Wall clock time and date at job start Sat Apr 11 2020 06:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99671 * 2 1 4 4 C 1.50705 * 109.46822 * 179.97438 * 3 2 1 5 5 N 1.29436 * 124.80091 * 89.97650 * 4 3 2 6 6 C 1.30943 * 117.35716 * 179.72686 * 5 4 3 7 7 C 1.35663 * 114.19340 * 0.52644 * 6 5 4 8 8 C 1.46681 * 126.12603 * 179.78587 * 7 6 5 9 9 O 1.21679 * 120.00448 * 359.71051 * 8 7 6 10 10 N 1.34783 * 119.99613 * 179.71727 * 8 7 6 11 11 C 1.46501 * 119.99965 * 179.97438 * 10 8 7 12 12 C 1.52994 * 109.47195 * 179.97438 * 11 10 8 13 13 H 1.08997 * 109.51228 * 304.90238 * 12 11 10 14 14 C 1.52874 * 109.62721 * 184.90811 * 12 11 10 15 15 N 1.47146 * 108.61038 * 187.90024 * 14 12 11 16 16 C 1.36938 * 120.98166 * 230.49961 * 15 14 12 17 17 H 1.08004 * 120.00362 * 26.46603 * 16 15 14 18 18 C 1.38811 * 120.00369 * 206.46273 * 16 15 14 19 19 N 1.31624 * 119.99894 * 16.40694 * 18 16 15 20 20 Si 1.86793 * 120.00437 * 196.13282 * 18 16 15 21 21 H 1.48503 * 109.47164 * 59.99815 * 20 18 16 22 22 H 1.48503 * 109.47446 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47137 * 299.99970 * 20 18 16 24 24 C 1.47152 * 118.03553 * 50.22601 * 15 14 12 25 25 C 1.53291 * 108.38463 * 309.71610 * 24 15 14 26 26 O 1.42958 * 109.22268 * 52.30270 * 25 24 15 27 27 S 1.70947 * 124.80653 * 269.99927 * 4 3 2 28 28 H 1.08990 * 109.47155 * 299.99767 * 1 2 3 29 29 H 1.08996 * 109.46976 * 60.00234 * 1 2 3 30 30 H 1.09007 * 109.47095 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47325 * 60.00239 * 3 2 1 32 32 H 1.08995 * 109.46961 * 299.99822 * 3 2 1 33 33 H 1.08006 * 122.90049 * 180.34440 * 6 5 4 34 34 H 0.97002 * 119.99921 * 359.97438 * 10 8 7 35 35 H 1.09002 * 109.46907 * 59.99826 * 11 10 8 36 36 H 1.08995 * 109.47254 * 300.00014 * 11 10 8 37 37 H 1.09004 * 109.61801 * 68.08073 * 14 12 11 38 38 H 1.09002 * 109.52448 * 307.66775 * 14 12 11 39 39 H 0.97001 * 120.00132 * 179.97438 * 19 18 16 40 40 H 1.08995 * 109.68009 * 69.44637 * 24 15 14 41 41 H 1.08998 * 109.67837 * 189.95158 * 24 15 14 42 42 H 1.09002 * 109.50962 * 172.22809 * 25 24 15 43 43 H 1.08996 * 109.51452 * 292.32644 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2493 1.1275 -1.0619 6 6 5.5440 1.0307 -0.8917 7 6 5.9328 0.9943 0.4075 8 6 7.3121 0.8848 0.8947 9 8 8.2331 0.8117 0.1029 10 7 7.5591 0.8651 2.2195 11 6 8.9366 0.7552 2.7062 12 6 8.9385 0.7557 4.2361 13 1 8.4201 1.6425 4.6006 14 6 10.3790 0.7644 4.7478 15 7 10.3603 0.5730 6.2067 16 6 11.0500 1.4156 7.0371 17 1 11.2528 2.4308 6.7292 18 6 11.4887 0.9651 8.2746 19 7 11.5372 -0.3261 8.5255 20 14 12.0172 2.1908 9.5812 21 1 10.8792 3.0871 9.9085 22 1 12.4388 1.4605 10.8036 23 1 13.1532 2.9995 9.0707 24 6 9.5735 -0.5468 6.7473 25 6 8.1678 -0.4884 6.1386 26 8 8.2741 -0.4162 4.7148 27 16 4.4847 1.1097 1.4047 28 1 -0.3633 0.5137 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6886 1.8464 0.8899 32 1 1.6885 1.8463 -0.8900 33 1 6.2418 0.9809 -1.7146 34 1 6.8249 0.9236 2.8507 35 1 9.5191 1.6016 2.3422 36 1 9.3776 -0.1727 2.3423 37 1 10.8465 1.7197 4.5089 38 1 10.9372 -0.0457 4.2785 39 1 11.8441 -0.6410 9.3901 40 1 10.0493 -1.4911 6.4828 41 1 9.5085 -0.4598 7.8319 42 1 7.6129 -1.3842 6.4174 43 1 7.6463 0.3934 6.5107 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035619002.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:56 Heat of formation + Delta-G solvation = -47.720615 kcal Electronic energy + Delta-G solvation = -26576.586506 eV Core-core repulsion = 22557.215697 eV Total energy + Delta-G solvation = -4019.370809 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.45744 -39.48022 -38.50201 -38.16161 -35.02886 -34.35328 -32.17105 -31.53865 -30.74530 -28.99860 -27.54104 -26.68582 -25.59857 -24.28242 -23.24680 -22.35717 -21.50515 -20.17179 -19.56096 -18.82997 -17.37361 -17.11431 -16.85195 -16.40008 -16.14670 -15.98052 -15.52330 -15.22950 -15.08116 -14.78907 -14.46742 -14.24609 -14.11564 -13.83007 -13.29403 -13.20091 -13.12598 -12.87702 -12.78571 -12.45763 -11.98862 -11.93699 -11.61218 -11.15756 -10.88621 -10.78596 -10.51041 -10.44770 -10.33070 -10.27613 -10.06743 -10.01472 -9.86989 -9.71976 -9.39769 -9.14163 -9.11215 -8.58807 -6.80119 -5.88454 -3.32865 -0.17617 0.76513 1.19961 2.07991 2.92073 3.01187 3.20847 3.32244 3.38219 3.38833 3.84521 4.15685 4.36228 4.38891 4.60920 4.74113 4.78782 4.84154 4.89704 4.96883 5.06416 5.19543 5.28874 5.40097 5.45908 5.71780 5.73743 5.76511 5.95278 6.08383 6.19835 6.31431 6.36038 6.43039 6.46460 6.69913 7.05039 7.18773 7.33564 7.47320 7.65978 7.79011 7.97848 8.29084 9.06882 9.69384 10.26163 11.19758 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.020010 B = 0.002115 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.960836 B =13233.458319 C =13978.911567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.137 3.863 4 C 0.044 3.956 5 N -0.459 5.459 6 C 0.115 3.885 7 C -0.282 4.282 8 C 0.593 3.407 9 O -0.526 6.526 10 N -0.712 5.712 11 C 0.130 3.870 12 C 0.064 3.936 13 H 0.059 0.941 14 C 0.122 3.878 15 N -0.593 5.593 16 C -0.257 4.257 17 H 0.068 0.932 18 C 0.003 3.997 19 N -0.902 5.902 20 Si 0.907 3.093 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.139 3.861 25 C 0.039 3.961 26 O -0.390 6.390 27 S 0.203 5.797 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.192 0.808 34 H 0.401 0.599 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.031 0.969 39 H 0.256 0.744 40 H 0.029 0.971 41 H 0.094 0.906 42 H 0.082 0.918 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.393 3.474 -14.428 26.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.058 3.942 4 C -0.231 4.231 5 N -0.175 5.175 6 C -0.043 4.043 7 C -0.406 4.406 8 C 0.377 3.623 9 O -0.404 6.404 10 N -0.363 5.363 11 C 0.007 3.993 12 C 0.004 3.996 13 H 0.077 0.923 14 C -0.005 4.005 15 N -0.317 5.317 16 C -0.386 4.386 17 H 0.086 0.914 18 C -0.196 4.196 19 N -0.546 5.546 20 Si 0.736 3.264 21 H -0.210 1.210 22 H -0.215 1.215 23 H -0.208 1.208 24 C 0.014 3.986 25 C -0.039 4.039 26 O -0.309 6.309 27 S 0.459 5.541 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.110 0.890 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.209 0.791 34 H 0.236 0.764 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.049 0.951 39 H 0.066 0.934 40 H 0.047 0.953 41 H 0.112 0.888 42 H 0.100 0.900 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -21.110 3.064 -14.314 25.689 hybrid contribution 0.462 0.850 0.551 1.114 sum -20.649 3.914 -13.763 25.122 Atomic orbital electron populations 1.22830 0.79718 1.03525 1.00433 1.87976 1.20531 1.26009 1.95546 1.20835 0.84233 0.86340 1.02831 1.26942 1.00690 1.03703 0.91761 1.66170 1.04892 1.15192 1.31236 1.22195 0.90552 0.95944 0.95622 1.25970 0.98406 1.18210 0.98044 1.16673 0.85778 0.77088 0.82721 1.90851 1.44130 1.50223 1.55211 1.45874 1.10546 1.73919 1.05947 1.21519 0.81658 1.03339 0.92783 1.22738 0.96847 0.88767 0.91268 0.92304 1.21348 0.92131 1.00044 0.87000 1.44030 1.55239 1.33265 0.99165 1.19145 1.29961 0.92038 0.97490 0.91381 1.25065 0.98947 0.95738 0.99858 1.70021 1.49857 1.11860 1.22903 0.86306 0.78548 0.80401 0.81123 1.20972 1.21535 1.20764 1.21446 0.87010 0.90282 0.99911 1.23337 1.00098 1.00229 0.80186 1.87795 1.78205 1.42325 1.22603 1.83979 0.96373 1.63296 1.10469 0.93522 0.93509 0.88961 0.90509 0.89677 0.79147 0.76448 0.89608 0.90120 0.91688 0.95145 0.93399 0.95288 0.88756 0.89961 0.94066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.38 -3.26 10.69 -35.23 -0.38 -3.64 16 3 C 0.14 0.97 6.51 36.01 0.23 1.20 16 4 C 0.04 0.43 7.02 -13.29 -0.09 0.33 16 5 N -0.46 -5.28 10.51 -11.50 -0.12 -5.40 16 6 C 0.11 1.33 11.09 -18.85 -0.21 1.12 16 7 C -0.28 -3.34 6.48 -37.10 -0.24 -3.58 16 8 C 0.59 8.34 7.79 -12.85 -0.10 8.24 16 9 O -0.53 -8.92 16.87 5.21 0.09 -8.83 16 10 N -0.71 -9.48 5.50 -61.62 -0.34 -9.82 16 11 C 0.13 1.91 5.35 -4.04 -0.02 1.89 16 12 C 0.06 1.08 2.80 -26.80 -0.07 1.00 16 13 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 14 C 0.12 2.47 6.00 -3.75 -0.02 2.45 16 15 N -0.59 -14.51 3.05 -172.09 -0.53 -15.03 16 16 C -0.26 -6.85 9.65 -15.06 -0.15 -7.00 16 17 H 0.07 1.76 7.88 -52.48 -0.41 1.35 16 18 C 0.00 0.08 4.95 -17.43 -0.09 -0.01 16 19 N -0.90 -25.60 11.15 55.49 0.62 -24.98 16 20 Si 0.91 21.11 29.58 -169.99 -5.03 16.08 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 C 0.14 3.24 5.44 -3.54 -0.02 3.22 16 25 C 0.04 0.73 6.98 37.31 0.26 0.99 16 26 O -0.39 -7.10 10.33 -35.23 -0.36 -7.46 16 27 S 0.20 1.87 22.31 -107.50 -2.40 -0.53 16 28 H 0.05 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.05 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.19 1.98 8.06 -52.48 -0.42 1.56 16 34 H 0.40 4.76 7.66 -40.82 -0.31 4.45 16 35 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.06 1.24 7.96 -51.93 -0.41 0.83 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.09 2.41 6.16 -51.93 -0.32 2.09 16 42 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 376.09 15.07 5.67 5.67 Total: -1.00 -32.85 376.09 -8.27 -41.13 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -6.09 Total: 1.70 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: 0.59 Total: 11.11 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: -0.37 Total: -55.23 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.65 Total: -19.93 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -2.40 Total: -0.53 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.85 -8.27 -41.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035619002.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.592 kcal (2) G-P(sol) polarization free energy of solvation -32.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds