Wall clock time and date at job start Sat Apr 11 2020 06:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35767 * 117.00062 * 2 1 4 4 N 1.32149 * 120.19123 * 359.97438 * 3 2 1 5 5 N 1.28308 * 122.18894 * 180.02562 * 4 3 2 6 6 C 1.31900 * 122.44867 * 0.02562 * 5 4 3 7 7 C 1.38526 * 120.03963 * 359.73840 * 6 5 4 8 8 C 1.39363 * 117.93344 * 0.49724 * 7 6 5 9 9 N 1.39639 * 121.11439 * 179.78333 * 8 7 6 10 10 C 1.34780 * 119.99896 * 328.80782 * 9 8 7 11 11 O 1.21731 * 120.00159 * 5.01656 * 10 9 8 12 12 C 1.46205 * 119.99563 * 185.02364 * 10 9 8 13 13 C 1.35052 * 119.99882 * 173.22389 * 12 10 9 14 14 C 1.46955 * 119.99683 * 349.05153 * 13 12 10 15 15 C 1.40028 * 120.10077 * 316.11608 * 14 13 12 16 16 C 1.37594 * 119.89188 * 179.76739 * 15 14 13 17 17 C 1.39179 * 120.10533 * 0.51617 * 16 15 14 18 18 O 1.35568 * 119.89688 * 179.76489 * 17 16 15 19 19 C 1.34783 * 116.99520 * 186.55966 * 18 17 16 20 20 H 1.07997 * 120.00696 * 5.49469 * 19 18 17 21 21 C 1.38722 * 119.99626 * 185.49608 * 19 18 17 22 22 N 1.31508 * 119.99873 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00235 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.47061 * 90.00021 * 23 21 19 25 25 H 1.48500 * 109.47062 * 210.00003 * 23 21 19 26 26 H 1.48500 * 109.47029 * 330.00058 * 23 21 19 27 27 C 1.39177 * 120.20254 * 359.73132 * 17 16 15 28 28 C 1.37593 * 120.10223 * 0.02562 * 27 17 16 29 29 H 1.08997 * 109.47204 * 60.00237 * 1 2 3 30 30 H 1.09002 * 109.46993 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47282 * 300.00081 * 1 2 3 32 32 H 1.07996 * 119.97634 * 179.97438 * 6 5 4 33 33 H 1.08007 * 121.03433 * 180.29020 * 7 6 5 34 34 H 0.97000 * 119.99607 * 148.80269 * 9 8 7 35 35 H 1.08000 * 119.99995 * 352.93704 * 12 10 9 36 36 H 1.07997 * 119.99999 * 169.05532 * 13 12 10 37 37 H 1.08001 * 120.05180 * 0.02562 * 15 14 13 38 38 H 1.08004 * 119.94440 * 180.22921 * 16 15 14 39 39 H 0.97001 * 120.00097 * 179.97438 * 22 21 19 40 40 H 1.08001 * 119.94758 * 179.97438 * 27 17 16 41 41 H 1.07999 * 120.05154 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 7 1.3294 2.3204 -0.0005 5 7 1.8717 3.4832 -0.0010 6 6 3.1796 3.6541 -0.0016 7 6 4.0226 2.5549 0.0039 8 6 3.4429 1.2876 -0.0009 9 7 4.2299 0.1341 -0.0004 10 6 5.4367 0.1415 -0.6005 11 8 5.8803 1.1765 -1.0628 12 6 6.2130 -1.0938 -0.6963 13 6 7.3563 -1.1188 -1.4147 14 6 7.6978 0.0098 -2.2916 15 6 6.7178 0.5851 -3.1098 16 6 7.0412 1.6448 -3.9257 17 6 8.3425 2.1381 -3.9465 18 8 8.6575 3.1793 -4.7555 19 6 9.9587 3.5224 -4.8325 20 1 10.7060 2.9216 -4.3355 21 6 10.3381 4.6473 -5.5501 22 7 11.6076 4.9824 -5.6248 23 14 9.0456 5.6870 -6.4091 24 1 8.5657 6.7445 -5.4836 25 1 9.6391 6.3172 -7.6157 26 1 7.9046 4.8258 -6.8110 27 6 9.3210 1.5662 -3.1388 28 6 9.0058 0.5094 -2.3161 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 3.5934 4.6517 -0.0024 33 1 5.0958 2.6763 0.0082 34 1 3.9081 -0.6724 0.4319 35 1 5.8745 -1.9850 -0.1887 36 1 8.0194 -1.9683 -1.3448 37 1 5.7087 0.2003 -3.0974 38 1 6.2851 2.0915 -4.5544 39 1 11.8729 5.7687 -6.1268 40 1 10.3296 1.9520 -3.1586 41 1 9.7657 0.0665 -1.6894 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493249141.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:39 Heat of formation + Delta-G solvation = 4.798410 kcal Electronic energy + Delta-G solvation = -28382.492825 eV Core-core repulsion = 24229.955461 eV Total energy + Delta-G solvation = -4152.537364 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.60317 -41.23921 -40.58946 -39.46708 -38.45153 -36.50941 -34.70790 -34.21717 -33.27406 -32.14835 -31.87000 -29.79678 -28.57863 -27.41264 -26.09379 -24.96376 -24.05731 -23.57931 -22.47387 -20.94798 -19.86193 -19.63586 -19.34927 -18.87147 -18.69935 -17.88675 -17.34026 -16.66632 -16.40540 -16.29834 -15.86549 -15.70659 -15.61468 -15.48190 -15.28482 -15.06800 -14.93163 -14.73583 -14.42127 -14.26417 -14.08936 -13.80920 -13.18118 -12.95039 -12.79874 -12.70065 -12.51580 -12.47082 -12.30875 -12.10570 -11.97617 -11.39604 -11.33353 -10.96501 -10.79846 -10.49617 -10.48223 -9.76651 -9.49030 -8.65221 -8.52910 -6.23350 -0.49503 -0.13617 0.00049 0.66217 1.02705 1.28741 1.33719 1.49126 1.74317 1.81443 2.19687 2.25626 2.51465 2.78402 3.01639 3.08851 3.15893 3.33445 3.57454 3.91254 3.95736 4.04149 4.10549 4.14102 4.31061 4.39754 4.44092 4.51431 4.56259 4.61140 4.74663 4.76517 4.91197 5.04768 5.14120 5.18121 5.23768 5.34709 5.43149 5.64695 5.75346 5.79064 5.88297 5.89312 6.23544 6.31408 6.81670 7.05884 7.55093 7.57598 8.58580 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013110 B = 0.002917 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.249024 B = 9598.152123 C =11121.473524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.303 6.303 3 C 0.239 3.761 4 N -0.304 5.304 5 N -0.253 5.253 6 C 0.038 3.962 7 C -0.112 4.112 8 C 0.141 3.859 9 N -0.642 5.642 10 C 0.534 3.466 11 O -0.533 6.533 12 C -0.230 4.230 13 C 0.020 3.980 14 C -0.156 4.156 15 C 0.008 3.992 16 C -0.208 4.208 17 C 0.136 3.864 18 O -0.244 6.244 19 C -0.398 4.398 20 H 0.084 0.916 21 C 0.013 3.987 22 N -0.919 5.919 23 Si 0.966 3.034 24 H -0.267 1.267 25 H -0.264 1.264 26 H -0.266 1.266 27 C -0.250 4.250 28 C -0.046 4.046 29 H 0.055 0.945 30 H 0.135 0.865 31 H 0.062 0.938 32 H 0.201 0.799 33 H 0.169 0.831 34 H 0.433 0.567 35 H 0.182 0.818 36 H 0.174 0.826 37 H 0.122 0.878 38 H 0.112 0.888 39 H 0.286 0.714 40 H 0.109 0.891 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.828 -16.523 15.420 29.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.208 6.208 3 C 0.049 3.951 4 N -0.160 5.160 5 N -0.096 5.096 6 C -0.129 4.129 7 C -0.143 4.143 8 C 0.032 3.968 9 N -0.289 5.289 10 C 0.327 3.673 11 O -0.410 6.410 12 C -0.250 4.250 13 C 0.001 3.999 14 C -0.156 4.156 15 C -0.010 4.010 16 C -0.228 4.228 17 C 0.087 3.913 18 O -0.151 6.151 19 C -0.475 4.475 20 H 0.101 0.899 21 C -0.186 4.186 22 N -0.559 5.559 23 Si 0.789 3.211 24 H -0.192 1.192 25 H -0.188 1.188 26 H -0.191 1.191 27 C -0.270 4.270 28 C -0.064 4.064 29 H 0.074 0.926 30 H 0.153 0.847 31 H 0.081 0.919 32 H 0.218 0.782 33 H 0.186 0.814 34 H 0.274 0.726 35 H 0.199 0.801 36 H 0.191 0.809 37 H 0.140 0.860 38 H 0.130 0.870 39 H 0.095 0.905 40 H 0.127 0.873 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -19.892 -15.227 14.854 29.124 hybrid contribution 1.159 0.205 -0.333 1.223 sum -18.733 -15.022 14.521 28.062 Atomic orbital electron populations 1.23241 0.74872 1.05568 1.02569 1.86182 1.24929 1.21897 1.87764 1.21430 0.89047 0.88320 0.96302 1.72836 1.32122 0.94305 1.16709 1.72599 1.12675 1.13457 1.10822 1.24518 0.89888 1.02025 0.96494 1.22686 1.04005 0.90290 0.97326 1.18053 0.87711 0.89569 1.01505 1.43264 1.17332 1.12631 1.55653 1.19376 0.80263 0.91212 0.76470 1.90992 1.68552 1.34969 1.46470 1.22894 0.97509 0.96976 1.07605 1.22657 0.94043 0.95160 0.88016 1.18905 0.93142 1.01288 1.02301 1.20699 0.97232 0.91849 0.91212 1.20197 0.93560 1.02167 1.06846 1.19755 0.94547 0.87566 0.89480 1.83472 1.27882 1.45009 1.58768 1.20737 0.80135 1.11958 1.34621 0.89862 1.25244 0.98556 0.97296 0.97489 1.69695 1.16427 1.27663 1.42153 0.85282 0.78762 0.78522 0.78548 1.19206 1.18829 1.19072 1.21127 0.99633 1.02876 1.03316 1.21165 0.95989 0.93794 0.95439 0.92645 0.84734 0.91928 0.78246 0.81402 0.72636 0.80110 0.80850 0.86034 0.86983 0.90476 0.87277 0.83639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.40 113.37 1.18 1.55 16 2 O -0.30 -5.14 10.10 -90.94 -0.92 -6.06 16 3 C 0.24 5.28 7.60 85.06 0.65 5.92 16 4 N -0.30 -7.81 10.40 -169.88 -1.77 -9.57 16 5 N -0.25 -6.71 11.49 -57.33 -0.66 -7.37 16 6 C 0.04 0.86 11.30 84.75 0.96 1.82 16 7 C -0.11 -2.67 8.89 22.61 0.20 -2.47 16 8 C 0.14 3.07 6.44 38.59 0.25 3.31 16 9 N -0.64 -10.64 5.24 -306.45 -1.61 -12.24 16 10 C 0.53 10.98 6.67 86.31 0.58 11.56 16 11 O -0.53 -15.83 9.45 -4.45 -0.04 -15.87 16 12 C -0.23 -3.16 9.91 23.61 0.23 -2.93 16 13 C 0.02 0.35 9.80 23.82 0.23 0.59 16 14 C -0.16 -4.56 4.54 -20.12 -0.09 -4.65 16 15 C 0.01 0.28 6.59 22.55 0.15 0.43 16 16 C -0.21 -8.72 9.97 22.34 0.22 -8.50 16 17 C 0.14 6.65 6.65 22.72 0.15 6.80 16 18 O -0.24 -13.76 8.57 -20.27 -0.17 -13.94 16 19 C -0.40 -23.89 9.89 67.94 0.67 -23.22 16 20 H 0.08 5.19 5.53 -2.91 -0.02 5.17 16 21 C 0.01 0.77 5.49 84.86 0.47 1.23 16 22 N -0.92 -55.26 13.96 21.62 0.30 -54.96 16 23 Si 0.97 46.55 28.62 68.60 1.96 48.51 16 24 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 25 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 26 H -0.27 -12.95 7.11 99.48 0.71 -12.25 16 27 C -0.25 -11.16 9.10 22.34 0.20 -10.95 16 28 C -0.05 -1.55 9.78 22.55 0.22 -1.33 16 29 H 0.05 0.75 8.11 -2.39 -0.02 0.73 16 30 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.75 8.11 -2.39 -0.02 0.73 16 32 H 0.20 3.46 8.06 -2.91 -0.02 3.44 16 33 H 0.17 4.35 6.09 -2.91 -0.02 4.34 16 34 H 0.43 4.16 8.54 -92.71 -0.79 3.37 16 35 H 0.18 0.76 8.06 -2.91 -0.02 0.74 16 36 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 37 H 0.12 3.59 7.03 -2.91 -0.02 3.57 16 38 H 0.11 4.59 8.06 -2.91 -0.02 4.56 16 39 H 0.29 15.72 8.31 -92.71 -0.77 14.95 16 40 H 0.11 5.31 5.71 -2.91 -0.02 5.30 16 41 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -78.12 358.04 3.68 -74.44 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 0.31 Total: 17.90 kcal Atomic # 6 Polarization: -27.10 SS G_CDS: 6.27 Total: -20.83 kcal Atomic # 7 Polarization: -80.42 SS G_CDS: -3.73 Total: -84.15 kcal Atomic # 8 Polarization: -34.74 SS G_CDS: -1.13 Total: -35.87 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 1.96 Total: 48.51 kcal Total: -78.12 3.68 -74.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493249141.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.242 kcal (2) G-P(sol) polarization free energy of solvation -78.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds