Wall clock time and date at job start Sat Apr 11 2020 06:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35994 * 117.00267 * 2 1 4 4 C 1.38561 * 120.06226 * 359.97438 * 3 2 1 5 5 C 1.38345 * 119.98564 * 180.02562 * 4 3 2 6 6 Cl 1.73599 * 119.93973 * 180.02562 * 5 4 3 7 7 C 1.38358 * 120.11797 * 359.97438 * 5 4 3 8 8 C 1.50701 * 119.93303 * 180.02562 * 7 5 4 9 9 N 1.46895 * 109.47321 * 75.65470 * 8 7 5 10 10 C 1.47441 * 110.99790 * 75.38548 * 9 8 7 11 11 C 1.54316 * 107.23725 * 123.25681 * 10 9 8 12 12 C 1.55145 * 103.01906 * 22.28109 * 11 10 9 13 13 O 1.42896 * 110.98722 * 82.47923 * 12 11 10 14 14 C 1.50697 * 110.98956 * 206.25815 * 12 11 10 15 15 H 1.08006 * 120.00055 * 115.94729 * 14 12 11 16 16 C 1.37879 * 120.00030 * 295.93923 * 14 12 11 17 17 N 1.31508 * 120.00177 * 4.64487 * 16 14 12 18 18 Si 1.86797 * 119.99967 * 184.63933 * 16 14 12 19 19 H 1.48496 * 109.47166 * 94.94625 * 18 16 14 20 20 H 1.48501 * 109.47352 * 214.94757 * 18 16 14 21 21 H 1.48508 * 109.47170 * 334.94623 * 18 16 14 22 22 C 1.47851 * 111.00065 * 196.22429 * 9 8 7 23 23 C 1.38241 * 120.13520 * 0.02562 * 7 5 4 24 24 C 1.38558 * 120.01127 * 359.72534 * 23 7 5 25 25 O 1.36017 * 120.06308 * 180.27702 * 24 23 7 26 26 C 1.42901 * 116.99822 * 0.27314 * 25 24 23 27 27 H 1.09000 * 109.46841 * 60.00464 * 1 2 3 28 28 H 1.09004 * 109.46959 * 300.00527 * 1 2 3 29 29 H 1.09002 * 109.47248 * 180.02562 * 1 2 3 30 30 H 1.07995 * 120.00911 * 0.02562 * 4 3 2 31 31 H 1.09004 * 109.47124 * 195.66330 * 8 7 5 32 32 H 1.09006 * 109.46742 * 315.65806 * 8 7 5 33 33 H 1.08999 * 109.88694 * 242.66141 * 10 9 8 34 34 H 1.09008 * 109.89167 * 3.84795 * 10 9 8 35 35 H 1.08999 * 110.71100 * 140.66621 * 11 10 9 36 36 H 1.09005 * 110.70603 * 263.72601 * 11 10 9 37 37 H 0.96696 * 114.00235 * 54.24672 * 13 12 11 38 38 H 0.96994 * 120.00599 * 179.97438 * 17 16 14 39 39 H 1.09004 * 110.37262 * 332.46730 * 22 9 8 40 40 H 1.08990 * 110.37126 * 94.81113 * 22 9 8 41 41 H 1.07993 * 119.99463 * 180.02562 * 23 7 5 42 42 H 1.08999 * 109.46881 * 59.99894 * 26 25 24 43 43 H 1.09001 * 109.47171 * 180.02562 * 26 25 24 44 44 H 1.08997 * 109.47376 * 300.00508 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2931 2.3746 -0.0005 5 6 1.9229 3.6064 -0.0011 6 17 0.9779 5.0626 -0.0011 7 6 3.3045 3.6797 -0.0005 8 6 3.9862 5.0238 -0.0005 9 7 3.9012 5.6160 1.3410 10 6 4.8476 4.9663 2.2663 11 6 5.7571 6.0724 2.8413 12 6 4.9104 7.3577 2.6462 13 8 3.9619 7.5113 3.7038 14 6 5.7932 8.5740 2.5356 15 1 5.8151 9.1439 1.6184 16 6 6.5728 8.9595 3.6055 17 7 6.6163 8.2158 4.6893 18 14 7.5675 10.5381 3.5155 19 1 6.7950 11.6458 4.1330 20 1 8.8473 10.3592 4.2472 21 1 7.8511 10.8642 2.0947 22 6 4.2003 7.0634 1.3013 23 6 4.0610 2.5226 0.0000 24 6 3.4359 1.2861 0.0058 25 8 4.1792 0.1469 0.0120 26 6 5.6000 0.2994 0.0183 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 0.2146 2.3195 -0.0005 31 1 5.0332 4.9001 -0.2776 32 1 3.4953 5.6801 -0.7192 33 1 4.3012 4.4786 3.0736 34 1 5.4493 4.2341 1.7277 35 1 5.9546 5.8979 3.8990 36 1 6.6904 6.1337 2.2814 37 1 4.3523 7.4911 4.5883 38 1 7.1650 8.4868 5.4418 39 1 4.8615 7.2913 0.4652 40 1 3.2782 7.6394 1.2250 41 1 5.1392 2.5825 0.0008 42 1 5.9022 0.8512 0.9084 43 1 6.0709 -0.6836 0.0224 44 1 5.9106 0.8470 -0.8715 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602698708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:15 Heat of formation + Delta-G solvation = -112.252344 kcal Electronic energy + Delta-G solvation = -28105.526162 eV Core-core repulsion = 24049.020590 eV Total energy + Delta-G solvation = -4056.505572 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.123 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.70310 -40.14867 -39.45319 -38.47782 -37.03262 -36.26757 -34.15815 -32.87516 -31.24437 -30.57541 -29.83584 -28.42703 -28.08729 -26.79493 -25.42327 -23.33637 -22.71475 -21.47142 -21.37328 -19.47751 -18.95964 -18.12499 -18.06942 -17.12133 -16.90285 -16.80929 -16.31602 -16.16001 -16.10822 -15.91381 -15.62479 -15.43451 -14.76143 -14.47907 -14.29351 -13.93933 -13.74012 -13.65742 -13.27593 -13.14501 -13.01036 -12.91189 -12.80139 -12.73055 -12.51753 -12.31609 -12.26147 -12.20602 -12.10863 -12.06340 -11.66867 -11.59188 -11.38422 -11.06677 -10.58263 -10.05092 -9.77051 -9.11274 -8.78434 -8.19052 -6.33255 0.09579 0.17771 1.26578 1.39929 1.43247 1.51622 2.28007 2.29149 2.38685 2.45176 3.05485 3.26622 3.64979 3.70287 3.96321 4.05092 4.06455 4.10803 4.25510 4.33168 4.39381 4.40514 4.41725 4.45320 4.49402 4.55723 4.60177 4.72771 4.75688 4.79527 4.83887 4.92524 4.95856 5.12089 5.26607 5.33166 5.41474 5.48765 5.58174 5.82881 6.00133 6.02689 6.25963 6.32028 6.50191 6.71702 7.37991 7.47431 8.86227 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017585 B = 0.003037 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.863577 B = 9217.320175 C =10148.617306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.321 6.321 3 C 0.099 3.901 4 C -0.165 4.165 5 C -0.021 4.021 6 Cl -0.060 7.060 7 C -0.067 4.067 8 C 0.090 3.910 9 N -0.516 5.516 10 C 0.057 3.943 11 C -0.134 4.134 12 C 0.235 3.765 13 O -0.586 6.586 14 C -0.558 4.558 15 H 0.053 0.947 16 C 0.032 3.968 17 N -0.909 5.909 18 Si 0.956 3.044 19 H -0.280 1.280 20 H -0.281 1.281 21 H -0.270 1.270 22 C 0.072 3.928 23 C -0.152 4.152 24 C 0.093 3.907 25 O -0.322 6.322 26 C 0.016 3.984 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.122 0.878 30 H 0.163 0.837 31 H 0.055 0.945 32 H 0.086 0.914 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.047 0.953 37 H 0.369 0.631 38 H 0.267 0.733 39 H 0.052 0.948 40 H 0.060 0.940 41 H 0.157 0.843 42 H 0.059 0.941 43 H 0.122 0.878 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.943 -16.914 -11.205 21.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.235 6.235 3 C 0.053 3.947 4 C -0.184 4.184 5 C -0.048 4.048 6 Cl -0.031 7.031 7 C -0.069 4.069 8 C -0.038 4.038 9 N -0.240 5.240 10 C -0.070 4.070 11 C -0.173 4.173 12 C 0.195 3.805 13 O -0.393 6.393 14 C -0.596 4.596 15 H 0.072 0.928 16 C -0.169 4.169 17 N -0.548 5.548 18 Si 0.782 3.218 19 H -0.206 1.206 20 H -0.206 1.206 21 H -0.195 1.195 22 C -0.056 4.056 23 C -0.172 4.172 24 C 0.047 3.953 25 O -0.236 6.236 26 C -0.078 4.078 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.140 0.860 30 H 0.180 0.820 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.216 0.784 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.174 0.826 42 H 0.078 0.922 43 H 0.140 0.860 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.855 -17.242 -11.383 22.103 hybrid contribution 1.696 1.538 0.546 2.354 sum -6.158 -15.704 -10.837 20.050 Atomic orbital electron populations 1.23406 0.76389 1.05825 1.02319 1.86157 1.23336 1.25092 1.88928 1.18155 0.89234 0.85327 1.01976 1.21004 1.01378 0.89099 1.06936 1.20445 0.91352 0.87713 1.05316 1.98372 1.71817 1.36188 1.96726 1.19402 0.91649 0.95201 1.00631 1.21175 0.98786 0.92259 0.91538 1.63498 1.50430 1.02593 1.07512 1.22718 0.92561 0.96023 0.95746 1.23073 0.97604 0.96340 1.00281 1.19766 0.84971 0.91494 0.84244 1.86169 1.38590 1.96411 1.18095 1.21810 1.24942 1.12907 0.99969 0.92831 1.25647 0.96796 0.99407 0.95067 1.69848 1.41017 1.38307 1.05627 0.85583 0.77963 0.80026 0.78216 1.20587 1.20639 1.19465 1.22790 0.98399 0.87774 0.96598 1.21029 1.01125 0.89464 1.05539 1.18380 0.88667 0.86407 1.01863 1.86143 1.20579 1.27945 1.88883 1.23378 0.76671 1.05585 1.02205 0.91420 0.91932 0.85958 0.81993 0.92723 0.89581 0.92634 0.92149 0.92641 0.93451 0.78362 0.92405 0.92980 0.92165 0.82592 0.92211 0.86015 0.91460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.81 113.37 1.11 1.31 16 2 O -0.32 -7.40 10.28 -79.59 -0.82 -8.22 16 3 C 0.10 2.49 6.70 22.57 0.15 2.64 16 4 C -0.16 -3.92 8.82 22.37 0.20 -3.72 16 5 C -0.02 -0.57 6.31 22.32 0.14 -0.43 16 6 Cl -0.06 -1.71 27.54 -2.72 -0.07 -1.78 16 7 C -0.07 -1.86 5.05 -19.83 -0.10 -1.96 16 8 C 0.09 2.70 4.05 85.56 0.35 3.05 16 9 N -0.52 -19.17 5.03 -890.09 -4.48 -23.65 16 10 C 0.06 2.16 6.51 86.65 0.56 2.72 16 11 C -0.13 -6.06 5.38 31.78 0.17 -5.89 16 12 C 0.24 11.66 0.86 -10.15 -0.01 11.65 16 13 O -0.59 -31.23 13.13 -148.98 -1.96 -33.19 16 14 C -0.56 -29.95 8.25 25.60 0.21 -29.74 16 15 H 0.05 2.86 7.79 -2.91 -0.02 2.84 16 16 C 0.03 1.67 5.32 84.66 0.45 2.12 16 17 N -0.91 -48.72 10.86 21.45 0.23 -48.49 16 18 Si 0.96 42.28 29.54 68.60 2.03 44.31 16 19 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 20 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 21 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 22 C 0.07 3.07 5.81 86.77 0.50 3.57 16 23 C -0.15 -3.74 8.24 22.35 0.18 -3.56 16 24 C 0.09 2.36 6.70 22.56 0.15 2.52 16 25 O -0.32 -7.69 10.28 -79.86 -0.82 -8.51 16 26 C 0.02 0.25 9.81 113.37 1.11 1.36 16 27 H 0.07 0.75 7.66 -2.39 -0.02 0.74 16 28 H 0.06 0.78 7.66 -2.38 -0.02 0.76 16 29 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.16 3.04 6.30 -2.91 -0.02 3.02 16 31 H 0.05 1.52 7.60 -2.39 -0.02 1.50 16 32 H 0.09 2.53 7.40 -2.38 -0.02 2.51 16 33 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.06 1.95 6.96 -2.38 -0.02 1.93 16 35 H 0.05 2.71 7.51 -2.39 -0.02 2.70 16 36 H 0.05 2.17 8.04 -2.38 -0.02 2.16 16 37 H 0.37 19.85 7.63 -74.06 -0.57 19.28 16 38 H 0.27 13.65 8.31 -92.71 -0.77 12.88 16 39 H 0.05 2.13 7.70 -2.38 -0.02 2.11 16 40 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 41 H 0.16 3.20 6.24 -2.91 -0.02 3.18 16 42 H 0.06 0.90 7.67 -2.39 -0.02 0.89 16 43 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.07 0.88 7.65 -2.39 -0.02 0.86 16 Total: -1.00 -63.11 370.32 -0.24 -63.35 By element: Atomic # 1 Polarization: 30.07 SS G_CDS: 0.47 Total: 30.53 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: 5.19 Total: -14.35 kcal Atomic # 7 Polarization: -67.89 SS G_CDS: -4.25 Total: -72.14 kcal Atomic # 8 Polarization: -46.32 SS G_CDS: -3.60 Total: -49.92 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Atomic # 17 Polarization: -1.71 SS G_CDS: -0.07 Total: -1.78 kcal Total: -63.11 -0.24 -63.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602698708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.906 kcal (2) G-P(sol) polarization free energy of solvation -63.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds