Wall clock time and date at job start Sat Apr 11 2020 06:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00225 * 2 1 4 4 C 1.53006 * 109.47075 * 89.99694 * 3 2 1 5 5 H 1.09002 * 109.47089 * 304.99833 * 4 3 2 6 6 O 1.42894 * 109.47083 * 65.00240 * 4 3 2 7 7 C 1.53003 * 109.47240 * 185.00310 * 4 3 2 8 8 N 1.46493 * 109.47362 * 179.97438 * 7 4 3 9 9 C 1.34776 * 120.00127 * 179.97438 * 8 7 4 10 10 O 1.21689 * 120.00038 * 0.02562 * 9 8 7 11 11 C 1.46679 * 119.99793 * 179.97438 * 9 8 7 12 12 C 1.37877 * 126.22774 * 180.02562 * 11 9 8 13 13 C 1.39835 * 107.08106 * 179.97438 * 12 11 9 14 14 C 1.35455 * 107.86741 * 0.02562 * 13 12 11 15 15 N 1.35533 * 108.86778 * 359.73012 * 14 13 12 16 16 H 0.97003 * 125.67687 * 180.30449 * 15 14 13 17 17 C 1.34780 * 120.00229 * 179.97438 * 2 1 3 18 18 O 1.21279 * 120.00031 * 180.02562 * 17 2 1 19 19 C 1.50699 * 119.99563 * 0.02562 * 17 2 1 20 20 S 1.81004 * 109.46896 * 179.97438 * 19 17 2 21 21 C 1.76205 * 99.99950 * 180.02562 * 20 19 17 22 22 H 1.07997 * 120.00211 * 359.97438 * 21 20 19 23 23 C 1.38799 * 119.99841 * 179.97438 * 21 20 19 24 24 N 1.31634 * 119.99716 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 120.00102 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47028 * 89.99849 * 25 23 21 27 27 H 1.48506 * 109.47024 * 210.00175 * 25 23 21 28 28 H 1.48500 * 109.47007 * 329.99819 * 25 23 21 29 29 H 1.09002 * 109.47391 * 270.00005 * 1 2 3 30 30 H 1.09001 * 109.46813 * 150.00061 * 1 2 3 31 31 H 1.09004 * 109.47041 * 30.00189 * 1 2 3 32 32 H 1.08993 * 109.47560 * 209.99542 * 3 2 1 33 33 H 1.09000 * 109.47209 * 330.00227 * 3 2 1 34 34 H 0.96704 * 113.99882 * 60.00134 * 6 4 3 35 35 H 1.08996 * 109.46853 * 300.00182 * 7 4 3 36 36 H 1.09008 * 109.47004 * 59.99607 * 7 4 3 37 37 H 0.97002 * 119.99885 * 359.97438 * 8 7 4 38 38 H 1.07998 * 126.46278 * 0.03608 * 12 11 9 39 39 H 1.08002 * 126.06869 * 179.97438 * 13 12 11 40 40 H 1.08002 * 125.56627 * 180.02562 * 14 13 12 41 41 H 1.09004 * 109.47017 * 299.99442 * 19 17 2 42 42 H 1.09002 * 109.47507 * 59.99434 * 19 17 2 43 43 H 0.97001 * 119.99678 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4426 5 1 1.5061 1.7550 1.9815 6 8 3.3209 0.7725 2.0815 7 6 3.1060 3.0938 1.4444 8 7 3.3496 3.5170 2.8256 9 6 3.9223 4.7116 3.0733 10 8 4.2366 5.4389 2.1497 11 6 4.1656 5.1355 4.4563 12 6 4.7395 6.3240 4.8553 13 6 4.7772 6.3131 6.2531 14 6 4.2382 5.1439 6.6742 15 7 3.8575 4.4219 5.5922 16 1 3.4391 3.5470 5.6146 17 6 2.1389 -1.1672 0.0005 18 8 3.3517 -1.1672 0.0010 19 6 1.3854 -2.4723 0.0005 20 16 2.5616 -3.8480 0.0005 21 6 1.4415 -5.2082 -0.0003 22 1 0.3762 -5.0306 -0.0001 23 6 1.9283 -6.5081 -0.0010 24 7 1.0914 -7.5242 -0.0011 25 14 3.7708 -6.8154 -0.0019 26 1 4.2596 -6.8974 1.3979 27 1 4.0592 -8.0926 -0.7027 28 1 4.4582 -5.7006 -0.7018 29 1 -0.3634 0.0000 1.0277 30 1 -0.3633 -0.8900 -0.5138 31 1 -0.3633 0.8900 -0.5139 32 1 3.1499 1.1384 -0.5137 33 1 1.6085 2.0284 -0.5138 34 1 4.1836 0.6811 1.6543 35 1 4.0523 3.0493 0.9054 36 1 2.4436 3.8093 0.9570 37 1 3.0987 2.9374 3.5618 38 1 5.0924 7.1148 4.2100 39 1 5.1676 7.0972 6.8848 40 1 4.1254 4.8391 7.7042 41 1 0.7585 -2.5298 0.8904 42 1 0.7590 -2.5302 -0.8896 43 1 1.4316 -8.4326 -0.0020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338435058.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:02 Heat of formation + Delta-G solvation = -72.148892 kcal Electronic energy + Delta-G solvation = -26341.824087 eV Core-core repulsion = 22321.393988 eV Total energy + Delta-G solvation = -4020.430098 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.64313 -40.00508 -39.34806 -37.60440 -35.28438 -34.64437 -32.46121 -31.64899 -31.19323 -29.98184 -28.89081 -27.17950 -25.73374 -25.35535 -22.96276 -22.22341 -20.94804 -20.45238 -19.51712 -19.38252 -17.75180 -17.25376 -16.85456 -16.36525 -16.15005 -16.02181 -15.52638 -15.26376 -15.10275 -14.94382 -14.27421 -14.17689 -14.11445 -13.83344 -13.79906 -13.22400 -13.16321 -12.98357 -12.83763 -12.77127 -12.68009 -12.51516 -12.13938 -11.88186 -11.45740 -11.28038 -11.03176 -10.66110 -10.61514 -10.44444 -9.88176 -9.58566 -9.52440 -9.42278 -9.02541 -8.66053 -8.64472 -8.51385 -6.93820 -6.31252 -4.02848 1.08093 2.35813 2.51994 2.67619 2.76464 2.93665 3.04885 3.15734 3.31098 3.48097 3.56205 4.13556 4.29781 4.30825 4.44162 4.53362 4.64916 4.66186 4.75163 4.89646 4.95214 5.01446 5.04883 5.07823 5.21186 5.29105 5.30046 5.36100 5.57279 5.66197 5.71386 5.75675 5.76961 5.89855 5.97760 6.27693 6.41940 6.49951 6.89479 7.09381 7.33863 7.46725 7.77771 7.91747 8.38839 8.39781 9.14964 10.77948 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018602 B = 0.002000 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.893186 B =13997.135098 C =14740.850736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.619 5.619 3 C 0.090 3.910 4 C 0.079 3.921 5 H 0.103 0.897 6 O -0.547 6.547 7 C 0.090 3.910 8 N -0.724 5.724 9 C 0.589 3.411 10 O -0.531 6.531 11 C -0.059 4.059 12 C -0.106 4.106 13 C -0.213 4.213 14 C 0.025 3.975 15 N -0.540 5.540 16 H 0.417 0.583 17 C 0.539 3.461 18 O -0.514 6.514 19 C -0.120 4.120 20 S -0.142 6.142 21 C -0.521 4.521 22 H 0.088 0.912 23 C 0.095 3.905 24 N -0.880 5.880 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.236 1.236 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.384 0.616 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.400 0.600 38 H 0.148 0.852 39 H 0.144 0.856 40 H 0.172 0.828 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.512 26.615 9.402 28.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.354 5.354 3 C -0.035 4.035 4 C 0.018 3.982 5 H 0.121 0.879 6 O -0.354 6.354 7 C -0.035 4.035 8 N -0.376 5.376 9 C 0.376 3.624 10 O -0.407 6.407 11 C -0.172 4.172 12 C -0.133 4.133 13 C -0.238 4.238 14 C -0.112 4.112 15 N -0.136 5.136 16 H 0.255 0.745 17 C 0.327 3.673 18 O -0.388 6.388 19 C -0.271 4.271 20 S 0.085 5.915 21 C -0.669 4.669 22 H 0.106 0.894 23 C -0.113 4.113 24 N -0.517 5.517 25 Si 0.682 3.318 26 H -0.192 1.192 27 H -0.200 1.200 28 H -0.160 1.160 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.233 0.767 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.234 0.766 38 H 0.165 0.835 39 H 0.162 0.838 40 H 0.189 0.811 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.911 26.698 9.038 28.251 hybrid contribution -0.839 -1.013 0.137 1.322 sum 1.071 25.686 9.175 27.296 Atomic orbital electron populations 1.21834 0.79362 1.03421 1.01929 1.47665 1.06785 1.05191 1.75776 1.21990 0.99366 0.86090 0.96052 1.22588 0.94330 0.86399 0.94877 0.87896 1.86577 1.30016 1.62484 1.56293 1.22065 1.01932 0.96390 0.83107 1.45721 1.63426 1.19250 1.09166 1.17079 0.77344 0.81075 0.86854 1.90852 1.51960 1.53627 1.44269 1.20414 1.14140 0.96719 0.85917 1.21358 1.00701 0.96049 0.95150 1.20938 1.08885 0.99122 0.94823 1.22098 1.03242 0.93724 0.92097 1.42070 1.47808 1.17965 1.05727 0.74544 1.20213 0.87885 0.84445 0.74748 1.90640 1.13699 1.86715 1.47754 1.23299 1.03101 0.95250 1.05444 1.84768 1.11898 0.97461 1.97398 1.22312 0.94868 0.90931 1.58789 0.89444 1.24718 0.98550 0.94882 0.93189 1.69941 1.34791 0.98878 1.48054 0.86727 0.85338 0.79806 0.79917 1.19226 1.19952 1.15951 0.92670 0.90360 0.91234 0.89056 0.89556 0.76702 0.90518 0.90193 0.76614 0.83460 0.83808 0.81076 0.88643 0.88658 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.68 10.29 59.85 0.62 1.30 16 2 N -0.62 -7.36 2.86 -181.57 -0.52 -7.87 16 3 C 0.09 0.82 5.16 -4.04 -0.02 0.80 16 4 C 0.08 0.66 3.30 -26.73 -0.09 0.57 16 5 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 6 O -0.55 -6.21 11.95 -43.04 -0.51 -6.72 16 7 C 0.09 0.71 5.34 -4.04 -0.02 0.68 16 8 N -0.72 -5.87 5.44 -61.62 -0.34 -6.21 16 9 C 0.59 6.27 7.79 -12.85 -0.10 6.17 16 10 O -0.53 -7.51 16.88 5.20 0.09 -7.42 16 11 C -0.06 -0.55 7.06 -81.98 -0.58 -1.12 16 12 C -0.11 -0.98 10.65 -39.12 -0.42 -1.39 16 13 C -0.21 -1.52 10.81 -39.98 -0.43 -1.95 16 14 C 0.02 0.14 11.89 -16.91 -0.20 -0.06 16 15 N -0.54 -3.34 5.99 -9.39 -0.06 -3.40 16 16 H 0.42 1.54 8.19 -40.82 -0.33 1.21 16 17 C 0.54 9.11 7.32 -10.98 -0.08 9.03 16 18 O -0.51 -10.14 14.42 -2.25 -0.03 -10.17 16 19 C -0.12 -2.28 4.71 36.00 0.17 -2.11 16 20 S -0.14 -3.53 18.55 -107.50 -1.99 -5.53 16 21 C -0.52 -14.86 10.04 30.94 0.31 -14.55 16 22 H 0.09 2.60 8.03 -52.49 -0.42 2.17 16 23 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 24 N -0.88 -26.34 13.97 55.49 0.78 -25.57 16 25 Si 0.86 21.63 27.74 -169.99 -4.71 16.92 16 26 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 28 H -0.24 -5.92 6.74 56.52 0.38 -5.54 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.73 6.44 -51.93 -0.33 0.40 16 31 H 0.07 0.42 7.89 -51.93 -0.41 0.01 16 32 H 0.09 0.96 7.42 -51.93 -0.39 0.58 16 33 H 0.09 0.55 7.89 -51.93 -0.41 0.14 16 34 H 0.38 4.21 8.75 45.56 0.40 4.61 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 37 H 0.40 2.57 7.48 -40.82 -0.31 2.27 16 38 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 39 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.17 0.41 8.06 -52.49 -0.42 -0.01 16 41 H 0.10 1.72 8.11 -51.91 -0.42 1.30 16 42 H 0.10 1.68 7.40 -51.91 -0.38 1.30 16 43 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 381.24 15.07 5.75 5.75 Total: -1.00 -37.47 381.24 -7.62 -45.08 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -5.12 Total: 5.12 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -0.94 Total: 0.03 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: -0.14 Total: -43.05 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.46 Total: -24.32 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.71 Total: 16.92 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -1.99 Total: -5.53 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.47 -7.62 -45.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338435058.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.064 kcal (2) G-P(sol) polarization free energy of solvation -37.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds