Wall clock time and date at job start Sat Apr 11 2020 06:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46501 * 119.99690 * 2 1 4 4 C 1.53002 * 109.47321 * 89.99954 * 3 2 1 5 5 N 1.46492 * 109.47317 * 180.02562 * 4 3 2 6 6 C 1.46503 * 119.99743 * 269.99644 * 5 4 3 7 7 C 1.34778 * 120.00556 * 90.00391 * 5 4 3 8 8 O 1.21284 * 119.99600 * 359.97438 * 7 5 4 9 9 C 1.50697 * 120.00291 * 180.02562 * 7 5 4 10 10 C 1.50702 * 109.46965 * 179.97438 * 9 7 5 11 11 C 1.41385 * 128.00459 * 90.00055 * 10 9 7 12 12 N 1.30179 * 106.39389 * 179.97438 * 11 10 9 13 13 O 1.20927 * 111.60367 * 359.97438 * 12 11 10 14 14 C 1.34037 * 111.56699 * 359.97438 * 13 12 11 15 15 C 1.34770 * 120.00253 * 180.02562 * 2 1 3 16 16 O 1.21284 * 119.99968 * 180.02562 * 15 2 1 17 17 C 1.50697 * 119.99924 * 359.97438 * 15 2 1 18 18 S 1.81009 * 109.47240 * 180.02562 * 17 15 2 19 19 C 1.76197 * 100.00008 * 180.02562 * 18 17 15 20 20 H 1.07997 * 120.00035 * 359.97438 * 19 18 17 21 21 C 1.38800 * 119.99636 * 180.02562 * 19 18 17 22 22 N 1.31632 * 119.99574 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00099 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47288 * 90.00332 * 23 21 19 25 25 H 1.48510 * 109.46739 * 209.99989 * 23 21 19 26 26 H 1.48501 * 109.47142 * 329.99728 * 23 21 19 27 27 H 1.09001 * 109.46614 * 90.00061 * 1 2 3 28 28 H 1.09000 * 109.46676 * 209.99751 * 1 2 3 29 29 H 1.08994 * 109.47297 * 329.99857 * 1 2 3 30 30 H 1.09006 * 109.47290 * 330.00271 * 3 2 1 31 31 H 1.08991 * 109.47209 * 209.99737 * 3 2 1 32 32 H 1.09004 * 109.47162 * 59.99745 * 4 3 2 33 33 H 1.09005 * 109.46815 * 300.00233 * 4 3 2 34 34 H 1.09003 * 109.47295 * 269.99825 * 6 5 4 35 35 H 1.08994 * 109.46985 * 30.00384 * 6 5 4 36 36 H 1.09008 * 109.46965 * 150.00489 * 6 5 4 37 37 H 1.08997 * 109.47662 * 59.99660 * 9 7 5 38 38 H 1.08998 * 109.46934 * 299.99061 * 9 7 5 39 39 H 1.07993 * 126.80227 * 359.70041 * 11 10 9 40 40 H 1.08002 * 126.77549 * 180.02562 * 14 13 12 41 41 H 1.08997 * 109.47662 * 299.99953 * 17 15 2 42 42 H 1.09002 * 109.47369 * 60.00391 * 17 15 2 43 43 H 0.97003 * 119.99827 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 1.4425 5 7 3.1844 2.9795 1.4425 6 6 4.6494 2.9802 1.4424 7 6 2.5100 4.1465 1.4427 8 8 1.2972 4.1459 1.4425 9 6 3.2629 5.4519 1.4422 10 6 2.2831 6.5969 1.4419 11 6 1.7173 7.2587 2.5559 12 7 0.9308 8.1784 2.0763 13 8 0.9313 8.1784 0.8670 14 6 1.7422 7.2316 0.3746 15 6 2.1390 -1.1671 -0.0005 16 8 3.3518 -1.1670 -0.0001 17 6 1.3855 -2.4722 -0.0005 18 16 2.5618 -3.8480 -0.0005 19 6 1.4417 -5.2082 -0.0013 20 1 0.3765 -5.0305 -0.0012 21 6 1.9286 -6.5080 -0.0010 22 7 1.0918 -7.5241 -0.0021 23 14 3.7711 -6.8153 0.0010 24 1 4.2579 -6.8970 1.4016 25 1 4.0606 -8.0926 -0.6990 26 1 4.4596 -5.7006 -0.6981 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 1.6084 2.0285 -0.5138 31 1 3.1499 1.1385 -0.5137 32 1 3.0416 0.9509 1.9564 33 1 1.5000 1.8408 1.9563 34 1 5.0128 2.9803 2.4701 35 1 5.0130 2.0904 0.9285 36 1 5.0123 3.8704 0.9286 37 1 3.8891 5.5098 0.5519 38 1 3.8899 5.5100 2.3318 39 1 1.8981 7.0411 3.5981 40 1 1.9272 7.0166 -0.6675 41 1 0.7592 -2.5303 0.8896 42 1 0.7586 -2.5298 -0.8903 43 1 1.4320 -8.4325 -0.0015 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001285354287.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:19 Heat of formation + Delta-G solvation = 4.037117 kcal Electronic energy + Delta-G solvation = -26414.274948 eV Core-core repulsion = 22397.148523 eV Total energy + Delta-G solvation = -4017.126425 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.29469 -40.42622 -39.49748 -36.40092 -35.26478 -35.00969 -32.58859 -32.46198 -31.36459 -29.52469 -28.40469 -27.18731 -26.21250 -25.62790 -23.79794 -23.25094 -21.96173 -19.62710 -19.36524 -18.26046 -18.00551 -17.71891 -17.34732 -16.86336 -16.62387 -16.24971 -15.69844 -15.38621 -15.13924 -14.96215 -14.13795 -13.99630 -13.92401 -13.58599 -13.44013 -13.37989 -13.29301 -13.06935 -12.81291 -12.72522 -12.67696 -12.48438 -12.34760 -12.01388 -11.62723 -11.29790 -11.16322 -11.03579 -10.75803 -10.62256 -10.32202 -9.89009 -9.79107 -9.56853 -9.32467 -9.02914 -8.56434 -8.52542 -6.95160 -6.31130 -4.03263 1.11646 1.81663 2.19092 2.46198 2.76935 2.86107 2.90732 3.24095 3.30663 3.47369 3.57905 3.86390 4.13312 4.22643 4.30289 4.34828 4.55602 4.66836 4.68509 4.79890 4.83787 4.87835 5.06549 5.07540 5.08091 5.16540 5.18837 5.24409 5.27185 5.34510 5.40881 5.52111 5.60836 5.66765 5.72975 5.81270 5.98398 6.01345 6.50290 6.93768 7.36376 7.75082 7.87363 7.91855 8.35020 8.39623 9.14848 10.78065 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.032047 B = 0.001866 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.497431 B =15005.490521 C =15557.685736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.620 5.620 3 C 0.107 3.893 4 C 0.100 3.900 5 N -0.612 5.612 6 C 0.072 3.928 7 C 0.512 3.488 8 O -0.530 6.530 9 C -0.062 4.062 10 C -0.188 4.188 11 C 0.004 3.996 12 N -0.365 5.365 13 O 0.097 5.903 14 C -0.043 4.043 15 C 0.532 3.468 16 O -0.519 6.519 17 C -0.121 4.121 18 S -0.144 6.144 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.236 1.236 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.188 0.812 40 H 0.215 0.785 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.043 29.431 1.632 29.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.356 5.356 3 C -0.018 4.018 4 C -0.024 4.024 5 N -0.346 5.346 6 C -0.071 4.071 7 C 0.299 3.701 8 O -0.406 6.406 9 C -0.102 4.102 10 C -0.192 4.192 11 C -0.175 4.175 12 N -0.069 5.069 13 O 0.033 5.967 14 C -0.124 4.124 15 C 0.320 3.680 16 O -0.394 6.394 17 C -0.272 4.272 18 S 0.083 5.917 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.516 5.516 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.160 1.160 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.205 0.795 40 H 0.232 0.768 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.345 30.159 2.180 30.706 hybrid contribution -0.189 -1.254 -0.063 1.270 sum 5.156 28.904 2.116 29.437 Atomic orbital electron populations 1.21852 0.79061 1.03522 1.02148 1.47764 1.07156 1.05278 1.75416 1.21662 0.98272 0.85133 0.96685 1.21906 0.98212 0.84280 0.98005 1.47802 1.07380 1.05799 1.73663 1.21941 0.78808 1.03925 1.02430 1.20554 0.88112 0.85049 0.76361 1.90741 1.13805 1.87197 1.48842 1.19927 0.96158 0.88365 1.05764 1.20736 1.04580 1.01331 0.92582 1.24912 0.96422 0.94247 1.01901 1.73879 1.19981 1.21657 0.91389 1.84823 1.50767 1.45299 1.15797 1.25777 0.93941 0.91545 1.01182 1.20362 0.87930 0.84663 0.75044 1.90676 1.13668 1.86877 1.48139 1.23317 1.03104 0.95047 1.05716 1.84746 1.11999 0.97562 1.97430 1.22305 0.94870 0.90868 1.58841 0.89374 1.24719 0.98543 0.94877 0.93191 1.69940 1.34791 0.98881 1.47989 0.86730 0.85358 0.79815 0.79899 1.19227 1.19940 1.15950 0.92420 0.90394 0.90967 0.90534 0.89736 0.89661 0.89649 0.92080 0.90001 0.90813 0.87252 0.87264 0.79491 0.76821 0.88443 0.88432 0.91930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.80 10.24 59.85 0.61 1.42 16 2 N -0.62 -8.15 2.87 -181.57 -0.52 -8.67 16 3 C 0.11 1.20 5.73 -4.04 -0.02 1.18 16 4 C 0.10 1.04 5.73 -4.05 -0.02 1.01 16 5 N -0.61 -4.94 2.87 -181.57 -0.52 -5.46 16 6 C 0.07 0.36 10.24 59.85 0.61 0.97 16 7 C 0.51 4.43 7.67 -10.99 -0.08 4.34 16 8 O -0.53 -6.77 15.61 5.55 0.09 -6.69 16 9 C -0.06 -0.30 4.84 -29.04 -0.14 -0.44 16 10 C -0.19 -1.33 4.82 -104.42 -0.50 -1.83 16 11 C 0.00 0.04 12.16 -17.06 -0.21 -0.17 16 12 N -0.37 -3.79 12.07 30.36 0.37 -3.42 16 13 O 0.10 0.88 11.20 17.18 0.19 1.07 16 14 C -0.04 -0.27 12.26 29.74 0.36 0.09 16 15 C 0.53 9.22 7.69 -10.99 -0.08 9.14 16 16 O -0.52 -10.53 15.44 5.55 0.09 -10.44 16 17 C -0.12 -2.31 4.71 36.00 0.17 -2.14 16 18 S -0.14 -3.58 18.55 -107.50 -1.99 -5.57 16 19 C -0.52 -14.84 10.04 30.94 0.31 -14.53 16 20 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 21 C 0.10 2.76 5.50 -17.43 -0.10 2.67 16 22 N -0.88 -26.30 13.97 55.49 0.78 -25.53 16 23 Si 0.86 21.49 27.74 -169.99 -4.72 16.77 16 24 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 26 H -0.24 -5.87 6.74 56.52 0.38 -5.49 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.81 6.44 -51.93 -0.33 0.47 16 29 H 0.07 0.65 8.07 -51.93 -0.42 0.24 16 30 H 0.08 0.80 8.07 -51.93 -0.42 0.38 16 31 H 0.08 1.03 7.42 -51.93 -0.39 0.64 16 32 H 0.08 0.97 8.07 -51.93 -0.42 0.55 16 33 H 0.09 0.98 7.42 -51.93 -0.39 0.59 16 34 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.08 0.49 8.07 -51.93 -0.42 0.08 16 36 H 0.07 0.17 6.44 -51.92 -0.33 -0.16 16 37 H 0.11 0.25 7.40 -51.93 -0.38 -0.13 16 38 H 0.11 0.32 8.11 -51.93 -0.42 -0.10 16 39 H 0.19 1.14 8.06 -52.49 -0.42 0.72 16 40 H 0.22 0.55 8.06 -52.49 -0.42 0.12 16 41 H 0.10 1.73 7.40 -51.92 -0.38 1.35 16 42 H 0.10 1.75 8.11 -51.92 -0.42 1.33 16 43 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 382.68 15.07 5.77 5.77 Total: -1.00 -37.41 382.68 -5.57 -42.98 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -6.00 Total: -2.52 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: 0.91 Total: 1.70 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: 0.10 Total: -43.08 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: 0.36 Total: -16.06 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.72 Total: 16.77 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.57 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.41 -5.57 -42.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285354287.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.016 kcal (2) G-P(sol) polarization free energy of solvation -37.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds