Wall clock time and date at job start Sat Apr 11 2020 06:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46497 * 109.46931 * 69.68797 * 3 2 1 5 5 C 1.36912 * 120.00334 * 268.40202 * 4 3 2 6 6 H 1.08001 * 119.99523 * 192.30716 * 5 4 3 7 7 C 1.39006 * 119.99803 * 12.30214 * 5 4 3 8 8 N 1.31383 * 120.00541 * 27.38219 * 7 5 4 9 9 Si 1.86800 * 119.99843 * 207.38157 * 7 5 4 10 10 H 1.48503 * 109.47015 * 90.00269 * 9 7 5 11 11 H 1.48499 * 109.47452 * 210.00048 * 9 7 5 12 12 H 1.48505 * 109.47281 * 330.00158 * 9 7 5 13 13 C 1.34785 * 119.99551 * 88.40059 * 4 3 2 14 14 O 1.21635 * 119.99408 * 173.39682 * 13 4 3 15 15 C 1.47342 * 120.00244 * 353.67159 * 13 4 3 16 16 N 1.32081 * 126.45256 * 355.12296 * 15 13 4 17 17 N 1.28461 * 110.20454 * 179.97438 * 16 15 13 18 18 C 1.40139 * 124.93095 * 179.97438 * 17 16 15 19 19 C 1.38877 * 120.01538 * 179.75518 * 18 17 16 20 20 C 1.38053 * 119.98498 * 179.77145 * 19 18 17 21 21 C 1.38756 * 120.01229 * 0.50523 * 20 19 18 22 22 O 1.35925 * 119.98991 * 179.76747 * 21 20 19 23 23 C 1.42905 * 116.99460 * 359.97438 * 22 21 20 24 24 C 1.38766 * 120.02872 * 359.74625 * 21 20 19 25 25 C 1.38041 * 120.01391 * 0.02562 * 24 21 20 26 26 C 1.36113 * 110.14262 * 0.02562 * 17 16 15 27 27 C 1.35752 * 107.08084 * 359.72380 * 26 17 16 28 28 O 1.36082 * 127.26305 * 180.29872 * 27 26 17 29 29 H 4.40642 * 5.51318 * 180.02562 * 4 1 2 30 30 H 1.09003 * 109.47040 * 309.69225 * 3 2 1 31 31 H 1.08994 * 109.46505 * 189.68951 * 3 2 1 32 32 H 0.97002 * 120.00705 * 179.97438 * 8 7 5 33 33 H 1.07997 * 120.01006 * 0.02562 * 19 18 17 34 34 H 1.07994 * 119.99122 * 180.22818 * 20 19 18 35 35 H 1.09002 * 109.47021 * 179.97438 * 23 22 21 36 36 H 1.08997 * 109.47193 * 300.00466 * 23 22 21 37 37 H 1.09002 * 109.46912 * 60.00068 * 23 22 21 38 38 H 1.08004 * 119.99499 * 179.97438 * 24 21 20 39 39 H 1.07999 * 120.00502 * 180.02562 * 25 24 21 40 40 H 1.07998 * 126.46075 * 179.97438 * 26 17 16 41 41 H 0.96704 * 113.99601 * 270.14170 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1346 -0.4786 -1.2953 5 6 3.3945 -1.8102 -1.4789 6 1 3.9366 -2.1390 -2.3533 7 6 2.9608 -2.7389 -0.5399 8 7 1.9013 -2.4851 0.1943 9 14 3.8845 -4.3478 -0.3220 10 1 4.9438 -4.1753 0.7044 11 1 2.9391 -5.4061 0.1156 12 1 4.5050 -4.7412 -1.6125 13 6 3.3280 0.3915 -2.3064 14 8 3.8457 0.0160 -3.3410 15 6 2.9181 1.7987 -2.1560 16 7 2.2726 2.3227 -1.1296 17 7 2.0744 3.5770 -1.3237 18 6 1.4171 4.4332 -0.4299 19 6 1.2634 5.7777 -0.7417 20 6 0.6116 6.6196 0.1370 21 6 0.1194 6.1249 1.3363 22 8 -0.5181 6.9552 2.2033 23 6 -0.6450 8.3247 1.8153 24 6 0.2773 4.7826 1.6508 25 6 0.9246 3.9387 0.7708 26 6 2.5945 3.9536 -2.5238 27 6 3.1474 2.8473 -3.0835 28 8 3.7853 2.7617 -4.2825 29 1 -1.0499 0.0002 -0.0001 30 1 3.0097 -0.6555 0.7908 31 1 3.0088 1.0138 0.1730 32 1 1.5984 -3.1333 0.8493 33 1 1.6500 6.1638 -1.6733 34 1 0.4887 7.6644 -0.1070 35 1 -1.1721 8.8757 2.5943 36 1 0.3461 8.7552 1.6725 37 1 -1.2063 8.3877 0.8831 38 1 -0.1057 4.3981 2.5846 39 1 1.0471 2.8940 1.0155 40 1 2.5749 4.9463 -2.9487 41 1 3.2010 2.5552 -5.0250 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491021536.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:00 Heat of formation + Delta-G solvation = 93.752929 kcal Electronic energy + Delta-G solvation = -29124.293559 eV Core-core repulsion = 24975.613553 eV Total energy + Delta-G solvation = -4148.680007 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.52164 -40.30853 -38.41732 -37.69880 -36.73607 -35.02163 -32.85941 -31.93868 -31.56436 -31.11141 -29.76019 -28.83415 -27.47974 -26.33260 -25.14719 -23.42725 -23.19264 -21.41187 -20.84167 -19.41608 -18.58051 -18.03328 -17.77959 -17.02487 -16.58868 -16.20696 -16.15163 -16.06800 -15.66465 -14.98820 -14.64005 -14.26911 -14.13611 -14.01226 -13.84372 -13.63490 -13.54506 -13.11195 -12.87944 -12.67888 -12.39960 -12.24518 -12.18361 -11.69123 -11.44925 -11.26689 -11.07634 -10.84708 -10.46123 -10.30783 -9.86666 -9.50370 -9.34498 -9.23316 -9.14070 -8.84498 -8.66387 -8.45904 -7.91024 -7.75173 -6.40300 -3.79914 0.74966 1.01738 2.25944 2.35723 2.55496 2.96396 3.19740 3.26502 3.31399 3.54116 3.88501 4.17385 4.23457 4.34361 4.38714 4.44320 4.57583 4.68437 4.78584 4.84694 4.95067 4.99753 5.03256 5.10636 5.12473 5.35842 5.44530 5.63503 5.69936 5.74313 5.78903 5.94242 6.00978 6.15765 6.36026 6.44812 6.68038 6.80570 6.99564 7.18454 7.19208 7.52408 8.01122 8.03535 8.23960 8.44661 9.04482 9.10944 9.33096 9.92875 10.58057 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014543 B = 0.003361 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.914912 B = 8328.156367 C = 9989.136903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C -0.082 4.082 3 C 0.229 3.771 4 N -0.414 5.414 5 C -0.315 4.315 6 H 0.111 0.889 7 C 0.036 3.964 8 N -0.839 5.839 9 Si 0.919 3.081 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.511 3.489 14 O -0.573 6.573 15 C 0.013 3.987 16 N -0.251 5.251 17 N -0.239 5.239 18 C 0.117 3.883 19 C -0.093 4.093 20 C -0.187 4.187 21 C 0.119 3.881 22 O -0.315 6.315 23 C 0.026 3.974 24 C -0.126 4.126 25 C -0.068 4.068 26 C -0.055 4.055 27 C 0.045 3.955 28 O -0.454 6.454 29 H 0.193 0.807 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.271 0.729 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.100 0.900 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.142 0.858 39 H 0.153 0.847 40 H 0.180 0.820 41 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.801 20.474 3.842 21.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 C -0.084 4.084 3 C 0.106 3.894 4 N -0.130 5.130 5 C -0.443 4.443 6 H 0.129 0.871 7 C -0.171 4.171 8 N -0.475 5.475 9 Si 0.745 3.255 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.192 1.192 13 C 0.299 3.701 14 O -0.456 6.456 15 C -0.149 4.149 16 N -0.084 5.084 17 N -0.021 5.021 18 C 0.025 3.975 19 C -0.114 4.114 20 C -0.206 4.206 21 C 0.073 3.927 22 O -0.228 6.228 23 C -0.069 4.069 24 C -0.146 4.146 25 C -0.087 4.087 26 C -0.195 4.195 27 C -0.010 4.010 28 O -0.259 6.259 29 H 0.210 0.790 30 H 0.116 0.884 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.153 0.847 34 H 0.154 0.846 35 H 0.118 0.882 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.160 0.840 39 H 0.171 0.829 40 H 0.197 0.803 41 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -5.671 20.033 5.024 21.418 hybrid contribution -0.117 -0.467 -1.070 1.173 sum -5.789 19.567 3.955 20.785 Atomic orbital electron populations 1.24039 0.95136 1.07752 1.02596 1.22745 0.93808 0.93928 0.97918 1.18484 0.84995 0.98424 0.87497 1.43662 1.53652 1.07098 1.08611 1.19753 1.34467 0.80341 1.09726 0.87115 1.25327 0.94952 0.99787 0.97066 1.70193 1.17867 1.36785 1.22656 0.86040 0.79500 0.80760 0.79177 1.20148 1.21078 1.19153 1.16499 0.86843 0.82243 0.84564 1.90644 1.48697 1.77551 1.28661 1.23177 1.01798 0.97048 0.92846 1.74143 1.18354 0.91558 1.24371 1.42297 1.40152 1.06041 1.13605 1.17504 1.00183 0.88730 0.91046 1.20585 0.99780 0.90636 1.00410 1.20978 1.04270 1.00610 0.94737 1.19083 0.93687 0.90665 0.89278 1.86096 1.72811 1.20143 1.43774 1.23081 1.01777 0.80018 1.02033 1.20349 1.02631 0.90130 1.01449 1.20905 0.95389 1.01467 0.90969 1.22701 1.05508 1.01295 0.89963 1.18132 1.01670 0.90683 0.90527 1.84858 1.34970 1.92189 1.13845 0.78951 0.88368 0.90047 0.91855 0.84731 0.84568 0.88180 0.92541 0.92550 0.84025 0.82927 0.80260 0.76123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -6.03 19.25 29.55 0.57 -5.46 16 2 C -0.08 -1.93 10.07 -37.12 -0.37 -2.30 16 3 C 0.23 5.44 4.75 -6.83 -0.03 5.40 16 4 N -0.41 -11.02 2.58 -119.19 -0.31 -11.33 16 5 C -0.32 -8.80 9.37 -15.00 -0.14 -8.94 16 6 H 0.11 3.24 7.34 -52.49 -0.39 2.85 16 7 C 0.04 0.93 4.77 -17.46 -0.08 0.85 16 8 N -0.84 -21.94 9.48 55.50 0.53 -21.41 16 9 Si 0.92 20.31 29.63 -169.99 -5.04 15.27 16 10 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 13 C 0.51 13.52 7.59 -12.55 -0.10 13.43 16 14 O -0.57 -16.56 16.15 3.25 0.05 -16.51 16 15 C 0.01 0.30 6.74 -82.67 -0.56 -0.26 16 16 N -0.25 -5.01 6.85 33.45 0.23 -4.78 16 17 N -0.24 -3.93 3.52 -10.39 -0.04 -3.97 16 18 C 0.12 1.60 6.66 -83.58 -0.56 1.04 16 19 C -0.09 -0.97 9.43 -39.41 -0.37 -1.34 16 20 C -0.19 -1.69 9.03 -39.46 -0.36 -2.04 16 21 C 0.12 1.23 6.69 -39.19 -0.26 0.96 16 22 O -0.32 -2.97 10.50 -19.50 -0.20 -3.17 16 23 C 0.03 0.14 9.81 101.05 0.99 1.13 16 24 C -0.13 -1.43 9.98 -39.46 -0.39 -1.83 16 25 C -0.07 -0.91 9.59 -39.42 -0.38 -1.29 16 26 C -0.05 -0.83 10.80 -16.54 -0.18 -1.01 16 27 C 0.05 0.86 7.35 -39.09 -0.29 0.57 16 28 O -0.45 -8.13 13.21 -22.00 -0.29 -8.42 16 29 H 0.19 3.53 7.80 -54.10 -0.42 3.11 16 30 H 0.10 2.39 6.54 -51.93 -0.34 2.05 16 31 H 0.08 1.79 5.68 -51.93 -0.29 1.49 16 32 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 33 H 0.13 1.09 6.64 -52.49 -0.35 0.74 16 34 H 0.14 0.83 6.29 -52.49 -0.33 0.50 16 35 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.24 7.66 -51.93 -0.40 -0.15 16 37 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 38 H 0.14 1.40 8.06 -52.48 -0.42 0.98 16 39 H 0.15 2.28 7.64 -52.49 -0.40 1.88 16 40 H 0.18 1.90 6.96 -52.49 -0.37 1.54 16 41 H 0.38 5.21 9.07 45.56 0.41 5.62 16 LS Contribution 358.90 15.07 5.41 5.41 Total: -1.00 -34.79 358.90 -5.42 -40.20 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -3.25 Total: 9.80 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -2.51 Total: -1.09 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.41 Total: -41.49 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.44 Total: -28.11 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.04 Total: 15.27 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.79 -5.42 -40.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491021536.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.955 kcal (2) G-P(sol) polarization free energy of solvation -34.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds