Wall clock time and date at job start Sat Apr 11 2020 06:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35946 * 116.99797 * 2 1 4 4 C 1.38076 * 120.00411 * 359.97438 * 3 2 1 5 5 C 1.39973 * 119.84187 * 179.97438 * 4 3 2 6 6 C 1.46969 * 120.08210 * 179.97438 * 5 4 3 7 7 C 1.35018 * 120.00425 * 136.90619 * 6 5 4 8 8 C 1.46263 * 119.99768 * 346.78881 * 7 6 5 9 9 O 1.21722 * 119.99623 * 353.60670 * 8 7 6 10 10 N 1.34781 * 119.99720 * 173.60810 * 8 7 6 11 11 C 1.46499 * 120.00047 * 359.97438 * 10 8 7 12 12 C 1.46499 * 119.99660 * 179.97438 * 10 8 7 13 13 C 1.52998 * 109.47124 * 89.99758 * 12 10 8 14 14 F 1.39905 * 109.47325 * 300.00042 * 13 12 10 15 15 F 1.39899 * 109.47081 * 60.00243 * 13 12 10 16 16 C 1.40029 * 119.84260 * 0.25953 * 5 4 3 17 17 C 1.37650 * 119.99675 * 359.48450 * 16 5 4 18 18 C 1.39049 * 120.16201 * 0.51826 * 17 16 5 19 19 O 1.35615 * 119.92126 * 179.76080 * 18 17 16 20 20 C 1.34766 * 117.00153 * 355.39782 * 19 18 17 21 21 H 1.08000 * 119.99801 * 5.02293 * 20 19 18 22 22 C 1.38705 * 120.00077 * 185.01992 * 20 19 18 23 23 N 1.31516 * 120.00039 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 120.00087 * 0.02562 * 22 20 19 25 25 H 1.48508 * 109.47216 * 89.99765 * 24 22 20 26 26 H 1.48499 * 109.47352 * 209.99687 * 24 22 20 27 27 H 1.48498 * 109.47239 * 329.99694 * 24 22 20 28 28 H 1.08994 * 109.47507 * 59.99736 * 1 2 3 29 29 H 1.09001 * 109.46979 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46624 * 299.99455 * 1 2 3 31 31 H 1.08004 * 120.07960 * 359.96230 * 4 3 2 32 32 H 1.07999 * 119.99370 * 316.90829 * 6 5 4 33 33 H 1.07992 * 120.00263 * 167.06333 * 7 6 5 34 34 H 1.08994 * 109.47122 * 90.00238 * 11 10 8 35 35 H 1.08999 * 109.46796 * 210.00043 * 11 10 8 36 36 H 1.08998 * 109.46804 * 329.99837 * 11 10 8 37 37 H 1.09001 * 109.46865 * 210.00124 * 12 10 8 38 38 H 1.09004 * 109.47243 * 329.99923 * 12 10 8 39 39 H 1.09000 * 109.46938 * 179.97438 * 13 12 10 40 40 H 1.08002 * 120.00145 * 179.74189 * 16 5 4 41 41 H 1.08009 * 119.91814 * 180.22757 * 17 16 5 42 42 H 0.96994 * 120.00353 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2942 2.3693 -0.0005 5 6 1.9332 3.6147 0.0000 6 6 1.1379 4.8507 -0.0011 7 6 1.4897 5.8806 0.7979 8 6 2.4697 5.6771 1.8645 9 8 2.8809 4.5575 2.1075 10 7 2.9173 6.7292 2.5781 11 6 2.4226 8.0767 2.2851 12 6 3.8984 6.5253 3.6467 13 6 5.3112 6.6414 3.0709 14 9 5.4922 5.6704 2.0801 15 9 5.4850 7.9133 2.5148 16 6 3.3319 3.6803 -0.0044 17 6 4.0751 2.5217 0.0015 18 6 3.4405 1.2845 0.0009 19 8 4.1776 0.1461 0.0018 20 6 5.5149 0.2830 -0.0932 21 1 5.9589 1.2675 -0.0837 22 6 6.3210 -0.8404 -0.2030 23 7 7.6260 -0.7068 -0.2961 24 14 5.5529 -2.5431 -0.2200 25 1 5.2446 -2.9331 -1.6194 26 1 6.5033 -3.5208 0.3684 27 1 4.3003 -2.5290 0.5774 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 0.2156 2.3144 -0.0016 32 1 0.2721 4.9350 -0.6412 33 1 1.0442 6.8536 0.6525 34 1 1.5369 8.2776 2.8877 35 1 3.1963 8.8071 2.5217 36 1 2.1668 8.1479 1.2280 37 1 3.7573 7.2818 4.4187 38 1 3.7630 5.5343 4.0801 39 1 6.0411 6.4901 3.8661 40 1 3.8276 4.6398 -0.0082 41 1 5.1540 2.5738 0.0018 42 1 8.1897 -1.4923 -0.3733 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491494595.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:08 Heat of formation + Delta-G solvation = -153.778679 kcal Electronic energy + Delta-G solvation = -30426.000344 eV Core-core repulsion = 25815.897375 eV Total energy + Delta-G solvation = -4610.102969 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.86063 -47.89521 -41.46056 -40.73312 -39.35199 -38.01724 -36.49364 -34.63491 -34.10277 -31.52197 -31.10026 -29.99684 -27.90711 -27.49783 -27.12721 -25.29810 -23.64180 -23.16419 -21.89973 -19.99803 -19.77448 -19.31401 -18.61251 -18.44486 -17.94729 -17.74850 -17.53716 -16.98834 -16.65925 -16.38305 -16.29820 -15.72775 -15.52704 -15.35603 -15.12644 -14.98730 -14.81968 -14.53781 -14.28950 -14.25835 -13.99633 -13.81143 -13.73276 -13.45173 -13.37304 -13.12391 -12.99856 -12.81102 -12.74494 -12.54274 -12.22234 -12.06225 -12.05699 -11.80343 -11.45360 -10.97740 -10.66719 -10.33288 -9.72549 -9.36263 -8.51620 -8.44526 -6.19210 -0.12400 0.60278 1.03430 1.27132 1.33689 1.52051 2.02112 2.28647 2.38509 2.55368 2.77436 2.98546 3.04323 3.11910 3.41554 3.54407 3.81985 3.88213 3.93751 4.06745 4.20578 4.33094 4.36291 4.43147 4.47228 4.52509 4.57712 4.59738 4.67984 4.74319 4.77358 4.93448 4.96467 5.10003 5.22367 5.37017 5.50590 5.54398 5.59699 5.78675 5.85203 6.06669 6.41391 6.64470 6.82613 7.31559 7.60343 8.60434 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.011842 B = 0.003872 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.824713 B = 7229.573210 C = 9142.463303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.345 6.345 3 C 0.041 3.959 4 C -0.133 4.133 5 C -0.111 4.111 6 C 0.002 3.998 7 C -0.228 4.228 8 C 0.522 3.478 9 O -0.553 6.553 10 N -0.620 5.620 11 C 0.072 3.928 12 C 0.069 3.931 13 C 0.231 3.769 14 F -0.226 7.226 15 F -0.212 7.212 16 C -0.022 4.022 17 C -0.213 4.213 18 C 0.102 3.898 19 O -0.235 6.235 20 C -0.399 4.399 21 H 0.076 0.924 22 C 0.013 3.987 23 N -0.921 5.921 24 Si 0.970 3.030 25 H -0.264 1.264 26 H -0.261 1.261 27 H -0.269 1.269 28 H 0.071 0.929 29 H 0.111 0.889 30 H 0.063 0.937 31 H 0.167 0.833 32 H 0.177 0.823 33 H 0.176 0.824 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.147 0.853 38 H 0.095 0.905 39 H 0.147 0.853 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.418 20.500 6.387 27.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.261 6.261 3 C -0.004 4.004 4 C -0.152 4.152 5 C -0.112 4.112 6 C -0.017 4.017 7 C -0.248 4.248 8 C 0.315 3.685 9 O -0.432 6.432 10 N -0.354 5.354 11 C -0.069 4.069 12 C -0.056 4.056 13 C 0.176 3.824 14 F -0.207 7.207 15 F -0.193 7.193 16 C -0.041 4.041 17 C -0.232 4.232 18 C 0.052 3.948 19 O -0.142 6.142 20 C -0.475 4.475 21 H 0.094 0.906 22 C -0.185 4.185 23 N -0.562 5.562 24 Si 0.792 3.208 25 H -0.188 1.188 26 H -0.186 1.186 27 H -0.194 1.194 28 H 0.089 0.911 29 H 0.130 0.870 30 H 0.081 0.919 31 H 0.184 0.816 32 H 0.194 0.806 33 H 0.193 0.807 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.165 0.835 38 H 0.113 0.887 39 H 0.164 0.836 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.978 19.426 6.489 26.603 hybrid contribution 0.856 -0.499 -0.021 0.991 sum -16.122 18.927 6.468 25.691 Atomic orbital electron populations 1.23299 0.76829 1.05088 1.02234 1.86116 1.23211 1.26569 1.90158 1.18143 0.88225 0.86136 1.07888 1.21186 1.00162 0.89468 1.04359 1.18709 0.92184 0.93770 1.06553 1.22637 0.95510 0.89051 0.94538 1.23203 1.02302 1.01582 0.97742 1.19224 0.81739 0.84037 0.83536 1.91016 1.58749 1.24701 1.68746 1.47846 1.43075 1.09087 1.35388 1.22141 1.00832 0.80727 1.03210 1.22661 0.84913 1.06766 0.91215 1.23039 1.01821 0.70737 0.86791 1.93032 1.96723 1.64331 1.66647 1.92931 1.96830 1.41476 1.88089 1.20609 0.93279 0.95483 0.94705 1.20776 0.99690 0.92004 1.10733 1.19113 0.89404 0.86633 0.99602 1.83521 1.18922 1.28717 1.83061 1.20746 0.78600 0.96259 1.51921 0.90628 1.25240 0.94941 1.02950 0.95414 1.69712 1.04001 1.32799 1.49694 0.85230 0.78498 0.77517 0.79513 1.18841 1.18577 1.19399 0.91090 0.87047 0.91865 0.81551 0.80576 0.80672 0.90140 0.89954 0.89634 0.83505 0.88674 0.83584 0.87699 0.87885 0.90483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 9.81 113.37 1.11 1.63 16 2 O -0.35 -14.69 10.28 -78.97 -0.81 -15.50 16 3 C 0.04 1.84 6.70 22.57 0.15 1.99 16 4 C -0.13 -4.64 8.77 22.65 0.20 -4.44 16 5 C -0.11 -3.82 4.49 -20.14 -0.09 -3.91 16 6 C 0.00 0.04 9.79 23.82 0.23 0.27 16 7 C -0.23 -4.54 9.00 23.62 0.21 -4.32 16 8 C 0.52 14.21 6.24 86.33 0.54 14.75 16 9 O -0.55 -21.14 11.33 -4.42 -0.05 -21.19 16 10 N -0.62 -12.21 2.79 -852.00 -2.38 -14.59 16 11 C 0.07 0.74 9.90 127.77 1.26 2.00 16 12 C 0.07 1.22 5.70 86.38 0.49 1.71 16 13 C 0.23 4.89 5.60 71.98 0.40 5.29 16 14 F -0.23 -7.81 16.26 44.97 0.73 -7.08 16 15 F -0.21 -4.53 16.25 44.97 0.73 -3.80 16 16 C -0.02 -0.94 6.68 22.56 0.15 -0.79 16 17 C -0.21 -11.09 9.14 22.33 0.20 -10.88 16 18 C 0.10 5.56 6.67 22.80 0.15 5.71 16 19 O -0.23 -14.52 8.35 -6.64 -0.06 -14.57 16 20 C -0.40 -25.99 9.94 67.93 0.68 -25.31 16 21 H 0.08 5.20 5.41 -2.91 -0.02 5.18 16 22 C 0.01 0.81 5.49 84.85 0.47 1.27 16 23 N -0.92 -58.47 13.96 21.62 0.30 -58.16 16 24 Si 0.97 49.68 28.62 68.60 1.96 51.65 16 25 H -0.26 -12.88 7.11 99.48 0.71 -12.17 16 26 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16 27 H -0.27 -14.23 7.11 99.48 0.71 -13.52 16 28 H 0.07 1.51 7.66 -2.39 -0.02 1.49 16 29 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.06 1.43 7.66 -2.38 -0.02 1.42 16 31 H 0.17 4.14 6.28 -2.91 -0.02 4.12 16 32 H 0.18 2.21 8.06 -2.91 -0.02 2.19 16 33 H 0.18 1.79 6.33 -2.91 -0.02 1.77 16 34 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.08 0.73 7.25 -2.39 -0.02 0.72 16 36 H 0.09 0.72 6.19 -2.39 -0.01 0.71 16 37 H 0.15 1.22 8.07 -2.39 -0.02 1.20 16 38 H 0.09 2.10 7.42 -2.38 -0.02 2.08 16 39 H 0.15 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.10 4.34 7.10 -2.91 -0.02 4.32 16 41 H 0.10 5.95 5.61 -2.91 -0.02 5.93 16 42 H 0.29 16.50 8.31 -92.71 -0.77 15.73 16 Total: -1.00 -91.46 358.87 7.67 -83.79 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 1.07 Total: 14.49 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: 6.16 Total: -15.03 kcal Atomic # 7 Polarization: -70.68 SS G_CDS: -2.08 Total: -72.75 kcal Atomic # 8 Polarization: -50.35 SS G_CDS: -0.92 Total: -51.27 kcal Atomic # 9 Polarization: -12.34 SS G_CDS: 1.46 Total: -10.87 kcal Atomic # 14 Polarization: 49.68 SS G_CDS: 1.96 Total: 51.65 kcal Total: -91.46 7.67 -83.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491494595.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.989 kcal (2) G-P(sol) polarization free energy of solvation -91.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds