 8.77 22.65 0.20 -4.73 16 5 C -0.12 -4.22 4.42 -20.14 -0.09 -4.31 16 6 C 0.01 0.28 9.78 23.82 0.23 0.52 16 7 C -0.22 -4.08 9.92 23.61 0.23 -3.85 16 8 C 0.52 14.57 6.83 86.31 0.59 15.16 16 9 O -0.49 -19.43 10.53 -4.40 -0.05 -19.48 16 10 N -0.63 -14.94 5.39 -317.74 -1.71 -16.65 16 11 C 0.51 14.63 8.38 261.35 2.19 16.82 16 12 N -0.55 -18.62 7.86 -197.76 -1.56 -20.17 16 13 C 0.15 3.92 11.30 84.72 0.96 4.88 16 14 C -0.25 -4.19 10.16 22.45 0.23 -3.96 16 15 C 0.17 2.79 11.30 84.72 0.96 3.75 16 16 N -0.56 -12.69 10.46 -197.76 -2.07 -14.76 16 17 C -0.03 -1.05 6.67 22.57 0.15 -0.89 16 18 C -0.22 -11.09 9.14 22.33 0.20 -10.89 16 19 C 0.10 5.47 6.67 22.80 0.15 5.63 16 20 O -0.22 -14.65 9.52 -6.53 -0.06 -14.72 16 21 C -0.41 -26.36 9.48 67.93 0.64 -25.71 16 22 H 0.09 5.61 5.19 -2.91 -0.02 5.60 16 23 C -0.02 -1.35 5.49 84.86 0.47 -0.88 16 24 N -0.92 -59.83 13.67 21.62 0.30 -59.53 16 25 Si 1.02 45.86 29.55 68.60 2.03 47.89 16 26 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 27 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 28 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 29 H 0.07 1.78 7.66 -2.39 -0.02 1.76 16 30 H 0.06 1.64 7.66 -2.39 -0.02 1.63 16 31 H 0.11 2.84 8.14 -2.39 -0.02 2.83 16 32 H 0.16 4.43 6.28 -2.91 -0.02 4.42 16 33 H 0.18 2.11 8.06 -2.91 -0.02 2.08 16 34 H 0.19 1.42 8.06 -2.91 -0.02 1.39 16 35 H 0.43 6.55 8.79 -92.71 -0.81 5.74 16 36 H 0.17 4.13 8.06 -2.91 -0.02 4.11 16 37 H 0.18 1.60 8.06 -2.91 -0.02 1.58 16 38 H 0.22 1.33 8.06 -2.91 -0.02 1.31 16 39 H 0.11 4.18 7.29 -2.91 -0.02 4.16 16 40 H 0.11 5.90 5.62 -2.91 -0.02 5.88 16 41 H 0.27 16.17 8.31 -92.71 -0.77 15.40 16 Total: -1.00 -98.01 358.65 4.74 -93.28 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: 0.29 Total: 26.75 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: 8.38 Total: -5.08 kcal Atomic # 7 Polarization: -106.08 SS G_CDS: -5.04 Total: -111.12 kcal Atomic # 8 Polarization: -50.79 SS G_CDS: -0.92 Total: -51.71 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -98.01 4.74 -93.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490981910.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.268 kcal (2) G-P(sol) polarization free energy of solvation -98.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds