Wall clock time and date at job start Sat Apr 11 2020 06:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47090 * 301.76017 * 3 2 1 5 5 C 1.36941 * 119.99796 * 264.10891 * 4 3 2 6 6 H 1.07993 * 120.00119 * 200.59853 * 5 4 3 7 7 C 1.38819 * 119.99973 * 20.59374 * 5 4 3 8 8 N 1.31619 * 119.99779 * 11.23968 * 7 5 4 9 9 Si 1.86799 * 119.99870 * 191.23690 * 7 5 4 10 10 H 1.48499 * 109.47041 * 84.98372 * 9 7 5 11 11 H 1.48508 * 109.46886 * 204.97945 * 9 7 5 12 12 H 1.48499 * 109.47217 * 324.97926 * 9 7 5 13 13 C 1.46492 * 120.00355 * 84.10597 * 4 3 2 14 14 C 1.50702 * 109.47211 * 270.00115 * 13 4 3 15 15 N 1.32433 * 118.53533 * 90.00166 * 14 13 4 16 16 C 1.32317 * 121.53709 * 180.02562 * 15 14 13 17 17 O 1.35279 * 120.87589 * 180.02562 * 16 15 14 18 18 C 1.41593 * 118.24919 * 359.97438 * 16 15 14 19 19 C 1.40093 * 121.88834 * 180.02562 * 18 16 15 20 20 C 1.36067 * 119.86681 * 179.97438 * 19 18 16 21 21 C 1.40453 * 120.78127 * 359.97438 * 20 19 18 22 22 C 1.47885 * 119.72403 * 179.97438 * 21 20 19 23 23 O 1.21454 * 119.99899 * 180.02562 * 22 21 20 24 24 O 1.34696 * 119.99915 * 0.02562 * 22 21 20 25 25 C 1.45197 * 116.99772 * 179.97438 * 24 22 21 26 26 C 1.38601 * 120.55252 * 0.02562 * 21 20 19 27 27 C 1.40115 * 119.36162 * 0.02562 * 26 21 20 28 28 N 1.31106 * 118.53630 * 270.02146 * 14 13 4 29 29 H 4.40648 * 5.51342 * 179.97438 * 4 1 2 30 30 H 1.08998 * 109.47062 * 181.75708 * 3 2 1 31 31 H 1.09000 * 109.47317 * 61.75582 * 3 2 1 32 32 H 0.96996 * 119.99863 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47503 * 150.00128 * 13 4 3 34 34 H 1.09001 * 109.47339 * 30.00089 * 13 4 3 35 35 H 0.96697 * 114.00020 * 269.96852 * 17 16 15 36 36 H 1.07998 * 120.06425 * 359.94725 * 19 18 16 37 37 H 1.08009 * 119.60686 * 179.97438 * 20 19 18 38 38 H 1.09005 * 109.47369 * 60.00000 * 25 24 22 39 39 H 1.09006 * 109.46701 * 179.97438 * 25 24 22 40 40 H 1.08995 * 109.47017 * 299.99877 * 25 24 22 41 41 H 1.08006 * 120.31752 * 179.72137 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.7262 1.1744 5 6 3.4773 -0.0414 2.3097 6 1 4.1317 -0.4967 3.0382 7 6 2.9836 1.2382 2.5241 8 7 2.0207 1.7086 1.7600 9 14 3.6858 2.2923 3.8972 10 1 4.8994 2.9957 3.4099 11 1 2.6721 3.2909 4.3224 12 1 4.0439 1.4284 5.0507 13 6 3.2567 -2.1854 1.1343 14 6 1.9661 -2.8104 1.5979 15 7 1.0321 -3.0754 0.6971 16 6 -0.1230 -3.6231 1.0384 17 8 -1.0675 -3.8887 0.1071 18 6 -0.3441 -3.9249 2.4041 19 6 -1.5385 -4.5058 2.8497 20 6 -1.7071 -4.7790 4.1719 21 6 -0.6955 -4.4860 5.1011 22 6 -0.9038 -4.7923 6.5328 23 8 -0.0325 -4.5405 7.3407 24 8 -2.0598 -5.3504 6.9409 25 6 -2.1946 -5.6239 8.3605 26 6 0.4960 -3.9112 4.6876 27 6 0.6847 -3.6227 3.3295 28 7 1.8177 -3.0670 2.8750 29 1 -1.0500 0.0001 0.0002 30 1 3.0089 1.0280 0.0315 31 1 3.0096 -0.4855 -0.9053 32 1 1.6754 2.6026 1.9101 33 1 4.0687 -2.5003 1.7897 34 1 3.4688 -2.5045 0.1139 35 1 -1.6878 -3.1621 -0.0423 36 1 -2.3240 -4.7358 2.1451 37 1 -2.6298 -5.2265 4.5109 38 1 -2.1054 -4.6927 8.9200 39 1 -3.1698 -6.0712 8.5532 40 1 -1.4102 -6.3127 8.6738 41 1 1.2697 -3.6834 5.4060 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491667415.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:12 Heat of formation + Delta-G solvation = 17.928066 kcal Electronic energy + Delta-G solvation = -29087.615705 eV Core-core repulsion = 24935.647685 eV Total energy + Delta-G solvation = -4151.968020 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.54617 -41.54291 -38.99491 -38.88521 -37.67744 -37.49784 -34.26156 -33.66754 -33.32376 -32.66637 -31.31616 -29.13260 -28.40395 -27.88904 -26.32737 -24.91259 -23.66450 -23.03227 -22.51142 -20.18436 -19.79171 -19.27985 -18.98762 -18.37670 -18.31234 -17.61426 -17.51740 -17.17425 -16.97973 -16.20731 -15.67525 -15.43199 -15.31853 -15.23088 -15.01926 -14.93405 -14.43014 -14.09954 -14.03862 -13.58315 -13.42218 -13.31858 -13.09675 -12.95991 -12.82406 -12.73941 -12.52901 -12.27245 -12.01076 -11.88843 -11.88336 -11.85072 -11.56223 -10.90711 -10.76045 -10.43996 -10.29108 -10.20955 -9.43017 -9.03343 -7.87114 -5.34787 -1.11714 -0.62148 0.55860 1.09045 1.44402 1.45499 1.46454 1.53559 1.94185 2.28280 2.36495 2.53540 2.68188 2.87995 3.05429 3.21281 3.32497 3.46481 3.51922 3.79126 3.85471 3.90704 4.11089 4.17382 4.24403 4.30271 4.32676 4.55967 4.59502 4.71015 4.79025 4.85044 4.96575 4.98218 5.00377 5.13538 5.25675 5.38145 5.44923 5.62745 5.68692 5.99973 6.24620 6.45168 6.48953 7.04900 7.19458 7.43160 7.71426 8.13854 9.11822 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010668 B = 0.003940 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.039543 B = 7104.474550 C = 8784.295523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 C -0.106 4.106 3 C 0.267 3.733 4 N -0.576 5.576 5 C -0.257 4.257 6 H 0.075 0.925 7 C -0.041 4.041 8 N -0.913 5.913 9 Si 0.964 3.036 10 H -0.276 1.276 11 H -0.300 1.300 12 H -0.280 1.280 13 C 0.201 3.799 14 C 0.331 3.669 15 N -0.532 5.532 16 C 0.401 3.599 17 O -0.464 6.464 18 C -0.173 4.173 19 C -0.056 4.056 20 C -0.082 4.082 21 C -0.083 4.083 22 C 0.514 3.486 23 O -0.530 6.530 24 O -0.344 6.344 25 C 0.027 3.973 26 C -0.050 4.050 27 C 0.138 3.862 28 N -0.526 5.526 29 H 0.214 0.786 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.247 0.753 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.429 0.571 36 H 0.183 0.817 37 H 0.182 0.818 38 H 0.061 0.939 39 H 0.142 0.858 40 H 0.064 0.936 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.622 -15.449 3.167 20.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.328 4.328 2 C -0.108 4.108 3 C 0.143 3.857 4 N -0.294 5.294 5 C -0.387 4.387 6 H 0.093 0.907 7 C -0.237 4.237 8 N -0.557 5.557 9 Si 0.793 3.207 10 H -0.202 1.202 11 H -0.227 1.227 12 H -0.206 1.206 13 C 0.072 3.928 14 C 0.060 3.940 15 N -0.257 5.257 16 C 0.198 3.802 17 O -0.275 6.275 18 C -0.180 4.180 19 C -0.076 4.076 20 C -0.100 4.100 21 C -0.088 4.088 22 C 0.359 3.641 23 O -0.420 6.420 24 O -0.260 6.260 25 C -0.065 4.065 26 C -0.069 4.069 27 C 0.011 3.989 28 N -0.243 5.243 29 H 0.231 0.769 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.100 0.900 34 H 0.111 0.889 35 H 0.293 0.707 36 H 0.200 0.800 37 H 0.200 0.800 38 H 0.080 0.920 39 H 0.160 0.840 40 H 0.083 0.917 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.227 -15.307 3.210 19.253 hybrid contribution -0.816 1.185 1.447 2.040 sum -12.043 -14.123 4.657 19.135 Atomic orbital electron populations 1.24671 0.96074 1.06492 1.05602 1.24385 0.95818 0.95031 0.95601 1.17949 0.83143 0.97345 0.87263 1.44479 1.73194 0.99697 1.12044 1.19534 1.22170 0.97198 0.99769 0.90685 1.25665 0.97256 1.00260 1.00557 1.70189 1.27279 1.17030 1.41249 0.85338 0.77409 0.78424 0.79532 1.20224 1.22717 1.20558 1.20200 0.88862 0.82841 1.00900 1.24742 0.97373 0.87922 0.83936 1.67820 1.03122 1.14033 1.40754 1.19811 0.87792 0.87158 0.85430 1.84527 1.41486 1.43842 1.57597 1.19946 0.98548 1.05483 0.94010 1.21182 0.95033 0.94555 0.96837 1.21368 0.99009 0.98001 0.91601 1.19198 0.95741 1.03013 0.90813 1.21150 0.80221 0.73836 0.88847 1.90857 1.44653 1.50602 1.55930 1.86514 1.36267 1.72388 1.30819 1.23682 1.05410 1.02029 0.75414 1.21054 0.97214 0.95333 0.93289 1.19035 0.89979 0.95460 0.94395 1.68664 1.23335 1.14778 1.17511 0.76948 0.90092 0.91791 0.94320 0.89969 0.88907 0.70703 0.79999 0.80030 0.92036 0.83988 0.91679 0.84554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -13.54 19.25 74.32 1.43 -12.11 16 2 C -0.11 -5.04 10.75 31.12 0.33 -4.71 16 3 C 0.27 12.60 5.45 84.57 0.46 13.06 16 4 N -0.58 -27.91 2.49 -716.93 -1.79 -29.70 16 5 C -0.26 -13.77 9.70 84.03 0.81 -12.95 16 6 H 0.08 4.03 7.84 -2.91 -0.02 4.01 16 7 C -0.04 -2.24 5.10 84.86 0.43 -1.81 16 8 N -0.91 -51.69 9.02 21.65 0.20 -51.49 16 9 Si 0.96 45.40 29.57 68.60 2.03 47.43 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 12 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 13 C 0.20 8.37 6.09 85.64 0.52 8.89 16 14 C 0.33 14.03 6.89 138.76 0.96 14.99 16 15 N -0.53 -20.57 9.83 -299.81 -2.95 -23.52 16 16 C 0.40 12.75 7.89 85.45 0.67 13.42 16 17 O -0.46 -10.62 12.91 -85.64 -1.11 -11.73 16 18 C -0.17 -5.31 5.76 -21.16 -0.12 -5.43 16 19 C -0.06 -1.15 9.58 22.21 0.21 -0.94 16 20 C -0.08 -1.58 9.52 22.30 0.21 -1.36 16 21 C -0.08 -2.20 5.87 -20.10 -0.12 -2.32 16 22 C 0.51 13.28 7.90 70.38 0.56 13.84 16 23 O -0.53 -17.11 16.09 19.98 0.32 -16.79 16 24 O -0.34 -6.46 9.77 -56.06 -0.55 -7.01 16 25 C 0.03 0.35 10.56 113.37 1.20 1.55 16 26 C -0.05 -1.67 9.58 22.81 0.22 -1.45 16 27 C 0.14 5.16 6.61 40.09 0.26 5.42 16 28 N -0.53 -22.89 10.32 -181.80 -1.88 -24.76 16 29 H 0.21 7.52 7.80 -4.42 -0.03 7.49 16 30 H 0.08 4.21 6.33 -2.39 -0.02 4.20 16 31 H 0.06 2.61 7.98 -2.39 -0.02 2.59 16 32 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 33 H 0.08 3.32 8.03 -2.39 -0.02 3.30 16 34 H 0.09 3.40 7.95 -2.39 -0.02 3.38 16 35 H 0.43 5.91 9.06 -74.06 -0.67 5.24 16 36 H 0.18 2.24 7.70 -2.91 -0.02 2.22 16 37 H 0.18 2.10 7.57 -2.91 -0.02 2.08 16 38 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.14 0.71 8.14 -2.38 -0.02 0.69 16 40 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.14 4.94 7.62 -2.91 -0.02 4.92 16 Total: -1.00 -75.25 368.42 2.76 -72.49 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 0.42 Total: 16.98 kcal Atomic # 6 Polarization: 20.05 SS G_CDS: 8.05 Total: 28.10 kcal Atomic # 7 Polarization: -123.06 SS G_CDS: -6.41 Total: -129.48 kcal Atomic # 8 Polarization: -34.19 SS G_CDS: -1.33 Total: -35.53 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -75.25 2.76 -72.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491667415.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.421 kcal (2) G-P(sol) polarization free energy of solvation -75.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds