Wall clock time and date at job start Sat Apr 11 2020 06:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35971 * 117.00340 * 2 1 4 4 C 1.37566 * 120.82786 * 180.29452 * 3 2 1 5 5 C 1.38044 * 114.24684 * 180.21621 * 4 3 2 6 6 C 1.47117 * 127.75831 * 179.80557 * 5 4 3 7 7 O 1.21635 * 119.99868 * 359.70661 * 6 5 4 8 8 N 1.34773 * 119.99847 * 179.97438 * 6 5 4 9 9 C 1.46504 * 119.99742 * 179.72247 * 8 6 5 10 10 C 1.52994 * 109.46941 * 176.05254 * 9 8 6 11 11 N 1.46507 * 109.54365 * 54.58368 * 10 9 8 12 12 C 1.36938 * 119.99845 * 62.70194 * 11 10 9 13 13 H 1.07999 * 120.00075 * 353.59129 * 12 11 10 14 14 C 1.38816 * 119.99816 * 173.59619 * 12 11 10 15 15 N 1.31622 * 119.99900 * 180.02562 * 14 12 11 16 16 Si 1.86796 * 120.00123 * 359.97438 * 14 12 11 17 17 H 1.48496 * 109.47172 * 90.00236 * 16 14 12 18 18 H 1.48495 * 109.47578 * 210.00513 * 16 14 12 19 19 H 1.48499 * 109.47104 * 330.00568 * 16 14 12 20 20 C 1.53173 * 109.54809 * 294.40650 * 10 9 8 21 21 C 1.53104 * 109.16120 * 183.24377 * 20 10 9 22 22 O 1.42899 * 109.48798 * 57.47172 * 21 20 10 23 23 C 1.42905 * 114.09657 * 298.88743 * 22 21 20 24 24 C 1.53096 * 109.41373 * 61.16351 * 23 22 21 25 25 S 1.77230 * 104.48104 * 359.54297 * 5 4 3 26 26 N 1.30360 * 120.82188 * 359.97438 * 3 2 1 27 27 H 1.09004 * 109.47191 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46849 * 300.00058 * 1 2 3 29 29 H 1.09004 * 109.47431 * 59.99702 * 1 2 3 30 30 H 1.07995 * 122.87617 * 0.02562 * 4 3 2 31 31 H 0.97000 * 120.00219 * 359.73022 * 8 6 5 32 32 H 1.09001 * 109.47247 * 296.05543 * 9 8 6 33 33 H 1.08994 * 109.47103 * 56.05347 * 9 8 6 34 34 H 0.97001 * 119.99711 * 242.70212 * 11 10 9 35 35 H 0.96996 * 119.99563 * 179.97438 * 15 14 12 36 36 H 1.09007 * 109.52110 * 303.05958 * 20 10 9 37 37 H 1.09004 * 109.52399 * 63.24183 * 20 10 9 38 38 H 1.09001 * 109.39927 * 297.48904 * 21 20 10 39 39 H 1.09000 * 109.49117 * 177.51074 * 21 20 10 40 40 H 1.08993 * 109.48315 * 301.17909 * 23 22 21 41 41 H 1.08996 * 109.48892 * 181.14381 * 23 22 21 42 42 H 1.08995 * 109.52377 * 182.48185 * 24 23 22 43 43 H 1.08993 * 109.57626 * 62.31986 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4189 1.3032 -0.0061 5 6 3.9006 2.5969 -0.0005 6 6 5.3049 3.0352 -0.0007 7 8 6.1993 2.2109 -0.0008 8 7 5.6004 4.3502 0.0048 9 6 6.9989 4.7866 0.0108 10 6 7.0572 6.3126 -0.0831 11 7 6.2499 6.9008 0.9887 12 6 6.5878 6.6842 2.2979 13 1 7.3846 5.9977 2.5435 14 6 5.9061 7.3468 3.3094 15 7 6.2311 7.1390 4.5678 16 14 4.5284 8.5346 2.8845 17 1 3.2388 7.8000 2.8364 18 1 4.4543 9.5973 3.9190 19 1 4.7968 9.1507 1.5603 20 6 6.5121 6.7637 -1.4416 21 6 6.6494 8.2841 -1.5585 22 8 8.0196 8.6533 -1.3906 23 6 8.5678 8.2992 -0.1192 24 6 8.5097 6.7793 0.0545 25 16 2.4471 3.6110 -0.0010 26 7 1.3521 2.3149 -0.0005 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 4.0643 0.4374 -0.0115 31 1 4.8871 5.0076 0.0049 32 1 7.4773 4.4608 0.9344 33 1 7.5194 4.3500 -0.8415 34 1 5.4762 7.4437 0.7708 35 1 5.7550 7.6023 5.2745 36 1 7.0807 6.2855 -2.2393 37 1 5.4618 6.4840 -1.5238 38 1 6.0468 8.7624 -0.7864 39 1 6.3038 8.6060 -2.5408 40 1 7.9903 8.7778 0.6716 41 1 9.6043 8.6319 -0.0648 42 1 8.8867 6.5108 1.0413 43 1 9.1201 6.3006 -0.7113 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278707357.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:05 Heat of formation + Delta-G solvation = -51.359020 kcal Electronic energy + Delta-G solvation = -28121.424864 eV Core-core repulsion = 24101.896282 eV Total energy + Delta-G solvation = -4019.528582 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -40.38036 -39.87029 -38.94539 -36.62319 -35.98534 -33.73249 -32.34027 -31.40201 -30.79945 -29.92507 -28.40143 -27.26494 -24.80508 -23.92746 -23.11118 -22.34431 -21.28274 -20.02349 -18.85958 -18.48580 -17.94129 -17.83855 -16.47681 -16.43057 -15.87799 -15.69465 -15.50624 -15.18369 -14.88985 -14.66588 -14.52261 -14.24182 -13.77936 -13.54413 -13.44011 -13.22811 -12.79217 -12.49551 -12.38449 -12.27864 -12.00350 -11.66934 -11.54821 -11.31785 -11.09262 -11.06614 -10.97535 -10.95130 -10.51840 -10.19601 -10.00217 -9.91397 -9.83965 -9.69274 -9.33615 -8.93099 -8.78426 -8.53731 -7.48727 -5.90666 -3.30625 0.04577 1.04385 1.40351 2.10283 2.75700 3.13362 3.24475 3.25610 3.35228 3.38829 4.23270 4.44433 4.49793 4.87506 4.89430 4.91426 4.99001 5.02311 5.08965 5.15145 5.28088 5.29819 5.38136 5.51319 5.55543 5.59087 5.83388 5.89961 5.91285 5.92648 6.06517 6.11589 6.21279 6.36393 6.41273 6.57380 6.61784 6.67447 6.81006 7.57100 7.60188 7.81861 8.21359 8.27204 9.01789 9.73801 9.91109 11.26573 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012392 B = 0.003666 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.903530 B = 7635.272655 C = 8577.265949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.295 6.295 3 C 0.304 3.696 4 C -0.136 4.136 5 C -0.170 4.170 6 C 0.588 3.412 7 O -0.525 6.525 8 N -0.689 5.689 9 C 0.118 3.882 10 C 0.194 3.806 11 N -0.739 5.739 12 C -0.248 4.248 13 H 0.093 0.907 14 C 0.015 3.985 15 N -0.925 5.925 16 Si 0.873 3.127 17 H -0.282 1.282 18 H -0.291 1.291 19 H -0.276 1.276 20 C -0.157 4.157 21 C 0.065 3.935 22 O -0.391 6.391 23 C 0.069 3.931 24 C -0.151 4.151 25 S 0.293 5.707 26 N -0.514 5.514 27 H 0.101 0.899 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.178 0.822 31 H 0.400 0.600 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.361 0.639 35 H 0.261 0.739 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.052 0.948 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.830 -6.781 -13.023 16.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.201 6.201 3 C 0.091 3.909 4 C -0.173 4.173 5 C -0.302 4.302 6 C 0.371 3.629 7 O -0.402 6.402 8 N -0.338 5.338 9 C -0.008 4.008 10 C 0.103 3.897 11 N -0.383 5.383 12 C -0.377 4.377 13 H 0.111 0.889 14 C -0.182 4.182 15 N -0.571 5.571 16 Si 0.703 3.297 17 H -0.209 1.209 18 H -0.217 1.217 19 H -0.202 1.202 20 C -0.195 4.195 21 C -0.012 4.012 22 O -0.310 6.310 23 C -0.007 4.007 24 C -0.191 4.191 25 S 0.442 5.558 26 N -0.356 5.356 27 H 0.120 0.880 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.195 0.805 31 H 0.236 0.764 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.195 0.805 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.103 0.897 40 H 0.085 0.915 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.313 -5.968 -12.917 15.998 hybrid contribution -0.952 -0.401 0.319 1.082 sum -8.265 -6.369 -12.599 16.359 Atomic orbital electron populations 1.22976 0.76781 1.03542 1.02602 1.86305 1.22941 1.22580 1.88308 1.19902 0.89802 0.85248 0.95933 1.20725 0.92263 0.98593 1.05736 1.26133 0.99627 0.97584 1.06820 1.16611 0.85032 0.83328 0.77965 1.90827 1.46567 1.52672 1.50171 1.45601 1.10398 1.05459 1.72386 1.21959 0.80345 0.96337 1.02121 1.19808 0.91955 0.90220 0.87747 1.42884 1.31485 1.61330 1.02596 1.18896 1.17001 1.21587 0.80220 0.88894 1.24657 0.99181 0.99248 0.95083 1.69686 1.43231 1.45889 0.98326 0.86758 0.83424 0.81968 0.77588 1.20889 1.21691 1.20155 1.22434 1.01641 0.97614 0.97807 1.22454 0.83844 0.93780 1.01100 1.87823 1.25643 1.81266 1.36247 1.22478 0.98349 0.94689 0.85233 1.22416 0.96914 0.96857 1.02891 1.85140 0.90097 1.11788 1.68737 1.76412 1.26878 1.01127 1.31186 0.88035 0.92063 0.92163 0.80511 0.76403 0.90438 0.91735 0.80510 0.92914 0.90498 0.91301 0.92952 0.89743 0.91548 0.89908 0.89654 0.92203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.43 101.05 1.05 1.36 16 2 O -0.30 -3.45 10.51 -19.65 -0.21 -3.66 16 3 C 0.30 4.01 7.36 -18.42 -0.14 3.87 16 4 C -0.14 -1.81 10.09 -39.90 -0.40 -2.22 16 5 C -0.17 -2.44 6.74 -36.05 -0.24 -2.68 16 6 C 0.59 9.64 7.80 -12.66 -0.10 9.54 16 7 O -0.52 -9.98 16.95 5.25 0.09 -9.89 16 8 N -0.69 -10.83 5.12 -61.49 -0.32 -11.15 16 9 C 0.12 1.91 4.37 -4.04 -0.02 1.89 16 10 C 0.19 3.10 0.41 -131.63 -0.05 3.05 16 11 N -0.74 -14.32 3.38 -47.06 -0.16 -14.48 16 12 C -0.25 -5.99 9.15 -15.06 -0.14 -6.13 16 13 H 0.09 2.48 7.02 -52.49 -0.37 2.11 16 14 C 0.02 0.40 5.50 -17.43 -0.10 0.31 16 15 N -0.93 -27.04 13.97 55.49 0.78 -26.26 16 16 Si 0.87 20.04 27.67 -169.99 -4.70 15.33 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.28 -5.85 6.62 56.52 0.37 -5.48 16 20 C -0.16 -2.09 4.80 -26.59 -0.13 -2.22 16 21 C 0.07 0.91 6.67 37.21 0.25 1.16 16 22 O -0.39 -6.20 10.77 -35.23 -0.38 -6.58 16 23 C 0.07 1.10 6.68 37.21 0.25 1.35 16 24 C -0.15 -2.39 4.78 -26.59 -0.13 -2.52 16 25 S 0.29 3.87 23.27 -107.50 -2.50 1.37 16 26 N -0.51 -7.02 11.03 29.19 0.32 -6.69 16 27 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 29 H 0.06 0.50 8.13 -51.93 -0.42 0.07 16 30 H 0.18 2.15 8.06 -52.49 -0.42 1.73 16 31 H 0.40 5.96 6.79 -40.82 -0.28 5.68 16 32 H 0.08 1.46 7.49 -51.93 -0.39 1.08 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.36 6.96 4.78 -40.82 -0.19 6.77 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 36 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 0.83 7.41 -51.93 -0.38 0.44 16 38 H 0.05 0.80 7.16 -51.93 -0.37 0.43 16 39 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.07 1.23 7.75 -51.93 -0.40 0.82 16 41 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.08 1.50 7.17 -51.93 -0.37 1.13 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 365.34 15.07 5.51 5.51 Total: -1.00 -30.31 365.34 -7.19 -37.50 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -5.73 Total: 12.22 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: 0.11 Total: 6.78 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: 0.62 Total: -58.58 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.50 Total: -20.12 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.70 Total: 15.33 kcal Atomic # 16 Polarization: 3.87 SS G_CDS: -2.50 Total: 1.37 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.31 -7.19 -37.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278707357.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.862 kcal (2) G-P(sol) polarization free energy of solvation -30.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds