Wall clock time and date at job start Sat Apr 11 2020 06:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00428 * 2 1 4 4 C 1.50694 * 109.47119 * 179.97438 * 3 2 1 5 5 N 1.30947 * 122.90781 * 270.18892 * 4 3 2 6 6 C 1.29428 * 117.36785 * 180.30718 * 5 4 3 7 7 S 1.70955 * 110.38905 * 359.72929 * 6 5 4 8 8 C 1.35664 * 122.90849 * 89.99603 * 4 3 2 9 9 C 1.46684 * 126.12533 * 0.02562 * 8 4 3 10 10 O 1.21686 * 120.00133 * 359.71031 * 9 8 4 11 11 N 1.34776 * 119.99846 * 179.70958 * 9 8 4 12 12 C 1.46502 * 120.00097 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47330 * 180.02562 * 12 11 9 14 14 O 1.42903 * 110.88601 * 303.88366 * 13 12 11 15 15 C 1.55155 * 111.00656 * 180.02562 * 13 12 11 16 16 C 1.54321 * 102.94327 * 206.38710 * 15 13 12 17 17 N 1.47024 * 107.26902 * 22.18783 * 16 15 13 18 18 C 1.36945 * 125.64529 * 181.02795 * 17 16 15 19 19 H 1.07993 * 119.99956 * 168.97531 * 18 17 16 20 20 C 1.38804 * 119.99858 * 348.96917 * 18 17 16 21 21 N 1.31619 * 120.00008 * 165.61387 * 20 18 17 22 22 Si 1.86799 * 120.00344 * 345.61227 * 20 18 17 23 23 H 1.48508 * 109.47333 * 65.29582 * 22 20 18 24 24 H 1.48504 * 109.47487 * 185.29203 * 22 20 18 25 25 H 1.48496 * 109.47478 * 305.29213 * 22 20 18 26 26 C 1.47423 * 108.70580 * 1.28870 * 17 16 15 27 27 H 1.09000 * 109.47274 * 300.00917 * 1 2 3 28 28 H 1.09011 * 109.46674 * 59.99992 * 1 2 3 29 29 H 1.09001 * 109.47934 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47409 * 59.99418 * 3 2 1 31 31 H 1.09001 * 109.46715 * 299.99900 * 3 2 1 32 32 H 1.07996 * 124.80743 * 179.69821 * 6 5 4 33 33 H 0.96998 * 120.00222 * 0.02562 * 11 9 8 34 34 H 1.09008 * 109.46721 * 60.00684 * 12 11 9 35 35 H 1.08997 * 109.47330 * 300.00272 * 12 11 9 36 36 H 0.96703 * 113.99934 * 56.11626 * 14 13 12 37 37 H 1.08998 * 110.72398 * 88.02109 * 15 13 12 38 38 H 1.09003 * 110.87009 * 324.81958 * 15 13 12 39 39 H 1.09007 * 109.88056 * 262.77694 * 16 15 13 40 40 H 1.08997 * 109.88609 * 141.61110 * 16 15 13 41 41 H 0.97003 * 120.00039 * 354.92489 * 21 20 18 42 42 H 1.09002 * 110.36342 * 94.48436 * 26 17 16 43 43 H 1.08997 * 110.36760 * 216.80298 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1863 0.0006 5 7 4.2210 1.1266 1.1003 6 6 5.5057 1.0314 0.9759 7 16 5.9436 1.0011 -0.6763 8 6 4.2477 1.1277 -1.1380 9 6 3.7251 1.1694 -2.5080 10 8 2.5268 1.2595 -2.6996 11 7 4.5721 1.1079 -3.5545 12 6 4.0502 1.1489 -4.9227 13 6 5.2120 1.0632 -5.9146 14 8 6.1628 2.1031 -5.6766 15 6 4.6981 1.1044 -7.3780 16 6 5.8007 0.3525 -8.1529 17 7 6.5105 -0.4983 -7.1864 18 6 7.5741 -1.3128 -7.4705 19 1 8.1400 -1.7617 -6.6677 20 6 7.9246 -1.5615 -8.7904 21 7 9.0928 -2.0992 -9.0709 22 14 6.7385 -1.1333 -10.1685 23 1 6.5533 0.3392 -10.2226 24 1 7.2896 -1.6106 -11.4622 25 1 5.4297 -1.7879 -9.9164 26 6 5.8837 -0.3341 -5.8622 27 1 -0.3634 0.5140 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3635 -1.0276 -0.0005 30 1 1.6887 1.8464 0.8899 31 1 1.6887 1.8463 -0.8900 32 1 6.2026 0.9789 1.7993 33 1 5.5273 1.0357 -3.4018 34 1 3.5084 2.0822 -5.0770 35 1 3.3760 0.3071 -5.0798 36 1 6.5123 2.1177 -4.7751 37 1 4.6137 2.1331 -7.7284 38 1 3.7425 0.5880 -7.4687 39 1 6.4941 1.0665 -8.5974 40 1 5.3518 -0.2650 -8.9308 41 1 9.7381 -2.2537 -8.3633 42 1 5.1369 -1.1107 -5.6972 43 1 6.6404 -0.3616 -5.0783 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278809305.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:09 Heat of formation + Delta-G solvation = -33.145670 kcal Electronic energy + Delta-G solvation = -27666.108765 eV Core-core repulsion = 23647.369973 eV Total energy + Delta-G solvation = -4018.738792 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.83409 -39.76749 -38.62111 -37.73613 -35.56585 -34.39478 -32.43420 -31.83167 -30.21942 -29.14080 -28.19008 -26.58706 -25.76761 -24.89375 -23.46912 -21.85098 -21.00547 -20.29913 -19.87598 -19.01759 -17.68211 -17.53691 -16.81911 -16.36042 -16.33415 -15.78186 -15.63689 -15.47128 -15.24931 -14.85400 -14.66001 -14.46001 -14.04963 -13.76842 -13.58231 -13.26959 -13.24936 -12.96641 -12.59776 -12.29479 -11.93163 -11.85805 -11.58957 -11.44196 -11.32033 -11.08133 -10.82025 -10.53273 -10.18080 -10.07504 -9.99138 -9.89335 -9.75454 -9.49092 -9.34401 -9.32207 -9.00140 -8.72155 -7.06065 -6.33380 -3.25347 -0.21278 0.72984 1.10566 1.96695 2.70762 2.78321 3.42154 3.48393 3.51579 3.70595 3.98296 4.18358 4.36805 4.50977 4.57599 4.61458 4.70766 4.82154 5.03524 5.04964 5.13884 5.14968 5.23160 5.32002 5.40986 5.47555 5.53166 5.56167 5.63307 5.75096 5.92574 6.03610 6.06411 6.20872 6.27695 6.48745 6.74691 6.87598 6.99931 7.17765 7.58825 7.69582 7.79352 8.30164 9.00702 9.51948 10.18168 11.17357 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017458 B = 0.002765 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.503136 B =10124.020989 C =10873.891336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.379 6.379 3 C 0.128 3.872 4 C 0.141 3.859 5 N -0.463 5.463 6 C 0.035 3.965 7 S 0.181 5.819 8 C -0.273 4.273 9 C 0.599 3.401 10 O -0.515 6.515 11 N -0.720 5.720 12 C 0.105 3.895 13 C 0.100 3.900 14 O -0.534 6.534 15 C -0.112 4.112 16 C 0.114 3.886 17 N -0.605 5.605 18 C -0.322 4.322 19 H 0.077 0.923 20 C -0.021 4.021 21 N -0.928 5.928 22 Si 1.071 2.929 23 H -0.285 1.285 24 H -0.302 1.302 25 H -0.298 1.298 26 C 0.117 3.883 27 H 0.040 0.960 28 H 0.046 0.954 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.210 0.790 33 H 0.396 0.604 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.365 0.635 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.051 0.949 40 H 0.031 0.969 41 H 0.261 0.739 42 H 0.033 0.967 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.074 9.943 20.323 25.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.298 6.298 3 C 0.050 3.950 4 C 0.002 3.998 5 N -0.177 5.177 6 C -0.260 4.260 7 S 0.437 5.563 8 C -0.398 4.398 9 C 0.384 3.616 10 O -0.392 6.392 11 N -0.372 5.372 12 C -0.019 4.019 13 C 0.058 3.942 14 O -0.339 6.339 15 C -0.150 4.150 16 C -0.010 4.010 17 N -0.333 5.333 18 C -0.449 4.449 19 H 0.095 0.905 20 C -0.220 4.220 21 N -0.569 5.569 22 Si 0.905 3.095 23 H -0.212 1.212 24 H -0.230 1.230 25 H -0.226 1.226 26 C -0.010 4.010 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.111 0.889 32 H 0.226 0.774 33 H 0.231 0.769 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.211 0.789 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.069 0.931 40 H 0.048 0.952 41 H 0.071 0.929 42 H 0.051 0.949 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -12.266 9.747 17.896 23.785 hybrid contribution -0.081 0.046 2.620 2.622 sum -12.347 9.793 20.516 25.870 Atomic orbital electron populations 1.22735 0.80343 1.02894 1.00130 1.87896 1.20074 1.26314 1.95509 1.21023 0.85072 0.86337 1.02608 1.20253 0.97242 0.97107 0.85236 1.66045 1.04984 1.15644 1.31008 1.28750 0.95142 1.01639 1.00500 1.84120 1.04721 1.63977 1.03510 1.25623 0.96967 1.18104 0.99117 1.16577 0.86078 0.76738 0.82230 1.90801 1.14253 1.49408 1.84775 1.45838 1.09956 1.75056 1.06375 1.22092 0.97045 1.03676 0.79070 1.22765 0.87467 0.89058 0.94901 1.86643 1.60504 1.52440 1.34267 1.22574 0.98891 1.01737 0.91805 1.21979 0.92951 0.93023 0.93086 1.44672 1.36020 1.49569 1.03021 1.20139 1.04828 1.25434 0.94510 0.90520 1.25861 1.00255 0.98372 0.97506 1.70900 1.05355 1.45551 1.35069 0.83834 0.74067 0.75836 0.75786 1.21246 1.22987 1.22640 1.22204 0.95597 0.92746 0.90461 0.94120 0.93515 0.89507 0.91779 0.88919 0.77387 0.76889 0.90058 0.89668 0.78894 0.89937 0.89789 0.93098 0.95221 0.92876 0.94904 0.93766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 11.01 101.05 1.11 1.43 16 2 O -0.38 -4.86 10.69 -35.23 -0.38 -5.23 16 3 C 0.13 1.48 5.74 36.00 0.21 1.69 16 4 C 0.14 1.67 6.42 -83.89 -0.54 1.13 16 5 N -0.46 -5.03 10.50 -11.53 -0.12 -5.15 16 6 C 0.04 0.27 12.22 51.75 0.63 0.90 16 7 S 0.18 1.40 22.35 -107.50 -2.40 -1.00 16 8 C -0.27 -3.08 6.48 -37.09 -0.24 -3.32 16 9 C 0.60 7.63 7.78 -12.85 -0.10 7.53 16 10 O -0.51 -7.77 14.27 5.20 0.07 -7.70 16 11 N -0.72 -8.21 5.20 -61.61 -0.32 -8.53 16 12 C 0.10 1.32 4.89 -4.04 -0.02 1.30 16 13 C 0.10 1.52 0.97 -88.35 -0.09 1.44 16 14 O -0.53 -8.14 13.21 -35.23 -0.47 -8.61 16 15 C -0.11 -1.81 6.15 -24.90 -0.15 -1.97 16 16 C 0.11 2.47 4.61 -3.06 -0.01 2.46 16 17 N -0.61 -14.59 3.32 -169.94 -0.56 -15.15 16 18 C -0.32 -9.17 10.56 -15.06 -0.16 -9.33 16 19 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 20 C -0.02 -0.61 5.50 -17.43 -0.10 -0.70 16 21 N -0.93 -29.18 13.70 55.49 0.76 -28.42 16 22 Si 1.07 26.86 24.53 -169.99 -4.17 22.69 16 23 H -0.29 -6.56 5.43 56.52 0.31 -6.25 16 24 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 25 H -0.30 -7.16 6.84 56.52 0.39 -6.77 16 26 C 0.12 2.19 6.23 -2.41 -0.02 2.18 16 27 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.41 8.14 -51.92 -0.42 -0.02 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.09 1.11 6.02 -51.93 -0.31 0.79 16 32 H 0.21 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.40 3.88 6.47 -40.82 -0.26 3.62 16 34 H 0.08 0.99 8.14 -51.92 -0.42 0.57 16 35 H 0.09 1.11 8.07 -51.93 -0.42 0.69 16 36 H 0.36 4.13 7.69 45.56 0.35 4.48 16 37 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.08 1.18 8.04 -51.93 -0.42 0.76 16 39 H 0.05 1.19 6.78 -51.93 -0.35 0.83 16 40 H 0.03 0.68 3.82 -51.93 -0.20 0.48 16 41 H 0.26 8.11 8.73 -40.82 -0.36 7.75 16 42 H 0.03 0.62 7.99 -51.93 -0.41 0.20 16 43 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 362.42 15.07 5.46 5.46 Total: -1.00 -36.77 362.42 -6.69 -43.46 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -5.10 Total: 3.46 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: 0.53 Total: 4.73 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: -0.25 Total: -57.25 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.77 Total: -21.54 kcal Atomic # 14 Polarization: 26.86 SS G_CDS: -4.17 Total: 22.69 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -2.40 Total: -1.00 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.77 -6.69 -43.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278809305.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.312 kcal (2) G-P(sol) polarization free energy of solvation -36.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds