Wall clock time and date at job start Sat Apr 11 2020 06:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35971 * 117.00340 * 2 1 4 4 C 1.37566 * 120.82786 * 180.29452 * 3 2 1 5 5 C 1.38044 * 114.24684 * 180.21621 * 4 3 2 6 6 C 1.47117 * 127.75831 * 179.80557 * 5 4 3 7 7 O 1.21635 * 119.99868 * 359.70661 * 6 5 4 8 8 N 1.34773 * 119.99847 * 179.97438 * 6 5 4 9 9 C 1.46504 * 119.99742 * 179.72247 * 8 6 5 10 10 C 1.52994 * 109.46941 * 176.05254 * 9 8 6 11 11 N 1.46507 * 109.54365 * 54.58368 * 10 9 8 12 12 C 1.36938 * 119.99845 * 62.70194 * 11 10 9 13 13 H 1.07999 * 120.00075 * 353.59129 * 12 11 10 14 14 C 1.38816 * 119.99816 * 173.59619 * 12 11 10 15 15 N 1.31622 * 119.99900 * 180.02562 * 14 12 11 16 16 Si 1.86796 * 120.00123 * 359.97438 * 14 12 11 17 17 H 1.48496 * 109.47172 * 90.00236 * 16 14 12 18 18 H 1.48495 * 109.47578 * 210.00513 * 16 14 12 19 19 H 1.48499 * 109.47104 * 330.00568 * 16 14 12 20 20 C 1.53173 * 109.54809 * 294.40650 * 10 9 8 21 21 C 1.53104 * 109.16120 * 183.24377 * 20 10 9 22 22 O 1.42899 * 109.48798 * 57.47172 * 21 20 10 23 23 C 1.42905 * 114.09657 * 298.88743 * 22 21 20 24 24 C 1.53096 * 109.41373 * 61.16351 * 23 22 21 25 25 S 1.77230 * 104.48104 * 359.54297 * 5 4 3 26 26 N 1.30360 * 120.82188 * 359.97438 * 3 2 1 27 27 H 1.09004 * 109.47191 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46849 * 300.00058 * 1 2 3 29 29 H 1.09004 * 109.47431 * 59.99702 * 1 2 3 30 30 H 1.07995 * 122.87617 * 0.02562 * 4 3 2 31 31 H 0.97000 * 120.00219 * 359.73022 * 8 6 5 32 32 H 1.09001 * 109.47247 * 296.05543 * 9 8 6 33 33 H 1.08994 * 109.47103 * 56.05347 * 9 8 6 34 34 H 0.97001 * 119.99711 * 242.70212 * 11 10 9 35 35 H 0.96996 * 119.99563 * 179.97438 * 15 14 12 36 36 H 1.09007 * 109.52110 * 303.05958 * 20 10 9 37 37 H 1.09004 * 109.52399 * 63.24183 * 20 10 9 38 38 H 1.09001 * 109.39927 * 297.48904 * 21 20 10 39 39 H 1.09000 * 109.49117 * 177.51074 * 21 20 10 40 40 H 1.08993 * 109.48315 * 301.17909 * 23 22 21 41 41 H 1.08996 * 109.48892 * 181.14381 * 23 22 21 42 42 H 1.08995 * 109.52377 * 182.48185 * 24 23 22 43 43 H 1.08993 * 109.57626 * 62.31986 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4189 1.3032 -0.0061 5 6 3.9006 2.5969 -0.0005 6 6 5.3049 3.0352 -0.0007 7 8 6.1993 2.2109 -0.0008 8 7 5.6004 4.3502 0.0048 9 6 6.9989 4.7866 0.0108 10 6 7.0572 6.3126 -0.0831 11 7 6.2499 6.9008 0.9887 12 6 6.5878 6.6842 2.2979 13 1 7.3846 5.9977 2.5435 14 6 5.9061 7.3468 3.3094 15 7 6.2311 7.1390 4.5678 16 14 4.5284 8.5346 2.8845 17 1 3.2388 7.8000 2.8364 18 1 4.4543 9.5973 3.9190 19 1 4.7968 9.1507 1.5603 20 6 6.5121 6.7637 -1.4416 21 6 6.6494 8.2841 -1.5585 22 8 8.0196 8.6533 -1.3906 23 6 8.5678 8.2992 -0.1192 24 6 8.5097 6.7793 0.0545 25 16 2.4471 3.6110 -0.0010 26 7 1.3521 2.3149 -0.0005 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 4.0643 0.4374 -0.0115 31 1 4.8871 5.0076 0.0049 32 1 7.4773 4.4608 0.9344 33 1 7.5194 4.3500 -0.8415 34 1 5.4762 7.4437 0.7708 35 1 5.7550 7.6023 5.2745 36 1 7.0807 6.2855 -2.2393 37 1 5.4618 6.4840 -1.5238 38 1 6.0468 8.7624 -0.7864 39 1 6.3038 8.6060 -2.5408 40 1 7.9903 8.7778 0.6716 41 1 9.6043 8.6319 -0.0648 42 1 8.8867 6.5108 1.0413 43 1 9.1201 6.3006 -0.7113 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278707357.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:05 Heat of formation + Delta-G solvation = -75.395541 kcal Electronic energy + Delta-G solvation = -28122.467166 eV Core-core repulsion = 24101.896282 eV Total energy + Delta-G solvation = -4020.570884 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.45564 -41.09053 -40.21969 -37.65652 -37.30696 -35.28031 -34.01286 -32.53060 -31.99672 -31.63145 -29.32671 -28.39266 -25.99317 -25.54028 -24.40648 -23.57136 -22.47447 -21.21293 -20.13913 -19.79532 -19.71845 -18.83657 -17.59192 -17.35045 -17.22827 -16.97016 -16.74517 -16.46537 -16.32686 -15.97950 -15.75588 -15.53744 -15.09938 -14.79692 -14.53669 -14.48472 -14.22091 -14.13600 -13.75430 -13.25884 -13.02331 -12.99258 -12.86088 -12.69583 -12.57659 -12.19812 -12.16307 -12.14593 -12.02253 -11.73130 -11.52138 -11.32404 -11.19297 -10.97307 -10.95174 -10.38011 -10.12963 -9.53815 -9.30986 -7.95134 -5.30824 -1.06040 -0.02096 0.36664 1.03850 1.39716 1.42663 1.50152 1.68057 1.90396 2.28817 2.52400 3.06536 3.34163 3.39676 3.49320 3.75212 3.80337 3.88074 4.07026 4.10055 4.21176 4.28458 4.33690 4.44832 4.51129 4.59345 4.69893 4.70129 4.73919 4.79414 4.87655 4.93838 5.01431 5.06913 5.16728 5.27463 5.29417 5.34335 5.86794 5.90193 6.26699 6.31872 6.36379 6.93082 7.12978 7.84294 8.04112 9.25815 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012392 B = 0.003666 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.903530 B = 7635.272655 C = 8577.265949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.301 6.301 3 C 0.303 3.697 4 C -0.129 4.129 5 C -0.188 4.188 6 C 0.590 3.410 7 O -0.556 6.556 8 N -0.685 5.685 9 C 0.124 3.876 10 C 0.191 3.809 11 N -0.736 5.736 12 C -0.206 4.206 13 H 0.059 0.941 14 C -0.055 4.055 15 N -0.982 5.982 16 Si 0.933 3.067 17 H -0.276 1.276 18 H -0.310 1.310 19 H -0.245 1.245 20 C -0.150 4.150 21 C 0.060 3.940 22 O -0.395 6.395 23 C 0.074 3.926 24 C -0.149 4.149 25 S 0.312 5.688 26 N -0.521 5.521 27 H 0.133 0.867 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.186 0.814 31 H 0.406 0.594 32 H 0.042 0.958 33 H 0.084 0.916 34 H 0.367 0.633 35 H 0.253 0.747 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.038 0.962 39 H 0.117 0.883 40 H 0.037 0.963 41 H 0.099 0.901 42 H 0.058 0.942 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.316 -6.759 -15.996 19.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.207 6.207 3 C 0.090 3.910 4 C -0.167 4.167 5 C -0.320 4.320 6 C 0.374 3.626 7 O -0.436 6.436 8 N -0.335 5.335 9 C -0.001 4.001 10 C 0.100 3.900 11 N -0.380 5.380 12 C -0.337 4.337 13 H 0.077 0.923 14 C -0.246 4.246 15 N -0.633 5.633 16 Si 0.762 3.238 17 H -0.203 1.203 18 H -0.237 1.237 19 H -0.169 1.169 20 C -0.188 4.188 21 C -0.017 4.017 22 O -0.314 6.314 23 C -0.003 4.003 24 C -0.188 4.188 25 S 0.462 5.538 26 N -0.363 5.363 27 H 0.151 0.849 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.203 0.797 31 H 0.242 0.758 32 H 0.061 0.939 33 H 0.102 0.898 34 H 0.201 0.799 35 H 0.062 0.938 36 H 0.116 0.884 37 H 0.106 0.894 38 H 0.057 0.943 39 H 0.135 0.865 40 H 0.055 0.945 41 H 0.117 0.883 42 H 0.076 0.924 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.815 -5.942 -15.973 19.187 hybrid contribution -0.470 -0.532 1.180 1.377 sum -9.285 -6.473 -14.794 18.627 Atomic orbital electron populations 1.23262 0.75000 1.05678 1.02522 1.86318 1.24693 1.21710 1.87961 1.19929 0.89774 0.85692 0.95602 1.20884 0.92665 0.98603 1.04511 1.25888 0.99038 0.98489 1.08538 1.16810 0.85616 0.83086 0.77089 1.90807 1.47773 1.53370 1.51649 1.45564 1.10278 1.05555 1.72104 1.21839 0.80723 0.96367 1.01218 1.20037 0.91801 0.89684 0.88440 1.42805 1.32158 1.61391 1.01603 1.18727 1.14212 1.18564 0.82223 0.92290 1.25332 1.02428 1.01987 0.94876 1.69876 1.45525 1.48280 0.99630 0.85748 0.80589 0.79441 0.78066 1.20252 1.23738 1.16944 1.22425 1.03021 0.97431 0.95875 1.22664 0.82709 0.93892 1.02428 1.87831 1.26709 1.81398 1.35450 1.22375 0.98887 0.94205 0.84807 1.22378 0.97024 0.97233 1.02205 1.85003 0.89056 1.11286 1.68437 1.76397 1.27124 1.01437 1.31389 0.84895 0.92423 0.91894 0.79684 0.75752 0.93907 0.89806 0.79897 0.93811 0.88422 0.89400 0.94348 0.86515 0.94463 0.88338 0.92363 0.89760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.43 113.37 1.18 1.62 16 2 O -0.30 -6.48 10.51 -93.23 -0.98 -7.46 16 3 C 0.30 7.50 7.36 84.75 0.62 8.13 16 4 C -0.13 -3.29 10.09 22.06 0.22 -3.06 16 5 C -0.19 -5.19 6.74 24.56 0.17 -5.03 16 6 C 0.59 18.95 7.80 86.57 0.68 19.62 16 7 O -0.56 -21.06 16.95 -4.14 -0.07 -21.13 16 8 N -0.69 -20.78 5.12 -466.69 -2.39 -23.17 16 9 C 0.12 3.92 4.37 86.38 0.38 4.30 16 10 C 0.19 5.79 0.41 3.72 0.00 5.79 16 11 N -0.74 -27.81 3.38 -302.80 -1.02 -28.84 16 12 C -0.21 -10.18 9.15 84.03 0.77 -9.41 16 13 H 0.06 3.31 7.02 -2.91 -0.02 3.29 16 14 C -0.05 -2.95 5.50 84.86 0.47 -2.48 16 15 N -0.98 -59.86 13.97 21.65 0.30 -59.56 16 16 Si 0.93 41.48 27.67 68.60 1.90 43.38 16 17 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 18 H -0.31 -14.72 7.11 99.48 0.71 -14.02 16 19 H -0.25 -9.52 6.62 99.48 0.66 -8.86 16 20 C -0.15 -3.43 4.80 30.69 0.15 -3.29 16 21 C 0.06 1.45 6.67 72.02 0.48 1.93 16 22 O -0.39 -11.36 10.77 -148.98 -1.60 -12.96 16 23 C 0.07 2.27 6.68 72.01 0.48 2.75 16 24 C -0.15 -4.56 4.78 30.69 0.15 -4.41 16 25 S 0.31 7.72 23.27 -56.49 -1.31 6.41 16 26 N -0.52 -13.30 11.03 -175.21 -1.93 -15.24 16 27 H 0.13 1.09 8.14 -2.38 -0.02 1.07 16 28 H 0.06 0.90 8.13 -2.39 -0.02 0.88 16 29 H 0.06 0.90 8.13 -2.38 -0.02 0.88 16 30 H 0.19 4.32 8.06 -2.91 -0.02 4.30 16 31 H 0.41 11.34 6.79 -92.71 -0.63 10.71 16 32 H 0.04 1.66 7.49 -2.39 -0.02 1.64 16 33 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.37 13.32 4.78 -92.71 -0.44 12.88 16 35 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 36 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 37 H 0.09 1.73 7.41 -2.38 -0.02 1.71 16 38 H 0.04 1.05 7.16 -2.39 -0.02 1.03 16 39 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.04 1.35 7.75 -2.39 -0.02 1.34 16 41 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 42 H 0.06 2.10 7.17 -2.39 -0.02 2.09 16 43 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -67.56 365.34 -1.43 -69.00 By element: Atomic # 1 Polarization: 33.18 SS G_CDS: -0.06 Total: 33.12 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: 5.74 Total: 16.45 kcal Atomic # 7 Polarization: -121.76 SS G_CDS: -5.05 Total: -126.80 kcal Atomic # 8 Polarization: -38.90 SS G_CDS: -2.65 Total: -41.55 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 1.90 Total: 43.38 kcal Atomic # 16 Polarization: 7.72 SS G_CDS: -1.31 Total: 6.41 kcal Total: -67.56 -1.43 -69.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278707357.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.400 kcal (2) G-P(sol) polarization free energy of solvation -67.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds