Wall clock time and date at job start Sat Apr 11 2020 06:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46501 * 119.99690 * 2 1 4 4 C 1.53002 * 109.47321 * 89.99954 * 3 2 1 5 5 N 1.46492 * 109.47317 * 180.02562 * 4 3 2 6 6 C 1.46503 * 119.99743 * 269.99644 * 5 4 3 7 7 C 1.34778 * 120.00556 * 90.00391 * 5 4 3 8 8 O 1.21284 * 119.99600 * 359.97438 * 7 5 4 9 9 C 1.50697 * 120.00291 * 180.02562 * 7 5 4 10 10 C 1.50702 * 109.46965 * 179.97438 * 9 7 5 11 11 C 1.41385 * 128.00459 * 90.00055 * 10 9 7 12 12 N 1.30179 * 106.39389 * 179.97438 * 11 10 9 13 13 O 1.20927 * 111.60367 * 359.97438 * 12 11 10 14 14 C 1.34037 * 111.56699 * 359.97438 * 13 12 11 15 15 C 1.34770 * 120.00253 * 180.02562 * 2 1 3 16 16 O 1.21284 * 119.99968 * 180.02562 * 15 2 1 17 17 C 1.50697 * 119.99924 * 359.97438 * 15 2 1 18 18 S 1.81009 * 109.47240 * 180.02562 * 17 15 2 19 19 C 1.76197 * 100.00008 * 180.02562 * 18 17 15 20 20 H 1.07997 * 120.00035 * 359.97438 * 19 18 17 21 21 C 1.38800 * 119.99636 * 180.02562 * 19 18 17 22 22 N 1.31632 * 119.99574 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00099 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47288 * 90.00332 * 23 21 19 25 25 H 1.48510 * 109.46739 * 209.99989 * 23 21 19 26 26 H 1.48501 * 109.47142 * 329.99728 * 23 21 19 27 27 H 1.09001 * 109.46614 * 90.00061 * 1 2 3 28 28 H 1.09000 * 109.46676 * 209.99751 * 1 2 3 29 29 H 1.08994 * 109.47297 * 329.99857 * 1 2 3 30 30 H 1.09006 * 109.47290 * 330.00271 * 3 2 1 31 31 H 1.08991 * 109.47209 * 209.99737 * 3 2 1 32 32 H 1.09004 * 109.47162 * 59.99745 * 4 3 2 33 33 H 1.09005 * 109.46815 * 300.00233 * 4 3 2 34 34 H 1.09003 * 109.47295 * 269.99825 * 6 5 4 35 35 H 1.08994 * 109.46985 * 30.00384 * 6 5 4 36 36 H 1.09008 * 109.46965 * 150.00489 * 6 5 4 37 37 H 1.08997 * 109.47662 * 59.99660 * 9 7 5 38 38 H 1.08998 * 109.46934 * 299.99061 * 9 7 5 39 39 H 1.07993 * 126.80227 * 359.70041 * 11 10 9 40 40 H 1.08002 * 126.77549 * 180.02562 * 14 13 12 41 41 H 1.08997 * 109.47662 * 299.99953 * 17 15 2 42 42 H 1.09002 * 109.47369 * 60.00391 * 17 15 2 43 43 H 0.97003 * 119.99827 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 1.4425 5 7 3.1844 2.9795 1.4425 6 6 4.6494 2.9802 1.4424 7 6 2.5100 4.1465 1.4427 8 8 1.2972 4.1459 1.4425 9 6 3.2629 5.4519 1.4422 10 6 2.2831 6.5969 1.4419 11 6 1.7173 7.2587 2.5559 12 7 0.9308 8.1784 2.0763 13 8 0.9313 8.1784 0.8670 14 6 1.7422 7.2316 0.3746 15 6 2.1390 -1.1671 -0.0005 16 8 3.3518 -1.1670 -0.0001 17 6 1.3855 -2.4722 -0.0005 18 16 2.5618 -3.8480 -0.0005 19 6 1.4417 -5.2082 -0.0013 20 1 0.3765 -5.0305 -0.0012 21 6 1.9286 -6.5080 -0.0010 22 7 1.0918 -7.5241 -0.0021 23 14 3.7711 -6.8153 0.0010 24 1 4.2579 -6.8970 1.4016 25 1 4.0606 -8.0926 -0.6990 26 1 4.4596 -5.7006 -0.6981 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 1.6084 2.0285 -0.5138 31 1 3.1499 1.1385 -0.5137 32 1 3.0416 0.9509 1.9564 33 1 1.5000 1.8408 1.9563 34 1 5.0128 2.9803 2.4701 35 1 5.0130 2.0904 0.9285 36 1 5.0123 3.8704 0.9286 37 1 3.8891 5.5098 0.5519 38 1 3.8899 5.5100 2.3318 39 1 1.8981 7.0411 3.5981 40 1 1.9272 7.0166 -0.6675 41 1 0.7592 -2.5303 0.8896 42 1 0.7586 -2.5298 -0.8903 43 1 1.4320 -8.4325 -0.0015 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001285354287.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:19 Heat of formation + Delta-G solvation = -21.685595 kcal Electronic energy + Delta-G solvation = -26415.390368 eV Core-core repulsion = 22397.148523 eV Total energy + Delta-G solvation = -4018.241846 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.87596 -41.24885 -40.62563 -37.30318 -36.25015 -35.56383 -34.66997 -33.19574 -32.34758 -30.48780 -29.21803 -27.89583 -27.86405 -27.00059 -24.67221 -23.86073 -22.56557 -20.75427 -20.21911 -19.58174 -18.78809 -18.61058 -18.25016 -17.81575 -17.59595 -17.18950 -17.04696 -16.63579 -16.39734 -15.85494 -15.57435 -14.97076 -14.87480 -14.78124 -14.40367 -14.24811 -14.17865 -13.95600 -13.85726 -13.64291 -13.37337 -13.36514 -13.19833 -13.08091 -13.02310 -12.96639 -12.65461 -12.14256 -12.04138 -11.85723 -11.37392 -11.16830 -11.06681 -10.92885 -10.53555 -10.32280 -10.14841 -9.50349 -8.99826 -8.51161 -6.22332 0.60886 0.96802 1.24334 1.32005 1.44354 1.46479 1.53410 1.61456 1.87412 2.24779 2.29145 2.45357 2.68317 2.87011 3.37820 3.50818 3.65039 3.78707 3.91571 3.99706 4.04806 4.13733 4.23158 4.24930 4.33885 4.37862 4.44034 4.58019 4.60016 4.63088 4.69036 4.77864 4.82606 4.87632 4.93034 4.99824 5.14434 5.27561 5.53691 5.70787 6.11632 6.16314 6.36595 6.93645 7.02583 7.13155 7.32589 8.61179 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.032047 B = 0.001866 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.497431 B =15005.490521 C =15557.685736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.608 5.608 3 C 0.112 3.888 4 C 0.107 3.893 5 N -0.611 5.611 6 C 0.067 3.933 7 C 0.510 3.490 8 O -0.578 6.578 9 C -0.052 4.052 10 C -0.199 4.199 11 C -0.006 4.006 12 N -0.404 5.404 13 O 0.080 5.920 14 C -0.037 4.037 15 C 0.535 3.465 16 O -0.554 6.554 17 C -0.109 4.109 18 S -0.171 6.171 19 C -0.530 4.530 20 H 0.061 0.939 21 C 0.044 3.956 22 N -0.917 5.917 23 Si 0.916 3.084 24 H -0.262 1.262 25 H -0.260 1.260 26 H -0.235 1.235 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.108 0.892 37 H 0.145 0.855 38 H 0.134 0.866 39 H 0.202 0.798 40 H 0.251 0.749 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.698 31.114 1.173 31.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.342 5.342 3 C -0.012 4.012 4 C -0.017 4.017 5 N -0.344 5.344 6 C -0.075 4.075 7 C 0.300 3.700 8 O -0.457 6.457 9 C -0.092 4.092 10 C -0.203 4.203 11 C -0.185 4.185 12 N -0.110 5.110 13 O 0.019 5.981 14 C -0.119 4.119 15 C 0.322 3.678 16 O -0.432 6.432 17 C -0.259 4.259 18 S 0.056 5.944 19 C -0.678 4.678 20 H 0.079 0.921 21 C -0.161 4.161 22 N -0.555 5.555 23 Si 0.738 3.262 24 H -0.186 1.186 25 H -0.184 1.184 26 H -0.159 1.159 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.127 0.873 37 H 0.163 0.837 38 H 0.152 0.848 39 H 0.219 0.781 40 H 0.267 0.733 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.994 31.877 1.710 32.680 hybrid contribution -0.820 -1.662 0.080 1.855 sum 6.174 30.215 1.790 30.891 Atomic orbital electron populations 1.22077 0.77123 1.04439 1.03444 1.47744 1.08372 1.04691 1.73424 1.21744 0.97907 0.84130 0.97397 1.21628 0.97835 0.85347 0.96923 1.47885 1.08599 1.04808 1.73102 1.22171 0.76694 1.05066 1.03567 1.21214 0.87723 0.86070 0.75036 1.90725 1.15997 1.87866 1.51117 1.20030 0.95546 0.84950 1.08657 1.21035 1.05237 1.02002 0.92069 1.25357 0.95965 0.93944 1.03213 1.73869 1.21679 1.23324 0.92158 1.84772 1.51576 1.46306 1.15489 1.26538 0.92380 0.90186 1.02754 1.19993 0.87335 0.85094 0.75352 1.90663 1.14881 1.87333 1.50305 1.23298 1.01902 0.93727 1.07018 1.84612 1.13557 0.98678 1.97566 1.22462 0.94395 0.92591 1.58341 0.92091 1.25594 1.02900 0.94742 0.92866 1.70023 1.36843 0.99535 1.49078 0.85847 0.80041 0.80112 0.80237 1.18640 1.18427 1.15872 0.90880 0.90346 0.89280 0.89249 0.90433 0.90921 0.90851 0.90970 0.91236 0.87336 0.83732 0.84766 0.78146 0.73289 0.87121 0.87204 0.91386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.33 10.24 127.77 1.31 2.64 16 2 N -0.61 -15.00 2.87 -846.75 -2.43 -17.44 16 3 C 0.11 2.34 5.73 86.38 0.50 2.83 16 4 C 0.11 2.10 5.73 86.38 0.50 2.60 16 5 N -0.61 -8.46 2.87 -846.75 -2.43 -10.89 16 6 C 0.07 0.46 10.24 127.77 1.31 1.77 16 7 C 0.51 7.56 7.67 87.66 0.67 8.23 16 8 O -0.58 -13.98 15.61 -3.04 -0.05 -14.03 16 9 C -0.05 -0.32 4.84 29.10 0.14 -0.17 16 10 C -0.20 -2.35 4.82 -19.73 -0.10 -2.45 16 11 C -0.01 -0.10 12.16 85.71 1.04 0.94 16 12 N -0.40 -8.32 12.07 -59.25 -0.72 -9.03 16 13 O 0.08 1.40 11.20 71.65 0.80 2.21 16 14 C -0.04 -0.40 12.26 67.17 0.82 0.42 16 15 C 0.53 17.98 7.69 87.66 0.67 18.65 16 16 O -0.55 -22.14 15.44 -3.04 -0.05 -22.18 16 17 C -0.11 -4.05 4.71 71.23 0.34 -3.72 16 18 S -0.17 -8.45 18.55 -56.49 -1.05 -9.50 16 19 C -0.53 -30.58 10.04 67.95 0.68 -29.90 16 20 H 0.06 3.72 8.03 -2.91 -0.02 3.70 16 21 C 0.04 2.58 5.50 84.86 0.47 3.05 16 22 N -0.92 -55.46 13.97 21.65 0.30 -55.16 16 23 Si 0.92 44.29 27.74 68.60 1.90 46.19 16 24 H -0.26 -12.32 7.11 99.48 0.71 -11.61 16 25 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 26 H -0.23 -11.26 6.74 99.48 0.67 -10.59 16 27 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.08 1.48 6.44 -2.39 -0.02 1.46 16 29 H 0.09 1.41 8.07 -2.39 -0.02 1.39 16 30 H 0.09 1.68 8.07 -2.38 -0.02 1.66 16 31 H 0.08 1.77 7.42 -2.39 -0.02 1.75 16 32 H 0.07 1.61 8.07 -2.38 -0.02 1.59 16 33 H 0.07 1.62 7.42 -2.38 -0.02 1.61 16 34 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.07 0.70 8.07 -2.39 -0.02 0.68 16 36 H 0.11 0.00 6.44 -2.38 -0.02 -0.02 16 37 H 0.14 -0.12 7.40 -2.39 -0.02 -0.14 16 38 H 0.13 0.19 8.11 -2.39 -0.02 0.17 16 39 H 0.20 2.27 8.06 -2.91 -0.02 2.25 16 40 H 0.25 0.43 8.06 -2.91 -0.02 0.41 16 41 H 0.11 3.83 7.40 -2.40 -0.02 3.82 16 42 H 0.11 3.83 8.11 -2.39 -0.02 3.81 16 43 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -83.50 382.68 5.62 -77.88 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: 0.99 Total: 7.06 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: 8.35 Total: 4.89 kcal Atomic # 7 Polarization: -87.24 SS G_CDS: -5.28 Total: -92.52 kcal Atomic # 8 Polarization: -34.71 SS G_CDS: 0.71 Total: -34.00 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.90 Total: 46.19 kcal Atomic # 16 Polarization: -8.45 SS G_CDS: -1.05 Total: -9.50 kcal Total: -83.50 5.62 -77.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285354287.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.197 kcal (2) G-P(sol) polarization free energy of solvation -83.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds