Wall clock time and date at job start Sat Apr 11 2020 06:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35946 * 116.99797 * 2 1 4 4 C 1.38076 * 120.00411 * 359.97438 * 3 2 1 5 5 C 1.39973 * 119.84187 * 179.97438 * 4 3 2 6 6 C 1.46969 * 120.08210 * 179.97438 * 5 4 3 7 7 C 1.35018 * 120.00425 * 136.90619 * 6 5 4 8 8 C 1.46263 * 119.99768 * 346.78881 * 7 6 5 9 9 O 1.21722 * 119.99623 * 353.60670 * 8 7 6 10 10 N 1.34781 * 119.99720 * 173.60810 * 8 7 6 11 11 C 1.46499 * 120.00047 * 359.97438 * 10 8 7 12 12 C 1.46499 * 119.99660 * 179.97438 * 10 8 7 13 13 C 1.52998 * 109.47124 * 89.99758 * 12 10 8 14 14 F 1.39905 * 109.47325 * 300.00042 * 13 12 10 15 15 F 1.39899 * 109.47081 * 60.00243 * 13 12 10 16 16 C 1.40029 * 119.84260 * 0.25953 * 5 4 3 17 17 C 1.37650 * 119.99675 * 359.48450 * 16 5 4 18 18 C 1.39049 * 120.16201 * 0.51826 * 17 16 5 19 19 O 1.35615 * 119.92126 * 179.76080 * 18 17 16 20 20 C 1.34766 * 117.00153 * 355.39782 * 19 18 17 21 21 H 1.08000 * 119.99801 * 5.02293 * 20 19 18 22 22 C 1.38705 * 120.00077 * 185.01992 * 20 19 18 23 23 N 1.31516 * 120.00039 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 120.00087 * 0.02562 * 22 20 19 25 25 H 1.48508 * 109.47216 * 89.99765 * 24 22 20 26 26 H 1.48499 * 109.47352 * 209.99687 * 24 22 20 27 27 H 1.48498 * 109.47239 * 329.99694 * 24 22 20 28 28 H 1.08994 * 109.47507 * 59.99736 * 1 2 3 29 29 H 1.09001 * 109.46979 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46624 * 299.99455 * 1 2 3 31 31 H 1.08004 * 120.07960 * 359.96230 * 4 3 2 32 32 H 1.07999 * 119.99370 * 316.90829 * 6 5 4 33 33 H 1.07992 * 120.00263 * 167.06333 * 7 6 5 34 34 H 1.08994 * 109.47122 * 90.00238 * 11 10 8 35 35 H 1.08999 * 109.46796 * 210.00043 * 11 10 8 36 36 H 1.08998 * 109.46804 * 329.99837 * 11 10 8 37 37 H 1.09001 * 109.46865 * 210.00124 * 12 10 8 38 38 H 1.09004 * 109.47243 * 329.99923 * 12 10 8 39 39 H 1.09000 * 109.46938 * 179.97438 * 13 12 10 40 40 H 1.08002 * 120.00145 * 179.74189 * 16 5 4 41 41 H 1.08009 * 119.91814 * 180.22757 * 17 16 5 42 42 H 0.96994 * 120.00353 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2942 2.3693 -0.0005 5 6 1.9332 3.6147 0.0000 6 6 1.1379 4.8507 -0.0011 7 6 1.4897 5.8806 0.7979 8 6 2.4697 5.6771 1.8645 9 8 2.8809 4.5575 2.1075 10 7 2.9173 6.7292 2.5781 11 6 2.4226 8.0767 2.2851 12 6 3.8984 6.5253 3.6467 13 6 5.3112 6.6414 3.0709 14 9 5.4922 5.6704 2.0801 15 9 5.4850 7.9133 2.5148 16 6 3.3319 3.6803 -0.0044 17 6 4.0751 2.5217 0.0015 18 6 3.4405 1.2845 0.0009 19 8 4.1776 0.1461 0.0018 20 6 5.5149 0.2830 -0.0932 21 1 5.9589 1.2675 -0.0837 22 6 6.3210 -0.8404 -0.2030 23 7 7.6260 -0.7068 -0.2961 24 14 5.5529 -2.5431 -0.2200 25 1 5.2446 -2.9331 -1.6194 26 1 6.5033 -3.5208 0.3684 27 1 4.3003 -2.5290 0.5774 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 0.2156 2.3144 -0.0016 32 1 0.2721 4.9350 -0.6412 33 1 1.0442 6.8536 0.6525 34 1 1.5369 8.2776 2.8877 35 1 3.1963 8.8071 2.5217 36 1 2.1668 8.1479 1.2280 37 1 3.7573 7.2818 4.4187 38 1 3.7630 5.5343 4.0801 39 1 6.0411 6.4901 3.8661 40 1 3.8276 4.6398 -0.0082 41 1 5.1540 2.5738 0.0018 42 1 8.1897 -1.4923 -0.3733 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491494595.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:09 Heat of formation + Delta-G solvation = -128.692901 kcal Electronic energy + Delta-G solvation = -30424.912543 eV Core-core repulsion = 25815.897375 eV Total energy + Delta-G solvation = -4609.015168 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -48.86196 -46.85186 -40.02457 -39.35849 -37.60942 -36.58276 -35.32814 -33.06171 -32.25719 -30.51406 -29.48576 -28.58179 -26.78706 -26.43020 -25.27008 -24.12130 -22.35851 -21.46740 -20.60890 -18.68272 -18.03339 -17.75476 -17.62439 -17.18863 -16.88485 -16.52520 -16.27261 -15.40509 -15.25160 -15.17227 -14.75588 -14.30642 -14.10900 -13.80683 -13.71327 -13.58300 -13.47882 -13.22534 -13.14519 -12.94559 -12.76376 -12.53688 -12.50282 -12.21957 -12.18693 -12.07269 -11.53043 -11.43679 -11.27504 -10.99333 -10.78912 -10.64976 -10.43860 -10.14260 -9.53656 -9.33356 -9.15011 -8.76083 -8.69580 -7.77153 -6.75127 -6.36645 -3.96826 1.11855 2.27825 2.58623 2.87318 3.29433 3.33455 3.47016 3.52861 3.84952 3.99130 4.22011 4.32626 4.35119 4.59428 4.68925 4.83872 4.85258 4.95875 5.09686 5.16226 5.18838 5.29392 5.42084 5.43067 5.49514 5.52628 5.57290 5.63788 5.80280 5.87797 6.09807 6.25323 6.31060 6.41052 6.51633 6.65710 6.99788 7.14771 7.34412 7.44463 7.60858 7.74531 8.02365 8.22914 8.40003 8.98595 9.63690 10.70300 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.011842 B = 0.003872 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.824713 B = 7229.573210 C = 9142.463303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.311 6.311 3 C 0.039 3.961 4 C -0.136 4.136 5 C -0.149 4.149 6 C 0.024 3.976 7 C -0.260 4.260 8 C 0.542 3.458 9 O -0.497 6.497 10 N -0.623 5.623 11 C 0.081 3.919 12 C 0.070 3.930 13 C 0.242 3.758 14 F -0.188 7.188 15 F -0.210 7.210 16 C -0.011 4.011 17 C -0.204 4.204 18 C 0.158 3.842 19 O -0.199 6.199 20 C -0.384 4.384 21 H 0.108 0.892 22 C 0.064 3.936 23 N -0.876 5.876 24 Si 0.903 3.097 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.255 1.255 28 H 0.046 0.954 29 H 0.089 0.911 30 H 0.045 0.955 31 H 0.118 0.882 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.101 0.899 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.104 0.896 41 H 0.138 0.862 42 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.756 17.482 5.915 22.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.226 6.226 3 C -0.006 4.006 4 C -0.155 4.155 5 C -0.151 4.151 6 C 0.004 3.996 7 C -0.281 4.281 8 C 0.333 3.667 9 O -0.372 6.372 10 N -0.359 5.359 11 C -0.062 4.062 12 C -0.055 4.055 13 C 0.187 3.813 14 F -0.169 7.169 15 F -0.192 7.192 16 C -0.029 4.029 17 C -0.224 4.224 18 C 0.105 3.895 19 O -0.103 6.103 20 C -0.459 4.459 21 H 0.126 0.874 22 C -0.139 4.139 23 N -0.513 5.513 24 Si 0.729 3.271 25 H -0.199 1.199 26 H -0.209 1.209 27 H -0.179 1.179 28 H 0.064 0.936 29 H 0.107 0.893 30 H 0.064 0.936 31 H 0.136 0.864 32 H 0.142 0.858 33 H 0.143 0.857 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.120 0.880 38 H 0.132 0.868 39 H 0.130 0.870 40 H 0.122 0.878 41 H 0.155 0.845 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.268 16.309 6.007 21.274 hybrid contribution -0.265 -0.133 -0.016 0.297 sum -12.534 16.176 5.991 21.323 Atomic orbital electron populations 1.22861 0.80437 1.02742 1.00318 1.86159 1.19412 1.26704 1.90276 1.17911 0.89201 0.84351 1.09123 1.20671 0.98027 0.90891 1.05925 1.18112 0.92934 0.91280 1.12730 1.22331 0.93941 0.91403 0.91878 1.22685 1.05127 1.00074 1.00221 1.18566 0.81385 0.84022 0.82719 1.91012 1.56656 1.22306 1.67207 1.47701 1.43834 1.08236 1.36136 1.21834 0.99470 0.82948 1.01995 1.22500 0.86059 1.06172 0.90745 1.22490 0.99760 0.71822 0.87201 1.93098 1.96417 1.62554 1.64831 1.92944 1.96710 1.41589 1.87945 1.20596 0.91791 0.96920 0.93616 1.20862 1.00892 0.90559 1.10066 1.18560 0.87650 0.86931 0.96407 1.83579 1.20095 1.27437 1.79220 1.20872 0.77190 0.97083 1.50790 0.87443 1.24464 0.94504 0.99421 0.95529 1.69635 1.02958 1.31595 1.47132 0.86192 0.79842 0.81747 0.79343 1.19851 1.20879 1.17881 0.93557 0.89260 0.93601 0.86387 0.85846 0.85680 0.92804 0.90973 0.90595 0.88040 0.86798 0.87004 0.87826 0.84463 0.91043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.81 101.05 0.99 1.46 16 2 O -0.31 -6.65 10.28 -34.19 -0.35 -7.00 16 3 C 0.04 0.86 6.70 -39.12 -0.26 0.60 16 4 C -0.14 -2.53 8.77 -38.99 -0.34 -2.88 16 5 C -0.15 -2.73 4.49 -105.04 -0.47 -3.20 16 6 C 0.02 0.33 9.79 -37.19 -0.36 -0.04 16 7 C -0.26 -3.27 9.00 -37.50 -0.34 -3.60 16 8 C 0.54 8.04 6.24 -13.03 -0.08 7.96 16 9 O -0.50 -9.52 11.33 5.17 0.06 -9.47 16 10 N -0.62 -7.10 2.79 -183.29 -0.51 -7.61 16 11 C 0.08 0.61 9.90 59.85 0.59 1.20 16 12 C 0.07 0.69 5.70 -4.04 -0.02 0.66 16 13 C 0.24 2.66 5.60 37.16 0.21 2.87 16 14 F -0.19 -3.09 16.26 2.25 0.04 -3.05 16 15 F -0.21 -2.42 16.25 2.25 0.04 -2.39 16 16 C -0.01 -0.22 6.68 -39.13 -0.26 -0.48 16 17 C -0.20 -4.88 9.14 -39.50 -0.36 -5.24 16 18 C 0.16 4.02 6.67 -38.76 -0.26 3.76 16 19 O -0.20 -5.68 8.35 -13.97 -0.12 -5.80 16 20 C -0.38 -11.37 9.94 30.90 0.31 -11.06 16 21 H 0.11 3.25 5.41 -52.49 -0.28 2.96 16 22 C 0.06 1.88 5.49 -17.51 -0.10 1.78 16 23 N -0.88 -25.99 13.96 55.48 0.77 -25.21 16 24 Si 0.90 22.76 28.62 -169.99 -4.86 17.90 16 25 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.26 -6.59 7.11 56.52 0.40 -6.18 16 28 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 29 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.05 0.61 7.66 -51.93 -0.40 0.21 16 31 H 0.12 1.79 6.28 -52.48 -0.33 1.46 16 32 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.13 1.12 6.33 -52.49 -0.33 0.79 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.49 7.25 -51.93 -0.38 0.11 16 36 H 0.08 0.54 6.19 -51.93 -0.32 0.22 16 37 H 0.10 0.62 8.07 -51.93 -0.42 0.20 16 38 H 0.11 1.27 7.42 -51.93 -0.39 0.89 16 39 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.10 2.07 7.10 -52.49 -0.37 1.70 16 41 H 0.14 3.45 5.61 -52.48 -0.29 3.15 16 42 H 0.28 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 358.87 15.07 5.41 5.41 Total: -1.00 -36.31 358.87 -5.03 -41.34 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -4.74 Total: 2.08 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -0.76 Total: -6.20 kcal Atomic # 7 Polarization: -33.08 SS G_CDS: 0.26 Total: -32.82 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.41 Total: -22.26 kcal Atomic # 9 Polarization: -5.51 SS G_CDS: 0.07 Total: -5.44 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -4.86 Total: 17.90 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -36.31 -5.03 -41.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491494595.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.358 kcal (2) G-P(sol) polarization free energy of solvation -36.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds