Wall clock time and date at job start Sat Apr 11 2020 06:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00428 * 2 1 4 4 C 1.50694 * 109.47119 * 179.97438 * 3 2 1 5 5 N 1.30947 * 122.90781 * 270.18892 * 4 3 2 6 6 C 1.29428 * 117.36785 * 180.30718 * 5 4 3 7 7 S 1.70955 * 110.38905 * 359.72929 * 6 5 4 8 8 C 1.35664 * 122.90849 * 89.99603 * 4 3 2 9 9 C 1.46684 * 126.12533 * 0.02562 * 8 4 3 10 10 O 1.21686 * 120.00133 * 359.71031 * 9 8 4 11 11 N 1.34776 * 119.99846 * 179.70958 * 9 8 4 12 12 C 1.46502 * 120.00097 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47330 * 180.02562 * 12 11 9 14 14 O 1.42903 * 110.88601 * 303.88366 * 13 12 11 15 15 C 1.55155 * 111.00656 * 180.02562 * 13 12 11 16 16 C 1.54321 * 102.94327 * 206.38710 * 15 13 12 17 17 N 1.47024 * 107.26902 * 22.18783 * 16 15 13 18 18 C 1.36945 * 125.64529 * 181.02795 * 17 16 15 19 19 H 1.07993 * 119.99956 * 168.97531 * 18 17 16 20 20 C 1.38804 * 119.99858 * 348.96917 * 18 17 16 21 21 N 1.31619 * 120.00008 * 165.61387 * 20 18 17 22 22 Si 1.86799 * 120.00344 * 345.61227 * 20 18 17 23 23 H 1.48508 * 109.47333 * 65.29582 * 22 20 18 24 24 H 1.48504 * 109.47487 * 185.29203 * 22 20 18 25 25 H 1.48496 * 109.47478 * 305.29213 * 22 20 18 26 26 C 1.47423 * 108.70580 * 1.28870 * 17 16 15 27 27 H 1.09000 * 109.47274 * 300.00917 * 1 2 3 28 28 H 1.09011 * 109.46674 * 59.99992 * 1 2 3 29 29 H 1.09001 * 109.47934 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47409 * 59.99418 * 3 2 1 31 31 H 1.09001 * 109.46715 * 299.99900 * 3 2 1 32 32 H 1.07996 * 124.80743 * 179.69821 * 6 5 4 33 33 H 0.96998 * 120.00222 * 0.02562 * 11 9 8 34 34 H 1.09008 * 109.46721 * 60.00684 * 12 11 9 35 35 H 1.08997 * 109.47330 * 300.00272 * 12 11 9 36 36 H 0.96703 * 113.99934 * 56.11626 * 14 13 12 37 37 H 1.08998 * 110.72398 * 88.02109 * 15 13 12 38 38 H 1.09003 * 110.87009 * 324.81958 * 15 13 12 39 39 H 1.09007 * 109.88056 * 262.77694 * 16 15 13 40 40 H 1.08997 * 109.88609 * 141.61110 * 16 15 13 41 41 H 0.97003 * 120.00039 * 354.92489 * 21 20 18 42 42 H 1.09002 * 110.36342 * 94.48436 * 26 17 16 43 43 H 1.08997 * 110.36760 * 216.80298 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1863 0.0006 5 7 4.2210 1.1266 1.1003 6 6 5.5057 1.0314 0.9759 7 16 5.9436 1.0011 -0.6763 8 6 4.2477 1.1277 -1.1380 9 6 3.7251 1.1694 -2.5080 10 8 2.5268 1.2595 -2.6996 11 7 4.5721 1.1079 -3.5545 12 6 4.0502 1.1489 -4.9227 13 6 5.2120 1.0632 -5.9146 14 8 6.1628 2.1031 -5.6766 15 6 4.6981 1.1044 -7.3780 16 6 5.8007 0.3525 -8.1529 17 7 6.5105 -0.4983 -7.1864 18 6 7.5741 -1.3128 -7.4705 19 1 8.1400 -1.7617 -6.6677 20 6 7.9246 -1.5615 -8.7904 21 7 9.0928 -2.0992 -9.0709 22 14 6.7385 -1.1333 -10.1685 23 1 6.5533 0.3392 -10.2226 24 1 7.2896 -1.6106 -11.4622 25 1 5.4297 -1.7879 -9.9164 26 6 5.8837 -0.3341 -5.8622 27 1 -0.3634 0.5140 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3635 -1.0276 -0.0005 30 1 1.6887 1.8464 0.8899 31 1 1.6887 1.8463 -0.8900 32 1 6.2026 0.9789 1.7993 33 1 5.5273 1.0357 -3.4018 34 1 3.5084 2.0822 -5.0770 35 1 3.3760 0.3071 -5.0798 36 1 6.5123 2.1177 -4.7751 37 1 4.6137 2.1331 -7.7284 38 1 3.7425 0.5880 -7.4687 39 1 6.4941 1.0665 -8.5974 40 1 5.3518 -0.2650 -8.9308 41 1 9.7381 -2.2537 -8.3633 42 1 5.1369 -1.1107 -5.6972 43 1 6.6404 -0.3616 -5.0783 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278809305.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:09 Heat of formation + Delta-G solvation = -65.480082 kcal Electronic energy + Delta-G solvation = -27667.510890 eV Core-core repulsion = 23647.369973 eV Total energy + Delta-G solvation = -4020.140917 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.68330 -40.82316 -39.79865 -38.56161 -37.07148 -35.45266 -34.40103 -32.67137 -31.74818 -30.45158 -29.24696 -27.58023 -26.96174 -25.62081 -25.03382 -22.97140 -22.60108 -21.58204 -20.84054 -19.79225 -19.54590 -18.62423 -17.70525 -17.55434 -17.29561 -17.01465 -16.56951 -16.50918 -16.24388 -16.10222 -15.65675 -15.54631 -15.36592 -15.10775 -14.97160 -14.65294 -14.48118 -13.97402 -13.59088 -13.45168 -13.34518 -13.16610 -12.93312 -12.83898 -12.56260 -12.34798 -12.06984 -11.82408 -11.47414 -11.46610 -11.25626 -10.94460 -10.89402 -10.75719 -10.69414 -10.59246 -10.33527 -10.09910 -9.08529 -8.65174 -5.48006 -0.93910 0.05340 0.43503 1.21178 1.41450 1.50267 1.71822 1.78868 1.88215 2.55439 2.81617 3.02638 3.07270 3.22337 3.27491 3.44590 3.61238 3.65532 3.76546 3.84002 4.03868 4.26757 4.32954 4.35006 4.44762 4.51821 4.54187 4.58351 4.65539 4.68958 4.79522 4.81582 4.83968 4.85900 4.97729 5.12158 5.16757 5.52008 6.09234 6.09881 6.11794 6.46106 6.65149 6.81045 6.86736 7.42816 8.06931 8.87782 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017458 B = 0.002765 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.503136 B =10124.020989 C =10873.891336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.407 6.407 3 C 0.128 3.872 4 C 0.129 3.871 5 N -0.492 5.492 6 C 0.047 3.953 7 S 0.229 5.771 8 C -0.305 4.305 9 C 0.599 3.401 10 O -0.544 6.544 11 N -0.714 5.714 12 C 0.117 3.883 13 C 0.120 3.880 14 O -0.548 6.548 15 C -0.106 4.106 16 C 0.103 3.897 17 N -0.627 5.627 18 C -0.308 4.308 19 H 0.048 0.952 20 C -0.081 4.081 21 N -0.966 5.966 22 Si 1.109 2.891 23 H -0.253 1.253 24 H -0.314 1.314 25 H -0.281 1.281 26 C 0.109 3.891 27 H 0.058 0.942 28 H 0.045 0.955 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.249 0.751 33 H 0.404 0.596 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.381 0.619 37 H 0.104 0.896 38 H 0.111 0.889 39 H 0.032 0.968 40 H 0.028 0.972 41 H 0.248 0.752 42 H 0.039 0.961 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.443 11.454 21.592 27.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.326 6.326 3 C 0.049 3.951 4 C -0.011 4.011 5 N -0.206 5.206 6 C -0.247 4.247 7 S 0.486 5.514 8 C -0.429 4.429 9 C 0.385 3.615 10 O -0.424 6.424 11 N -0.366 5.366 12 C -0.007 4.007 13 C 0.077 3.923 14 O -0.354 6.354 15 C -0.144 4.144 16 C -0.022 4.022 17 N -0.355 5.355 18 C -0.437 4.437 19 H 0.066 0.934 20 C -0.274 4.274 21 N -0.610 5.610 22 Si 0.937 3.063 23 H -0.178 1.178 24 H -0.244 1.244 25 H -0.209 1.209 26 C -0.017 4.017 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.115 0.885 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.265 0.735 33 H 0.240 0.760 34 H 0.112 0.888 35 H 0.103 0.897 36 H 0.230 0.770 37 H 0.123 0.877 38 H 0.130 0.870 39 H 0.050 0.950 40 H 0.045 0.955 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.641 11.289 19.223 26.135 hybrid contribution 0.445 -0.444 2.412 2.493 sum -13.196 10.846 21.635 27.565 Atomic orbital electron populations 1.22907 0.78824 1.03857 1.00962 1.87846 1.21927 1.27190 1.95660 1.21027 0.85478 0.85957 1.02623 1.20403 0.97562 0.97238 0.85877 1.66088 1.06279 1.17427 1.30841 1.29492 0.94763 0.98746 1.01748 1.83932 1.01676 1.62780 1.03025 1.25560 0.99290 1.19844 0.98254 1.16753 0.85757 0.76086 0.82891 1.90782 1.15456 1.50775 1.85344 1.45728 1.10292 1.74776 1.05835 1.21904 0.95654 1.04358 0.78759 1.22486 0.87725 0.86675 0.95376 1.86614 1.60770 1.52019 1.36024 1.22631 0.98020 1.02518 0.91253 1.22094 0.93955 0.92606 0.93502 1.44757 1.35604 1.49289 1.05831 1.20056 1.05319 1.24670 0.93631 0.93433 1.27115 1.00958 0.98888 1.00405 1.71000 1.06559 1.48727 1.34731 0.83401 0.72744 0.77725 0.72468 1.17827 1.24385 1.20854 1.22459 0.95771 0.95450 0.88001 0.92342 0.93600 0.88530 0.90655 0.89889 0.73478 0.75979 0.88827 0.89661 0.76955 0.87749 0.87047 0.95027 0.95479 0.94354 0.94313 0.93558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 113.37 1.25 1.78 16 2 O -0.41 -10.31 10.69 -148.98 -1.59 -11.91 16 3 C 0.13 2.91 5.74 71.23 0.41 3.32 16 4 C 0.13 2.95 6.42 42.09 0.27 3.22 16 5 N -0.49 -9.85 10.50 -190.40 -2.00 -11.85 16 6 C 0.05 0.58 12.22 130.60 1.60 2.17 16 7 S 0.23 2.98 22.35 -56.49 -1.26 1.72 16 8 C -0.30 -6.46 6.48 23.88 0.15 -6.30 16 9 C 0.60 14.44 7.78 86.45 0.67 15.11 16 10 O -0.54 -15.98 14.27 -4.30 -0.06 -16.04 16 11 N -0.71 -14.68 5.20 -467.07 -2.43 -17.10 16 12 C 0.12 2.59 4.89 86.38 0.42 3.01 16 13 C 0.12 3.27 0.97 -9.33 -0.01 3.27 16 14 O -0.55 -15.10 13.21 -148.98 -1.97 -17.07 16 15 C -0.11 -3.06 6.15 31.78 0.20 -2.86 16 16 C 0.10 4.21 4.61 86.73 0.40 4.61 16 17 N -0.63 -29.63 3.32 -691.57 -2.30 -31.92 16 18 C -0.31 -17.81 10.56 84.03 0.89 -16.93 16 19 H 0.05 2.95 8.06 -2.91 -0.02 2.92 16 20 C -0.08 -4.88 5.50 84.86 0.47 -4.41 16 21 N -0.97 -62.74 13.70 21.65 0.30 -62.44 16 22 Si 1.11 54.13 24.53 68.60 1.68 55.81 16 23 H -0.25 -10.96 5.43 99.48 0.54 -10.42 16 24 H -0.31 -15.89 7.11 99.48 0.71 -15.18 16 25 H -0.28 -12.79 6.84 99.48 0.68 -12.11 16 26 C 0.11 3.89 6.23 86.93 0.54 4.43 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.08 2.00 6.02 -2.39 -0.01 1.99 16 32 H 0.25 0.75 8.06 -2.91 -0.02 0.72 16 33 H 0.40 6.93 6.47 -92.71 -0.60 6.33 16 34 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 35 H 0.09 1.95 8.07 -2.39 -0.02 1.93 16 36 H 0.38 7.53 7.69 -74.06 -0.57 6.97 16 37 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.11 2.62 8.04 -2.39 -0.02 2.60 16 39 H 0.03 1.41 6.78 -2.38 -0.02 1.40 16 40 H 0.03 1.16 3.82 -2.39 -0.01 1.15 16 41 H 0.25 16.09 8.73 -92.71 -0.81 15.28 16 42 H 0.04 1.38 7.99 -2.39 -0.02 1.36 16 43 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -82.31 362.42 -2.70 -85.01 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -0.33 Total: 15.38 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: 7.25 Total: 10.42 kcal Atomic # 7 Polarization: -116.90 SS G_CDS: -6.43 Total: -123.32 kcal Atomic # 8 Polarization: -41.40 SS G_CDS: -3.62 Total: -45.02 kcal Atomic # 14 Polarization: 54.13 SS G_CDS: 1.68 Total: 55.81 kcal Atomic # 16 Polarization: 2.98 SS G_CDS: -1.26 Total: 1.72 kcal Total: -82.31 -2.70 -85.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278809305.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.534 kcal (2) G-P(sol) polarization free energy of solvation -82.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds