Wall clock time and date at job start Sat Apr 11 2020 06:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46501 * 119.99795 * 2 1 4 4 C 1.52994 * 109.47568 * 89.99704 * 3 2 1 5 5 H 1.08998 * 109.47098 * 59.99383 * 4 3 2 6 6 O 1.42907 * 109.47010 * 299.99726 * 4 3 2 7 7 C 1.52997 * 109.47470 * 179.97438 * 4 3 2 8 8 N 1.46901 * 109.47218 * 184.99684 * 7 4 3 9 9 C 1.46899 * 110.99755 * 180.02562 * 8 7 4 10 10 C 1.50698 * 109.47079 * 180.02562 * 9 8 7 11 11 O 1.21291 * 119.99940 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00081 * 179.97438 * 10 9 8 13 13 C 1.37103 * 119.99952 * 179.97438 * 12 10 9 14 14 H 1.08000 * 119.99820 * 0.02562 * 13 12 10 15 15 C 1.38945 * 120.00032 * 180.02562 * 13 12 10 16 16 N 1.31419 * 120.00019 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00232 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47230 * 89.99888 * 17 15 13 19 19 H 1.48496 * 109.47257 * 210.00084 * 17 15 13 20 20 H 1.48503 * 109.46804 * 329.99945 * 17 15 13 21 21 C 1.34773 * 119.99735 * 179.97438 * 2 1 3 22 22 O 1.21640 * 119.99898 * 187.15249 * 21 2 1 23 23 C 1.47189 * 120.00311 * 7.16169 * 21 2 1 24 24 C 1.44422 * 123.46133 * 189.88082 * 23 21 2 25 25 C 1.32766 * 113.08575 * 179.80443 * 24 23 21 26 26 S 1.75508 * 110.57378 * 0.44061 * 25 24 23 27 27 C 1.36007 * 123.45952 * 10.17309 * 23 21 2 28 28 H 1.09007 * 109.46613 * 95.83756 * 1 2 3 29 29 H 1.08997 * 109.47516 * 215.82987 * 1 2 3 30 30 H 1.08994 * 109.47405 * 335.84193 * 1 2 3 31 31 H 1.08997 * 109.46891 * 329.99303 * 3 2 1 32 32 H 1.09003 * 109.46577 * 209.99461 * 3 2 1 33 33 H 0.96703 * 113.99925 * 300.00095 * 6 4 3 34 34 H 1.09003 * 109.46959 * 65.00175 * 7 4 3 35 35 H 1.08996 * 109.47148 * 304.99901 * 7 4 3 36 36 H 1.00896 * 111.00107 * 56.04842 * 8 7 4 37 37 H 1.08999 * 109.47088 * 300.00210 * 9 8 7 38 38 H 1.09005 * 109.47281 * 60.00209 * 9 8 7 39 39 H 0.96996 * 119.99803 * 0.02562 * 12 10 9 40 40 H 0.96993 * 120.00197 * 180.02562 * 16 15 13 41 41 H 1.08002 * 123.45777 * 359.97438 * 24 23 21 42 42 H 1.08001 * 124.71666 * 180.17688 * 25 24 23 43 43 H 1.07994 * 124.59333 * 0.02562 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7106 1.4424 5 1 3.0415 0.9509 1.9563 6 8 1.2038 1.8815 2.1160 7 6 3.2180 3.0353 1.4424 8 7 3.5672 3.3991 2.8221 9 6 4.3043 4.6691 2.8611 10 6 4.6451 5.0085 4.2893 11 8 4.3075 4.2652 5.1863 12 7 5.3258 6.1374 4.5697 13 6 5.6354 6.4464 5.8691 14 1 5.3341 5.7850 6.6679 15 6 6.3367 7.6105 6.1582 16 7 6.7029 8.4156 5.1862 17 14 6.7591 8.0312 7.9285 18 1 8.0789 7.4454 8.2751 19 1 6.8155 9.5066 8.0868 20 1 5.7187 7.4760 8.8310 21 6 2.1389 -1.1672 0.0005 22 8 3.3482 -1.1713 0.1317 23 6 1.4115 -2.4370 -0.1578 24 6 2.0197 -3.7325 0.0359 25 6 1.1745 -4.7383 -0.1560 26 16 -0.4129 -4.1342 -0.5982 27 6 0.0992 -2.5110 -0.5072 28 1 -0.3633 -0.1045 -1.0224 29 1 -0.3634 -0.8331 0.6015 30 1 -0.3634 0.9376 0.4205 31 1 1.6084 2.0283 -0.5139 32 1 3.1500 1.1383 -0.5138 33 1 0.6266 2.5442 1.7124 34 1 2.5934 3.8158 1.0079 35 1 4.1287 2.9286 0.8531 36 1 4.0922 2.6621 3.2685 37 1 5.2226 4.5742 2.2815 38 1 3.6869 5.4608 2.4365 39 1 5.5961 6.7316 3.8522 40 1 7.1928 9.2280 5.3880 41 1 3.0550 -3.8691 0.3115 42 1 1.4295 -5.7832 -0.0581 43 1 -0.5327 -1.6569 -0.7014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284377434.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:14 Heat of formation + Delta-G solvation = -58.373462 kcal Electronic energy + Delta-G solvation = -26297.352032 eV Core-core repulsion = 22277.519281 eV Total energy + Delta-G solvation = -4019.832751 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.61214 -38.47917 -37.88562 -37.02592 -35.69928 -34.71345 -33.74780 -31.48412 -31.16705 -29.75301 -27.78727 -27.18126 -25.32192 -24.38446 -23.31613 -21.90039 -21.04110 -19.65004 -19.21372 -17.98115 -17.86793 -17.29715 -16.90034 -16.20822 -16.03424 -15.82343 -15.39769 -15.00621 -14.69190 -14.48887 -14.38491 -14.16619 -13.83723 -13.60711 -13.40299 -13.30175 -13.11928 -13.01414 -12.79633 -12.44415 -12.14033 -11.82157 -11.73102 -11.52925 -11.50734 -11.46742 -11.15673 -11.01062 -10.43493 -10.36730 -10.19008 -10.08337 -9.47867 -9.43778 -8.98822 -8.78084 -8.40567 -8.00966 -7.92280 -6.38810 -3.79447 0.36112 1.13378 1.49498 1.64323 2.56738 3.02972 3.20340 3.28604 3.35097 3.94281 4.03529 4.21449 4.24771 4.32186 4.45558 4.63397 4.75594 4.81572 4.86105 4.94221 4.97635 5.04292 5.14718 5.26336 5.27152 5.35893 5.38153 5.40774 5.57616 5.66158 5.81877 5.82181 5.96526 5.99243 6.13630 6.29366 6.97469 7.21910 7.58210 7.58858 7.72982 7.85597 8.09705 8.64827 9.21187 9.57588 10.09554 10.79042 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.030944 B = 0.001622 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.656118 B =17257.568960 C =17483.178899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.601 5.601 3 C 0.087 3.913 4 C 0.096 3.904 5 H 0.103 0.897 6 O -0.540 6.540 7 C 0.030 3.970 8 N -0.659 5.659 9 C 0.050 3.950 10 C 0.441 3.559 11 O -0.581 6.581 12 N -0.565 5.565 13 C -0.298 4.298 14 H 0.103 0.897 15 C 0.021 3.979 16 N -0.903 5.903 17 Si 0.930 3.070 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.269 1.269 21 C 0.576 3.424 22 O -0.533 6.533 23 C -0.153 4.153 24 C -0.085 4.085 25 C -0.235 4.235 26 S 0.172 5.828 27 C -0.233 4.233 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.366 0.634 34 H 0.074 0.926 35 H 0.037 0.963 36 H 0.351 0.649 37 H 0.042 0.958 38 H 0.085 0.915 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.154 0.846 42 H 0.169 0.831 43 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.087 -20.919 -19.395 32.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.333 5.333 3 C -0.037 4.037 4 C 0.035 3.965 5 H 0.121 0.879 6 O -0.344 6.344 7 C -0.101 4.101 8 N -0.292 5.292 9 C -0.082 4.082 10 C 0.227 3.773 11 O -0.464 6.464 12 N -0.202 5.202 13 C -0.428 4.428 14 H 0.121 0.879 15 C -0.180 4.180 16 N -0.544 5.544 17 Si 0.758 3.242 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.194 1.194 21 C 0.364 3.636 22 O -0.410 6.410 23 C -0.171 4.171 24 C -0.114 4.114 25 C -0.370 4.370 26 S 0.438 5.562 27 C -0.370 4.370 28 H 0.077 0.923 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.212 0.788 34 H 0.093 0.907 35 H 0.055 0.945 36 H 0.170 0.830 37 H 0.060 0.940 38 H 0.103 0.897 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.172 0.828 42 H 0.187 0.813 43 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -17.288 -22.110 -18.527 33.630 hybrid contribution 2.450 1.663 -0.044 2.961 sum -14.838 -20.447 -18.571 31.355 Atomic orbital electron populations 1.22394 0.79742 1.04589 1.00731 1.47442 1.06896 1.05499 1.73449 1.22229 0.98616 0.84752 0.98085 1.22309 0.85976 0.96496 0.91670 0.87935 1.86702 1.28281 1.62603 1.56813 1.22601 0.99245 0.97014 0.91222 1.59981 1.49606 1.05111 1.14476 1.21687 0.96652 0.93153 0.96726 1.19809 0.83848 0.83957 0.89735 1.90536 1.57220 1.51087 1.47594 1.41860 1.49131 1.20007 1.09184 1.19715 1.32652 1.05931 0.84505 0.87924 1.25259 0.97144 0.95857 0.99739 1.69615 1.39447 1.13326 1.32059 0.85849 0.78965 0.77373 0.82054 1.20446 1.20941 1.19406 1.17685 0.86711 0.82815 0.76419 1.90814 1.13868 1.86959 1.49399 1.20272 0.93424 0.94493 1.08907 1.21176 1.01208 0.89341 0.99657 1.25516 0.96909 1.03670 1.10893 1.83128 1.11857 0.96138 1.65113 1.26957 1.00065 1.04050 1.05947 0.92323 0.89871 0.89950 0.89779 0.88821 0.78751 0.90731 0.94542 0.82958 0.93965 0.89693 0.77492 0.91924 0.82840 0.81319 0.78791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.37 8.26 59.85 0.49 0.87 16 2 N -0.60 -5.45 2.80 -182.94 -0.51 -5.96 16 3 C 0.09 0.76 5.02 -4.04 -0.02 0.74 16 4 C 0.10 1.09 3.41 -26.74 -0.09 1.00 16 5 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 6 O -0.54 -6.37 12.11 -35.23 -0.43 -6.80 16 7 C 0.03 0.36 5.32 -3.83 -0.02 0.34 16 8 N -0.66 -11.18 6.07 -115.06 -0.70 -11.88 16 9 C 0.05 0.92 6.17 -4.98 -0.03 0.89 16 10 C 0.44 10.79 7.82 -10.99 -0.09 10.70 16 11 O -0.58 -16.44 15.78 5.55 0.09 -16.35 16 12 N -0.56 -14.68 5.29 -10.96 -0.06 -14.74 16 13 C -0.30 -8.52 9.68 -14.93 -0.14 -8.67 16 14 H 0.10 3.08 7.16 -52.49 -0.38 2.70 16 15 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 16 N -0.90 -24.91 13.05 55.50 0.72 -24.19 16 17 Si 0.93 21.45 29.55 -169.99 -5.02 16.42 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 21 C 0.58 6.79 7.62 -12.63 -0.10 6.70 16 22 O -0.53 -8.20 16.48 5.24 0.09 -8.12 16 23 C -0.15 -1.47 5.82 -104.63 -0.61 -2.08 16 24 C -0.08 -0.77 10.12 -39.02 -0.39 -1.16 16 25 C -0.24 -1.56 11.12 28.86 0.32 -1.24 16 26 S 0.17 0.94 23.02 -107.50 -2.48 -1.53 16 27 C -0.23 -1.54 8.76 29.93 0.26 -1.28 16 28 H 0.06 0.20 6.99 -51.93 -0.36 -0.17 16 29 H 0.08 0.46 5.60 -51.93 -0.29 0.17 16 30 H 0.08 0.37 7.02 -51.93 -0.36 0.01 16 31 H 0.08 0.49 8.07 -51.93 -0.42 0.07 16 32 H 0.09 0.92 7.53 -51.93 -0.39 0.52 16 33 H 0.37 2.91 8.80 45.56 0.40 3.31 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.35 6.44 8.43 -39.29 -0.33 6.11 16 37 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 40 H 0.27 7.06 8.31 -40.82 -0.34 6.73 16 41 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 42 H 0.17 0.73 8.06 -52.49 -0.42 0.31 16 43 H 0.20 0.82 3.88 -52.49 -0.20 0.62 16 LS Contribution 376.60 15.07 5.68 5.68 Total: -1.00 -36.67 376.60 -7.89 -44.56 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: -4.75 Total: 15.62 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: -0.51 Total: 7.29 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: -0.54 Total: -56.77 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -0.25 Total: -31.27 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.48 Total: -1.53 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.67 -7.89 -44.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284377434.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.816 kcal (2) G-P(sol) polarization free energy of solvation -36.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds