Wall clock time and date at job start Sat Apr 11 2020 06:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35884 * 116.99627 * 2 1 4 4 C 1.36103 * 120.68371 * 359.94922 * 3 2 1 5 5 C 1.40915 * 119.76029 * 179.97438 * 4 3 2 6 6 C 1.34217 * 121.28509 * 0.02562 * 5 4 3 7 7 N 1.37633 * 121.34043 * 0.02562 * 6 5 4 8 8 C 1.38244 * 119.87512 * 359.97438 * 7 6 5 9 9 N 1.31102 * 108.53964 * 180.02562 * 8 7 6 10 10 N 1.40194 * 107.85817 * 0.02562 * 9 8 7 11 11 C 1.46498 * 126.21959 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47235 * 270.02424 * 11 10 9 13 13 C 1.38305 * 119.92910 * 270.25475 * 12 11 10 14 14 C 1.38104 * 120.06272 * 180.25358 * 13 12 11 15 15 C 1.38874 * 119.93265 * 359.47314 * 14 13 12 16 16 O 1.35749 * 120.06890 * 180.29770 * 15 14 13 17 17 C 1.34834 * 117.00013 * 354.46142 * 16 15 14 18 18 H 1.07996 * 120.00021 * 5.05939 * 17 16 15 19 19 C 1.38654 * 119.99707 * 185.05824 * 17 16 15 20 20 N 1.31550 * 120.00182 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99577 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47369 * 59.99976 * 21 19 17 23 23 H 1.48494 * 109.47142 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47275 * 300.00018 * 21 19 17 25 25 C 1.38882 * 119.86301 * 0.27303 * 15 14 13 26 26 C 1.38094 * 119.92975 * 0.02562 * 25 15 14 27 27 C 1.34804 * 131.96551 * 180.34447 * 7 6 5 28 28 O 1.21902 * 126.06045 * 359.95480 * 27 7 6 29 29 H 1.09005 * 109.47057 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47184 * 300.00214 * 1 2 3 31 31 H 1.08998 * 109.47194 * 60.00564 * 1 2 3 32 32 H 1.07996 * 120.11835 * 359.97438 * 4 3 2 33 33 H 1.07992 * 119.35797 * 180.02562 * 5 4 3 34 34 H 1.08004 * 119.32903 * 180.02562 * 6 5 4 35 35 H 1.09006 * 109.47116 * 150.02574 * 11 10 9 36 36 H 1.08998 * 109.47244 * 30.02728 * 11 10 9 37 37 H 1.07990 * 119.96792 * 0.02562 * 13 12 11 38 38 H 1.08000 * 120.02708 * 179.74272 * 14 13 12 39 39 H 0.97006 * 119.99724 * 179.97438 * 20 19 17 40 40 H 1.08005 * 120.03486 * 180.02562 * 25 15 14 41 41 H 1.08006 * 119.96521 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.3182 2.3609 -0.0010 5 6 1.9780 3.6061 -0.0005 6 6 3.3179 3.6849 0.0006 7 7 4.1015 2.5534 0.0006 8 6 3.5081 1.3048 0.0001 9 7 4.4518 0.3948 0.0008 10 7 5.6875 1.0569 0.0024 11 6 7.0087 0.4240 0.0041 12 6 7.4597 0.2064 1.4255 13 6 8.1795 1.1899 2.0793 14 6 8.5986 0.9914 3.3801 15 6 8.2872 -0.1928 4.0354 16 8 8.6926 -0.3884 5.3161 17 6 9.4907 0.5546 5.8563 18 1 9.7126 1.4555 5.3037 19 6 10.0264 0.3676 7.1214 20 7 9.7557 -0.7296 7.7948 21 14 11.1315 1.6744 7.8701 22 1 10.3818 2.9512 7.9832 23 1 11.5713 1.2370 9.2193 24 1 12.3204 1.8735 7.0029 25 6 7.5598 -1.1763 3.3779 26 6 7.1488 -0.9743 2.0751 27 6 5.4387 2.3831 0.0075 28 8 6.2750 3.2699 0.0150 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 0.2390 2.3195 -0.0023 33 1 1.3942 4.5146 -0.0009 34 1 3.7907 4.6559 0.0014 35 1 7.7217 1.0699 -0.5084 36 1 6.9527 -0.5354 -0.5102 37 1 8.4172 2.1125 1.5708 38 1 9.1642 1.7581 3.8887 39 1 10.1309 -0.8606 8.6797 40 1 7.3157 -2.0982 3.8849 41 1 6.5827 -1.7386 1.5633 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307358597.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:32 Heat of formation + Delta-G solvation = 52.779270 kcal Electronic energy + Delta-G solvation = -28327.655691 eV Core-core repulsion = 24177.198933 eV Total energy + Delta-G solvation = -4150.456758 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.98497 -39.85732 -39.08789 -37.78890 -37.13020 -36.55839 -33.67659 -32.46203 -32.07806 -30.22131 -29.99809 -28.75359 -28.01190 -26.34044 -25.21260 -23.48430 -23.25480 -21.98831 -21.82029 -20.52088 -18.85503 -18.06246 -17.93253 -17.60667 -17.24797 -16.91961 -16.24345 -16.00972 -15.84404 -15.13573 -14.82580 -14.62219 -14.48078 -14.43910 -13.65223 -13.60282 -13.45249 -13.26923 -12.86291 -12.67923 -12.63673 -12.29305 -12.16887 -11.91571 -11.90815 -11.68534 -11.59544 -11.32872 -11.03231 -10.85001 -10.67679 -10.46203 -10.38050 -10.26835 -9.37145 -9.23039 -8.87496 -8.20244 -7.63691 -7.28700 -6.49472 -4.07876 0.42658 1.32441 1.42404 2.08143 2.22309 2.44879 2.48960 3.10616 3.12058 3.12961 3.15780 3.21856 3.92147 3.94197 4.31377 4.47623 4.55987 4.60342 4.74682 4.76609 4.91858 5.05732 5.10214 5.20425 5.23558 5.31152 5.37710 5.51303 5.57337 5.72476 5.77008 5.84168 6.01542 6.18289 6.19547 6.39292 6.44526 6.66214 6.77742 6.87473 7.01238 7.20154 7.31716 7.40288 7.45951 7.77830 7.88902 7.95792 8.95830 9.64232 10.68032 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015127 B = 0.002510 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.569530 B =11154.173264 C =11395.520831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.295 6.295 3 C 0.151 3.849 4 C -0.181 4.181 5 C -0.147 4.147 6 C 0.090 3.910 7 N -0.469 5.469 8 C 0.278 3.722 9 N -0.243 5.243 10 N -0.418 5.418 11 C 0.213 3.787 12 C -0.228 4.228 13 C -0.042 4.042 14 C -0.239 4.239 15 C 0.164 3.836 16 O -0.172 6.172 17 C -0.393 4.393 18 H 0.093 0.907 19 C 0.041 3.959 20 N -0.860 5.860 21 Si 0.942 3.058 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.269 1.269 25 C -0.198 4.198 26 C -0.043 4.043 27 C 0.645 3.355 28 O -0.537 6.537 29 H 0.107 0.893 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.148 0.852 33 H 0.153 0.847 34 H 0.167 0.833 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.112 0.888 38 H 0.128 0.872 39 H 0.272 0.728 40 H 0.119 0.881 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.596 5.483 -17.634 26.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.206 6.206 3 C 0.101 3.899 4 C -0.206 4.206 5 C -0.170 4.170 6 C -0.027 4.027 7 N -0.187 5.187 8 C 0.009 3.991 9 N -0.068 5.068 10 N -0.238 5.238 11 C 0.095 3.905 12 C -0.230 4.230 13 C -0.061 4.061 14 C -0.259 4.259 15 C 0.109 3.891 16 O -0.075 6.075 17 C -0.469 4.469 18 H 0.110 0.890 19 C -0.164 4.164 20 N -0.494 5.494 21 Si 0.766 3.234 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.194 1.194 25 C -0.218 4.218 26 C -0.062 4.062 27 C 0.345 3.655 28 O -0.410 6.410 29 H 0.125 0.875 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.166 0.834 33 H 0.170 0.830 34 H 0.184 0.816 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.130 0.870 38 H 0.146 0.854 39 H 0.082 0.918 40 H 0.137 0.863 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -17.363 4.508 -17.232 24.874 hybrid contribution 0.108 1.604 0.548 1.699 sum -17.255 6.112 -16.684 24.768 Atomic orbital electron populations 1.23209 0.77084 1.04758 1.01717 1.86102 1.21856 1.25003 1.87666 1.18196 0.85396 0.85979 1.00357 1.20983 1.00642 0.90869 1.08115 1.20261 0.92148 0.98498 1.06072 1.21429 0.91033 0.89448 1.00795 1.43348 1.07693 1.06769 1.60937 1.21242 0.92564 0.81958 1.03376 1.77734 0.87996 1.17603 1.23427 1.49709 1.05313 1.03220 1.65523 1.20391 0.76008 0.98428 0.95638 1.19346 1.09672 0.97609 0.96381 1.20719 0.94659 0.96842 0.93912 1.21142 1.09070 0.99516 0.96138 1.19454 0.91833 0.92622 0.85150 1.83974 1.57509 1.45862 1.20126 1.21330 1.26059 0.99013 1.00523 0.88969 1.25314 0.97660 0.97862 0.95588 1.70030 1.41906 1.24973 1.12518 0.85763 0.79660 0.79537 0.78406 1.19432 1.20190 1.19380 1.20196 1.06615 0.99789 0.95182 1.20523 0.96352 0.95851 0.93482 1.16570 0.80971 0.85243 0.82675 1.91121 1.47112 1.44597 1.58128 0.87506 0.92059 0.92165 0.83441 0.82959 0.81574 0.88254 0.88196 0.87036 0.85413 0.91845 0.86311 0.86693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.83 101.05 0.99 1.12 16 2 O -0.29 -2.96 10.54 -19.37 -0.20 -3.16 16 3 C 0.15 1.61 6.90 -37.01 -0.26 1.36 16 4 C -0.18 -1.36 9.09 -39.34 -0.36 -1.72 16 5 C -0.15 -1.06 9.92 -39.99 -0.40 -1.45 16 6 C 0.09 0.91 10.86 -16.36 -0.18 0.73 16 7 N -0.47 -6.59 2.93 -65.04 -0.19 -6.78 16 8 C 0.28 3.91 8.05 -153.85 -1.24 2.67 16 9 N -0.24 -3.86 12.62 32.38 0.41 -3.45 16 10 N -0.42 -6.82 3.60 -66.30 -0.24 -7.06 16 11 C 0.21 3.18 6.49 -5.19 -0.03 3.15 16 12 C -0.23 -4.14 5.47 -104.57 -0.57 -4.71 16 13 C -0.04 -0.84 9.69 -39.61 -0.38 -1.23 16 14 C -0.24 -5.46 9.17 -39.40 -0.36 -5.82 16 15 C 0.16 4.09 6.65 -39.11 -0.26 3.83 16 16 O -0.17 -5.00 9.76 0.04 0.00 -5.00 16 17 C -0.39 -11.15 9.49 30.89 0.29 -10.86 16 18 H 0.09 2.43 5.20 -52.49 -0.27 2.16 16 19 C 0.04 1.13 5.49 -17.52 -0.10 1.03 16 20 N -0.86 -25.34 13.67 55.48 0.76 -24.58 16 21 Si 0.94 20.73 29.55 -169.99 -5.02 15.71 16 22 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 23 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 24 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 25 C -0.20 -4.33 9.99 -39.40 -0.39 -4.72 16 26 C -0.04 -0.81 9.69 -39.61 -0.38 -1.19 16 27 C 0.64 10.88 8.70 -86.75 -0.75 10.13 16 28 O -0.54 -10.20 17.87 5.01 0.09 -10.11 16 29 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.22 7.69 -51.93 -0.40 -0.18 16 31 H 0.06 0.18 7.68 -51.93 -0.40 -0.22 16 32 H 0.15 0.61 6.32 -52.49 -0.33 0.28 16 33 H 0.15 0.56 8.06 -52.49 -0.42 0.14 16 34 H 0.17 1.37 8.06 -52.48 -0.42 0.95 16 35 H 0.10 1.36 8.04 -51.93 -0.42 0.94 16 36 H 0.10 1.25 8.08 -51.93 -0.42 0.83 16 37 H 0.11 2.08 8.06 -52.49 -0.42 1.65 16 38 H 0.13 2.92 5.64 -52.49 -0.30 2.62 16 39 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.12 2.49 8.06 -52.48 -0.42 2.06 16 41 H 0.12 1.85 8.06 -52.48 -0.42 1.42 16 LS Contribution 362.76 15.07 5.47 5.47 Total: -1.00 -35.74 362.76 -7.52 -43.26 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -4.21 Total: 3.39 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -4.38 Total: -7.69 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: 0.74 Total: -41.87 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.11 Total: -18.26 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.74 -7.52 -43.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307358597.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.042 kcal (2) G-P(sol) polarization free energy of solvation -35.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds