Wall clock time and date at job start Sat Apr 11 2020 06:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47090 * 301.76017 * 3 2 1 5 5 C 1.36941 * 119.99796 * 264.10891 * 4 3 2 6 6 H 1.07993 * 120.00119 * 200.59853 * 5 4 3 7 7 C 1.38819 * 119.99973 * 20.59374 * 5 4 3 8 8 N 1.31619 * 119.99779 * 11.23968 * 7 5 4 9 9 Si 1.86799 * 119.99870 * 191.23690 * 7 5 4 10 10 H 1.48499 * 109.47041 * 84.98372 * 9 7 5 11 11 H 1.48508 * 109.46886 * 204.97945 * 9 7 5 12 12 H 1.48499 * 109.47217 * 324.97926 * 9 7 5 13 13 C 1.46492 * 120.00355 * 84.10597 * 4 3 2 14 14 C 1.50702 * 109.47211 * 270.00115 * 13 4 3 15 15 N 1.32433 * 118.53533 * 90.00166 * 14 13 4 16 16 C 1.32317 * 121.53709 * 180.02562 * 15 14 13 17 17 O 1.35279 * 120.87589 * 180.02562 * 16 15 14 18 18 C 1.41593 * 118.24919 * 359.97438 * 16 15 14 19 19 C 1.40093 * 121.88834 * 180.02562 * 18 16 15 20 20 C 1.36067 * 119.86681 * 179.97438 * 19 18 16 21 21 C 1.40453 * 120.78127 * 359.97438 * 20 19 18 22 22 C 1.47885 * 119.72403 * 179.97438 * 21 20 19 23 23 O 1.21454 * 119.99899 * 180.02562 * 22 21 20 24 24 O 1.34696 * 119.99915 * 0.02562 * 22 21 20 25 25 C 1.45197 * 116.99772 * 179.97438 * 24 22 21 26 26 C 1.38601 * 120.55252 * 0.02562 * 21 20 19 27 27 C 1.40115 * 119.36162 * 0.02562 * 26 21 20 28 28 N 1.31106 * 118.53630 * 270.02146 * 14 13 4 29 29 H 4.40648 * 5.51342 * 179.97438 * 4 1 2 30 30 H 1.08998 * 109.47062 * 181.75708 * 3 2 1 31 31 H 1.09000 * 109.47317 * 61.75582 * 3 2 1 32 32 H 0.96996 * 119.99863 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47503 * 150.00128 * 13 4 3 34 34 H 1.09001 * 109.47339 * 30.00089 * 13 4 3 35 35 H 0.96697 * 114.00020 * 269.96852 * 17 16 15 36 36 H 1.07998 * 120.06425 * 359.94725 * 19 18 16 37 37 H 1.08009 * 119.60686 * 179.97438 * 20 19 18 38 38 H 1.09005 * 109.47369 * 60.00000 * 25 24 22 39 39 H 1.09006 * 109.46701 * 179.97438 * 25 24 22 40 40 H 1.08995 * 109.47017 * 299.99877 * 25 24 22 41 41 H 1.08006 * 120.31752 * 179.72137 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.7262 1.1744 5 6 3.4773 -0.0414 2.3097 6 1 4.1317 -0.4967 3.0382 7 6 2.9836 1.2382 2.5241 8 7 2.0207 1.7086 1.7600 9 14 3.6858 2.2923 3.8972 10 1 4.8994 2.9957 3.4099 11 1 2.6721 3.2909 4.3224 12 1 4.0439 1.4284 5.0507 13 6 3.2567 -2.1854 1.1343 14 6 1.9661 -2.8104 1.5979 15 7 1.0321 -3.0754 0.6971 16 6 -0.1230 -3.6231 1.0384 17 8 -1.0675 -3.8887 0.1071 18 6 -0.3441 -3.9249 2.4041 19 6 -1.5385 -4.5058 2.8497 20 6 -1.7071 -4.7790 4.1719 21 6 -0.6955 -4.4860 5.1011 22 6 -0.9038 -4.7923 6.5328 23 8 -0.0325 -4.5405 7.3407 24 8 -2.0598 -5.3504 6.9409 25 6 -2.1946 -5.6239 8.3605 26 6 0.4960 -3.9112 4.6876 27 6 0.6847 -3.6227 3.3295 28 7 1.8177 -3.0670 2.8750 29 1 -1.0500 0.0001 0.0002 30 1 3.0089 1.0280 0.0315 31 1 3.0096 -0.4855 -0.9053 32 1 1.6754 2.6026 1.9101 33 1 4.0687 -2.5003 1.7897 34 1 3.4688 -2.5045 0.1139 35 1 -1.6878 -3.1621 -0.0423 36 1 -2.3240 -4.7358 2.1451 37 1 -2.6298 -5.2265 4.5109 38 1 -2.1054 -4.6927 8.9200 39 1 -3.1698 -6.0712 8.5532 40 1 -1.4102 -6.3127 8.6738 41 1 1.2697 -3.6834 5.4060 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491667415.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:13 Heat of formation + Delta-G solvation = 40.850420 kcal Electronic energy + Delta-G solvation = -29086.621717 eV Core-core repulsion = 24935.647685 eV Total energy + Delta-G solvation = -4150.974032 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -41.23972 -40.43448 -37.81492 -37.55139 -36.56687 -35.91814 -32.91540 -32.06966 -31.59550 -31.27532 -29.90820 -28.19229 -26.95896 -26.09770 -25.16023 -23.38198 -22.41719 -21.60172 -21.23553 -18.97170 -18.45748 -17.81981 -17.54017 -17.28147 -16.61235 -16.53802 -16.40505 -15.86567 -15.26603 -14.87441 -14.20540 -14.17361 -13.98616 -13.73041 -13.62228 -13.56647 -13.29850 -12.97078 -12.55652 -12.43655 -12.19033 -11.95029 -11.68149 -11.50332 -11.38086 -11.02454 -10.97900 -10.81713 -10.75600 -10.51523 -10.41571 -10.28452 -10.05854 -9.25597 -9.07842 -8.92678 -8.81454 -8.45725 -8.15108 -7.21939 -5.96119 -3.37558 0.12971 0.62651 1.85569 2.22834 2.42919 3.16476 3.31495 3.37290 3.39187 3.53231 4.06788 4.27911 4.36614 4.40863 4.44511 4.46567 4.61412 4.72660 4.85462 4.91626 4.95027 5.09796 5.20617 5.26263 5.36901 5.48400 5.56626 5.75114 5.79568 5.86550 6.05612 6.11118 6.16980 6.23873 6.38676 6.53009 6.65389 6.69208 7.19381 7.34285 7.37058 7.49935 7.54081 7.62616 8.10077 8.63380 8.94217 9.16482 9.52699 9.98423 11.04424 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010668 B = 0.003940 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.039543 B = 7104.474550 C = 8784.295523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 C -0.076 4.076 3 C 0.264 3.736 4 N -0.560 5.560 5 C -0.249 4.249 6 H 0.085 0.915 7 C 0.003 3.997 8 N -0.886 5.886 9 Si 0.914 3.086 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.276 1.276 13 C 0.199 3.801 14 C 0.336 3.664 15 N -0.507 5.507 16 C 0.388 3.612 17 O -0.475 6.475 18 C -0.168 4.168 19 C -0.071 4.071 20 C -0.104 4.104 21 C -0.094 4.094 22 C 0.510 3.490 23 O -0.499 6.499 24 O -0.354 6.354 25 C 0.036 3.964 26 C -0.024 4.024 27 C 0.168 3.832 28 N -0.494 5.494 29 H 0.184 0.816 30 H 0.108 0.892 31 H 0.041 0.959 32 H 0.258 0.742 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.407 0.593 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.064 0.936 39 H 0.102 0.898 40 H 0.064 0.936 41 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.063 -12.890 2.971 16.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.331 4.331 2 C -0.079 4.079 3 C 0.140 3.860 4 N -0.277 5.277 5 C -0.378 4.378 6 H 0.103 0.897 7 C -0.197 4.197 8 N -0.528 5.528 9 Si 0.743 3.257 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.202 1.202 13 C 0.070 3.930 14 C 0.066 3.934 15 N -0.231 5.231 16 C 0.185 3.815 17 O -0.282 6.282 18 C -0.175 4.175 19 C -0.091 4.091 20 C -0.122 4.122 21 C -0.098 4.098 22 C 0.355 3.645 23 O -0.387 6.387 24 O -0.270 6.270 25 C -0.057 4.057 26 C -0.044 4.044 27 C 0.039 3.961 28 N -0.211 5.211 29 H 0.201 0.799 30 H 0.125 0.875 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.267 0.733 36 H 0.157 0.843 37 H 0.158 0.842 38 H 0.083 0.917 39 H 0.121 0.879 40 H 0.083 0.917 41 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -7.614 -12.689 2.990 15.097 hybrid contribution -1.660 0.801 1.405 2.318 sum -9.274 -11.888 4.395 15.705 Atomic orbital electron populations 1.23939 0.95133 1.07500 1.06562 1.24033 0.95067 0.94096 0.94682 1.18081 0.82969 0.98419 0.86531 1.44711 1.71845 0.98524 1.12600 1.19513 1.21991 0.96624 0.99678 0.89740 1.25178 0.96514 0.99291 0.98726 1.70030 1.25619 1.17515 1.39633 0.86114 0.78122 0.79950 0.81513 1.20950 1.21686 1.20158 1.20236 0.88697 0.84253 0.99803 1.24948 0.97621 0.87038 0.83762 1.67823 1.02049 1.12262 1.40938 1.19600 0.87854 0.89420 0.84630 1.84550 1.41983 1.42949 1.58725 1.19703 0.97761 1.05507 0.94562 1.20715 0.95938 0.96655 0.95814 1.20897 0.98700 1.00198 0.92431 1.18996 0.96289 1.04756 0.89790 1.21203 0.79818 0.74208 0.89294 1.90859 1.43380 1.49282 1.55184 1.86533 1.38253 1.73440 1.28783 1.23299 1.03159 1.01831 0.77452 1.21151 0.96001 0.93184 0.94042 1.18765 0.89613 0.94498 0.93227 1.68748 1.21325 1.13863 1.17151 0.79902 0.87468 0.94065 0.93099 0.89936 0.90842 0.73330 0.84289 0.84228 0.91711 0.87921 0.91741 0.82826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -6.95 19.25 29.55 0.57 -6.38 16 2 C -0.08 -1.80 10.75 -37.12 -0.40 -2.20 16 3 C 0.26 6.05 5.45 -6.83 -0.04 6.01 16 4 N -0.56 -13.13 2.49 -177.96 -0.44 -13.58 16 5 C -0.25 -6.39 9.70 -15.05 -0.15 -6.53 16 6 H 0.08 2.15 7.84 -52.49 -0.41 1.74 16 7 C 0.00 0.08 5.10 -17.43 -0.09 -0.01 16 8 N -0.89 -24.15 9.02 55.49 0.50 -23.64 16 9 Si 0.91 21.18 29.57 -169.99 -5.03 16.16 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 13 C 0.20 4.05 6.09 -5.20 -0.03 4.01 16 14 C 0.34 7.02 6.89 -157.23 -1.08 5.94 16 15 N -0.51 -10.01 9.83 -10.38 -0.10 -10.11 16 16 C 0.39 6.65 7.89 -16.06 -0.13 6.52 16 17 O -0.47 -6.40 12.91 -17.53 -0.23 -6.62 16 18 C -0.17 -2.78 5.76 -106.62 -0.61 -3.40 16 19 C -0.07 -0.90 9.58 -39.67 -0.38 -1.28 16 20 C -0.10 -1.25 9.52 -39.53 -0.38 -1.63 16 21 C -0.09 -1.34 5.87 -104.98 -0.62 -1.96 16 22 C 0.51 7.11 7.90 34.68 0.27 7.39 16 23 O -0.50 -8.18 16.09 -19.23 -0.31 -8.49 16 24 O -0.35 -3.97 9.77 -40.48 -0.40 -4.37 16 25 C 0.04 0.29 10.56 101.05 1.07 1.36 16 26 C -0.02 -0.41 9.58 -38.74 -0.37 -0.78 16 27 C 0.17 3.15 6.61 -84.86 -0.56 2.59 16 28 N -0.49 -10.46 10.32 -8.81 -0.09 -10.55 16 29 H 0.18 3.45 7.80 -54.09 -0.42 3.02 16 30 H 0.11 2.65 6.33 -51.93 -0.33 2.32 16 31 H 0.04 0.83 7.98 -51.93 -0.41 0.41 16 32 H 0.26 6.98 8.31 -40.82 -0.34 6.65 16 33 H 0.08 1.59 8.03 -51.93 -0.42 1.17 16 34 H 0.07 1.33 7.95 -51.93 -0.41 0.91 16 35 H 0.41 3.74 9.06 45.56 0.41 4.16 16 36 H 0.14 1.35 7.70 -52.49 -0.40 0.95 16 37 H 0.14 1.30 7.57 -52.48 -0.40 0.90 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.15 2.61 7.62 -52.48 -0.40 2.21 16 LS Contribution 368.42 15.07 5.55 5.55 Total: -1.00 -32.80 368.42 -7.06 -39.86 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -3.60 Total: 6.15 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: -2.92 Total: 9.65 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: -0.14 Total: -57.88 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.93 Total: -19.48 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.80 -7.06 -39.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491667415.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.709 kcal (2) G-P(sol) polarization free energy of solvation -32.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds