Wall clock time and date at job start Sat Apr 11 2020 06:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46497 * 109.46931 * 69.68797 * 3 2 1 5 5 C 1.36912 * 120.00334 * 268.40202 * 4 3 2 6 6 H 1.08001 * 119.99523 * 192.30716 * 5 4 3 7 7 C 1.39006 * 119.99803 * 12.30214 * 5 4 3 8 8 N 1.31383 * 120.00541 * 27.38219 * 7 5 4 9 9 Si 1.86800 * 119.99843 * 207.38157 * 7 5 4 10 10 H 1.48503 * 109.47015 * 90.00269 * 9 7 5 11 11 H 1.48499 * 109.47452 * 210.00048 * 9 7 5 12 12 H 1.48505 * 109.47281 * 330.00158 * 9 7 5 13 13 C 1.34785 * 119.99551 * 88.40059 * 4 3 2 14 14 O 1.21635 * 119.99408 * 173.39682 * 13 4 3 15 15 C 1.47342 * 120.00244 * 353.67159 * 13 4 3 16 16 N 1.32081 * 126.45256 * 355.12296 * 15 13 4 17 17 N 1.28461 * 110.20454 * 179.97438 * 16 15 13 18 18 C 1.40139 * 124.93095 * 179.97438 * 17 16 15 19 19 C 1.38877 * 120.01538 * 179.75518 * 18 17 16 20 20 C 1.38053 * 119.98498 * 179.77145 * 19 18 17 21 21 C 1.38756 * 120.01229 * 0.50523 * 20 19 18 22 22 O 1.35925 * 119.98991 * 179.76747 * 21 20 19 23 23 C 1.42905 * 116.99460 * 359.97438 * 22 21 20 24 24 C 1.38766 * 120.02872 * 359.74625 * 21 20 19 25 25 C 1.38041 * 120.01391 * 0.02562 * 24 21 20 26 26 C 1.36113 * 110.14262 * 0.02562 * 17 16 15 27 27 C 1.35752 * 107.08084 * 359.72380 * 26 17 16 28 28 O 1.36082 * 127.26305 * 180.29872 * 27 26 17 29 29 H 4.40642 * 5.51318 * 180.02562 * 4 1 2 30 30 H 1.09003 * 109.47040 * 309.69225 * 3 2 1 31 31 H 1.08994 * 109.46505 * 189.68951 * 3 2 1 32 32 H 0.97002 * 120.00705 * 179.97438 * 8 7 5 33 33 H 1.07997 * 120.01006 * 0.02562 * 19 18 17 34 34 H 1.07994 * 119.99122 * 180.22818 * 20 19 18 35 35 H 1.09002 * 109.47021 * 179.97438 * 23 22 21 36 36 H 1.08997 * 109.47193 * 300.00466 * 23 22 21 37 37 H 1.09002 * 109.46912 * 60.00068 * 23 22 21 38 38 H 1.08004 * 119.99499 * 179.97438 * 24 21 20 39 39 H 1.07999 * 120.00502 * 180.02562 * 25 24 21 40 40 H 1.07998 * 126.46075 * 179.97438 * 26 17 16 41 41 H 0.96704 * 113.99601 * 270.14170 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1346 -0.4786 -1.2953 5 6 3.3945 -1.8102 -1.4789 6 1 3.9366 -2.1390 -2.3533 7 6 2.9608 -2.7389 -0.5399 8 7 1.9013 -2.4851 0.1943 9 14 3.8845 -4.3478 -0.3220 10 1 4.9438 -4.1753 0.7044 11 1 2.9391 -5.4061 0.1156 12 1 4.5050 -4.7412 -1.6125 13 6 3.3280 0.3915 -2.3064 14 8 3.8457 0.0160 -3.3410 15 6 2.9181 1.7987 -2.1560 16 7 2.2726 2.3227 -1.1296 17 7 2.0744 3.5770 -1.3237 18 6 1.4171 4.4332 -0.4299 19 6 1.2634 5.7777 -0.7417 20 6 0.6116 6.6196 0.1370 21 6 0.1194 6.1249 1.3363 22 8 -0.5181 6.9552 2.2033 23 6 -0.6450 8.3247 1.8153 24 6 0.2773 4.7826 1.6508 25 6 0.9246 3.9387 0.7708 26 6 2.5945 3.9536 -2.5238 27 6 3.1474 2.8473 -3.0835 28 8 3.7853 2.7617 -4.2825 29 1 -1.0499 0.0002 -0.0001 30 1 3.0097 -0.6555 0.7908 31 1 3.0088 1.0138 0.1730 32 1 1.5984 -3.1333 0.8493 33 1 1.6500 6.1638 -1.6733 34 1 0.4887 7.6644 -0.1070 35 1 -1.1721 8.8757 2.5943 36 1 0.3461 8.7552 1.6725 37 1 -1.2063 8.3877 0.8831 38 1 -0.1057 4.3981 2.5846 39 1 1.0471 2.8940 1.0155 40 1 2.5749 4.9463 -2.9487 41 1 3.2010 2.5552 -5.0250 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491021536.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:59 Heat of formation + Delta-G solvation = 69.509763 kcal Electronic energy + Delta-G solvation = -29125.344822 eV Core-core repulsion = 24975.613553 eV Total energy + Delta-G solvation = -4149.731269 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.88060 -41.11519 -40.25134 -38.72350 -37.99759 -37.01345 -34.33493 -33.60292 -33.00980 -32.43754 -31.02684 -29.89682 -28.41550 -27.99953 -26.90368 -24.76621 -24.25432 -22.64187 -21.99294 -21.01249 -19.77550 -19.58280 -19.01527 -18.43783 -18.27234 -17.85204 -17.20011 -16.94417 -16.66227 -16.60374 -16.02792 -15.82072 -15.67681 -15.37477 -15.11387 -14.67710 -14.64654 -14.44749 -14.21759 -14.14643 -13.81368 -13.64111 -13.58440 -12.94797 -12.80640 -12.51530 -12.32670 -12.18393 -12.13684 -11.84870 -11.34693 -11.20724 -11.04319 -10.72911 -10.62157 -10.40335 -10.18373 -10.02361 -9.88897 -8.83796 -8.39763 -5.90696 -0.26742 0.19527 0.74513 1.14073 1.35538 1.41642 1.44310 1.54912 2.06560 2.32776 2.33347 2.40514 2.53541 2.66449 2.93077 3.05368 3.34583 3.59899 3.74540 3.80862 3.90267 3.97241 4.07719 4.11231 4.31094 4.43418 4.47783 4.54546 4.61857 4.66645 4.79247 4.85923 4.91281 4.92873 5.10158 5.15363 5.25072 5.43535 5.45120 5.47692 5.92399 6.02217 6.36756 6.39240 6.80063 6.84706 7.07509 7.24799 7.33501 7.92581 8.57671 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014543 B = 0.003361 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.914912 B = 8328.156367 C = 9989.136903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.114 4.114 3 C 0.241 3.759 4 N -0.428 5.428 5 C -0.361 4.361 6 H 0.082 0.918 7 C 0.009 3.991 8 N -0.852 5.852 9 Si 0.987 3.013 10 H -0.265 1.265 11 H -0.273 1.273 12 H -0.274 1.274 13 C 0.501 3.499 14 O -0.615 6.615 15 C -0.035 4.035 16 N -0.258 5.258 17 N -0.225 5.225 18 C 0.075 3.925 19 C -0.074 4.074 20 C -0.177 4.177 21 C 0.128 3.872 22 O -0.330 6.330 23 C 0.013 3.987 24 C -0.138 4.138 25 C -0.079 4.079 26 C -0.022 4.022 27 C 0.022 3.978 28 O -0.465 6.465 29 H 0.226 0.774 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.277 0.723 33 H 0.168 0.832 34 H 0.176 0.824 35 H 0.117 0.883 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.147 0.853 39 H 0.126 0.874 40 H 0.237 0.763 41 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.342 24.196 4.609 25.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 C -0.116 4.116 3 C 0.118 3.882 4 N -0.144 5.144 5 C -0.488 4.488 6 H 0.100 0.900 7 C -0.197 4.197 8 N -0.487 5.487 9 Si 0.810 3.190 10 H -0.190 1.190 11 H -0.198 1.198 12 H -0.199 1.199 13 C 0.290 3.710 14 O -0.501 6.501 15 C -0.195 4.195 16 N -0.094 5.094 17 N -0.008 5.008 18 C -0.015 4.015 19 C -0.094 4.094 20 C -0.196 4.196 21 C 0.082 3.918 22 O -0.243 6.243 23 C -0.081 4.081 24 C -0.158 4.158 25 C -0.099 4.099 26 C -0.163 4.163 27 C -0.033 4.033 28 O -0.272 6.272 29 H 0.243 0.757 30 H 0.102 0.898 31 H 0.110 0.890 32 H 0.087 0.913 33 H 0.186 0.814 34 H 0.193 0.807 35 H 0.135 0.865 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.165 0.835 39 H 0.144 0.856 40 H 0.253 0.747 41 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -7.247 23.767 5.834 25.523 hybrid contribution 0.163 -1.295 -1.176 1.757 sum -7.084 22.473 4.658 24.019 Atomic orbital electron populations 1.24814 0.96002 1.06320 1.01058 1.22862 0.94170 0.95244 0.99302 1.18355 0.85624 0.98371 0.85857 1.43817 1.54087 1.06879 1.09615 1.19640 1.36819 0.81835 1.10510 0.90024 1.26062 0.95081 1.02589 0.95952 1.70256 1.18050 1.37897 1.22498 0.85054 0.78416 0.76759 0.78793 1.18969 1.19776 1.19914 1.17133 0.85811 0.84098 0.83933 1.90567 1.50366 1.79082 1.30114 1.22704 1.05203 0.95885 0.95674 1.74002 1.18015 0.93468 1.23908 1.42634 1.38706 1.05190 1.14252 1.17880 1.02561 0.89851 0.91218 1.20961 0.98176 0.88762 1.01534 1.21385 1.02550 1.02204 0.93447 1.19214 0.92540 0.90331 0.89724 1.86099 1.72213 1.22013 1.43988 1.23451 1.03238 0.77844 1.03540 1.20396 1.02908 0.90974 1.01480 1.20766 0.96504 1.00709 0.91894 1.23323 1.02414 1.02141 0.88375 1.18325 1.03264 0.90946 0.90798 1.84804 1.36074 1.92155 1.14185 0.75750 0.89850 0.89021 0.91299 0.81444 0.80690 0.86481 0.91027 0.91062 0.83496 0.85572 0.74703 0.74429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -11.59 19.25 74.32 1.43 -10.16 16 2 C -0.11 -5.54 10.07 31.13 0.31 -5.22 16 3 C 0.24 12.09 4.75 84.58 0.40 12.49 16 4 N -0.43 -24.37 2.58 -649.23 -1.68 -26.04 16 5 C -0.36 -21.50 9.37 84.08 0.79 -20.71 16 6 H 0.08 5.20 7.34 -2.91 -0.02 5.18 16 7 C 0.01 0.50 4.77 84.94 0.40 0.91 16 8 N -0.85 -45.67 9.48 21.67 0.21 -45.46 16 9 Si 0.99 42.91 29.63 68.60 2.03 44.95 16 10 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 11 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 12 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 13 C 0.50 28.40 7.59 86.64 0.66 29.05 16 14 O -0.62 -38.29 16.15 -2.23 -0.04 -38.33 16 15 C -0.04 -1.64 6.74 42.40 0.29 -1.35 16 16 N -0.26 -10.55 6.85 -48.08 -0.33 -10.88 16 17 N -0.23 -7.13 3.52 -186.77 -0.66 -7.79 16 18 C 0.07 1.89 6.66 38.12 0.25 2.14 16 19 C -0.07 -1.20 9.43 22.38 0.21 -0.98 16 20 C -0.18 -2.30 9.03 22.35 0.20 -2.10 16 21 C 0.13 2.22 6.69 22.52 0.15 2.37 16 22 O -0.33 -5.05 10.50 -92.70 -0.97 -6.02 16 23 C 0.01 0.08 9.81 113.37 1.11 1.19 16 24 C -0.14 -2.95 9.98 22.35 0.22 -2.73 16 25 C -0.08 -2.08 9.59 22.38 0.21 -1.87 16 26 C -0.02 -0.61 10.80 83.45 0.90 0.30 16 27 C 0.02 0.84 7.35 22.59 0.17 1.01 16 28 O -0.47 -16.83 13.21 -92.57 -1.22 -18.05 16 29 H 0.23 7.97 7.80 -4.42 -0.03 7.93 16 30 H 0.08 4.32 6.54 -2.39 -0.02 4.30 16 31 H 0.09 4.31 5.68 -2.39 -0.01 4.30 16 32 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 33 H 0.17 1.57 6.64 -2.91 -0.02 1.55 16 34 H 0.18 0.94 6.29 -2.91 -0.02 0.93 16 35 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 36 H 0.07 0.25 7.66 -2.39 -0.02 0.23 16 37 H 0.07 0.25 7.66 -2.39 -0.02 0.23 16 38 H 0.15 2.83 8.06 -2.91 -0.02 2.80 16 39 H 0.13 3.96 7.64 -2.91 -0.02 3.94 16 40 H 0.24 3.63 6.96 -2.91 -0.02 3.61 16 41 H 0.40 11.02 9.07 -74.05 -0.67 10.35 16 Total: -1.00 -82.40 358.90 5.49 -76.90 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: 0.43 Total: 26.40 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 7.72 Total: 4.33 kcal Atomic # 7 Polarization: -87.72 SS G_CDS: -2.46 Total: -90.18 kcal Atomic # 8 Polarization: -60.17 SS G_CDS: -2.23 Total: -62.40 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.95 kcal Total: -82.40 5.49 -76.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491021536.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.413 kcal (2) G-P(sol) polarization free energy of solvation -82.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds