Wall clock time and date at job start Sat Apr 11 2020 06:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46496 * 120.00099 * 2 1 4 4 C 1.52997 * 109.47294 * 89.99713 * 3 2 1 5 5 H 1.09001 * 109.46832 * 60.00150 * 4 3 2 6 6 O 1.42895 * 109.47503 * 299.99916 * 4 3 2 7 7 C 1.53006 * 109.47127 * 179.97438 * 4 3 2 8 8 N 1.46493 * 109.47189 * 185.00095 * 7 4 3 9 9 C 1.34775 * 120.00236 * 180.02562 * 8 7 4 10 10 O 1.21691 * 119.99811 * 0.02562 * 9 8 7 11 11 C 1.46675 * 120.00294 * 180.02562 * 9 8 7 12 12 C 1.37867 * 126.23346 * 180.02562 * 11 9 8 13 13 C 1.39833 * 107.08818 * 179.97438 * 12 11 9 14 14 C 1.35458 * 107.86524 * 0.02562 * 13 12 11 15 15 N 1.35535 * 108.86497 * 359.72918 * 14 13 12 16 16 H 0.97006 * 125.67247 * 180.30346 * 15 14 13 17 17 C 1.34779 * 119.99671 * 179.97438 * 2 1 3 18 18 O 1.21289 * 119.99834 * 180.02562 * 17 2 1 19 19 C 1.50696 * 120.00404 * 359.97438 * 17 2 1 20 20 S 1.80998 * 109.47275 * 180.02562 * 19 17 2 21 21 C 1.76204 * 100.00116 * 180.02562 * 20 19 17 22 22 H 1.07993 * 119.99560 * 359.97438 * 21 20 19 23 23 C 1.38796 * 120.00259 * 180.02562 * 21 20 19 24 24 N 1.31638 * 119.99624 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00224 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46945 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47146 * 119.99953 * 25 23 21 28 28 H 1.48504 * 109.46957 * 239.99676 * 25 23 21 29 29 H 1.09003 * 109.46953 * 90.00231 * 1 2 3 30 30 H 1.09003 * 109.47246 * 210.00399 * 1 2 3 31 31 H 1.08997 * 109.47278 * 330.00222 * 1 2 3 32 32 H 1.09001 * 109.47054 * 329.99445 * 3 2 1 33 33 H 1.09004 * 109.47074 * 209.99959 * 3 2 1 34 34 H 0.96696 * 113.99976 * 300.00825 * 6 4 3 35 35 H 1.08997 * 109.47395 * 305.00572 * 7 4 3 36 36 H 1.09004 * 109.46579 * 64.99848 * 7 4 3 37 37 H 0.97005 * 119.99996 * 359.97438 * 8 7 4 38 38 H 1.08005 * 126.46166 * 0.03421 * 12 11 9 39 39 H 1.07997 * 126.07417 * 179.97438 * 13 12 11 40 40 H 1.07992 * 125.57060 * 180.02562 * 14 13 12 41 41 H 1.08999 * 109.47009 * 299.99913 * 19 17 2 42 42 H 1.09000 * 109.46926 * 59.99842 * 19 17 2 43 43 H 0.97002 * 119.99643 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4425 5 1 3.0416 0.9508 1.9563 6 8 1.2039 1.8814 2.1161 7 6 3.2181 3.0352 1.4424 8 7 3.5665 3.3979 2.8183 9 6 4.2476 4.5347 3.0637 10 8 4.5728 5.2600 2.1423 11 6 4.5969 4.8976 4.4413 12 6 5.2866 6.0237 4.8374 13 6 5.3963 5.9696 6.2303 14 6 4.7857 4.8361 6.6515 15 7 4.2909 4.1787 5.5745 16 1 3.8037 3.3402 5.5983 17 6 2.1389 -1.1673 0.0005 18 8 3.3517 -1.1673 0.0010 19 6 1.3854 -2.4723 0.0017 20 16 2.5615 -3.8481 0.0029 21 6 1.4414 -5.2083 0.0034 22 1 0.3763 -5.0305 0.0033 23 6 1.9281 -6.5081 0.0048 24 7 3.2266 -6.7247 0.0054 25 14 0.7407 -7.9501 0.0046 26 1 -0.6547 -7.4421 0.0033 27 1 0.9677 -8.7780 -1.2070 28 1 0.9652 -8.7763 1.2179 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6085 2.0283 -0.5139 33 1 3.1500 1.1383 -0.5138 34 1 0.6268 2.5440 1.7125 35 1 4.1288 2.9285 0.8531 36 1 2.5935 3.8157 1.0079 37 1 3.3063 2.8202 3.5529 38 1 5.6692 6.8017 4.1933 39 1 5.8823 6.7011 6.8589 40 1 4.7022 4.5119 7.6782 41 1 0.7591 -2.5295 0.8920 42 1 0.7584 -2.5306 -0.8880 43 1 3.5667 -7.6331 0.0061 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338435059.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:05 Heat of formation + Delta-G solvation = -72.855270 kcal Electronic energy + Delta-G solvation = -26204.254856 eV Core-core repulsion = 22183.794127 eV Total energy + Delta-G solvation = -4020.460729 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.60856 -39.97635 -39.30295 -37.76582 -35.15850 -34.65594 -32.46237 -31.68166 -31.20651 -29.92189 -28.84226 -27.03768 -25.67451 -25.22191 -22.95567 -22.29392 -20.91450 -20.41735 -19.42385 -19.37006 -17.76367 -17.17593 -16.77841 -16.35830 -16.32366 -15.88383 -15.50752 -15.25815 -15.10696 -14.83660 -14.25455 -14.19232 -14.08541 -13.89305 -13.83369 -13.10888 -13.04748 -12.95622 -12.74044 -12.64638 -12.61103 -12.46298 -12.04641 -11.86239 -11.48439 -11.10135 -11.05384 -10.80080 -10.75553 -10.45062 -9.83435 -9.54972 -9.45857 -9.38883 -9.10725 -8.61036 -8.58117 -8.26649 -6.54157 -6.25254 -3.96063 1.11703 2.39228 2.58883 2.72768 2.91363 2.98489 3.08494 3.18811 3.23165 3.28354 3.54859 3.98791 4.16789 4.29620 4.48600 4.61216 4.68622 4.72734 4.87639 4.98552 5.07705 5.08668 5.10111 5.12030 5.32316 5.38894 5.49841 5.59398 5.65596 5.69584 5.73216 5.80167 5.86418 5.93790 6.09341 6.31129 6.49636 6.53392 6.92824 7.11870 7.21221 7.42313 7.56606 7.81183 8.31973 8.45937 9.20264 10.82219 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017777 B = 0.001917 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.654394 B =14603.916842 C =15351.377219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.616 5.616 3 C 0.091 3.909 4 C 0.078 3.922 5 H 0.113 0.887 6 O -0.552 6.552 7 C 0.092 3.908 8 N -0.724 5.724 9 C 0.589 3.411 10 O -0.531 6.531 11 C -0.059 4.059 12 C -0.106 4.106 13 C -0.214 4.214 14 C 0.025 3.975 15 N -0.540 5.540 16 H 0.417 0.583 17 C 0.533 3.467 18 O -0.517 6.517 19 C -0.150 4.150 20 S -0.063 6.063 21 C -0.535 4.535 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.372 0.628 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.399 0.601 38 H 0.148 0.852 39 H 0.144 0.856 40 H 0.172 0.828 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.256 24.326 9.590 26.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.352 5.352 3 C -0.034 4.034 4 C 0.017 3.983 5 H 0.131 0.869 6 O -0.357 6.357 7 C -0.033 4.033 8 N -0.376 5.376 9 C 0.377 3.623 10 O -0.407 6.407 11 C -0.172 4.172 12 C -0.133 4.133 13 C -0.238 4.238 14 C -0.112 4.112 15 N -0.136 5.136 16 H 0.255 0.745 17 C 0.321 3.679 18 O -0.391 6.391 19 C -0.300 4.300 20 S 0.164 5.836 21 C -0.683 4.683 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.205 1.205 28 H -0.206 1.206 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.116 0.884 34 H 0.219 0.781 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.233 0.767 38 H 0.165 0.835 39 H 0.162 0.838 40 H 0.189 0.811 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.934 24.092 9.221 25.869 hybrid contribution -2.773 -1.207 0.089 3.026 sum -4.707 22.885 9.310 25.151 Atomic orbital electron populations 1.21775 0.79282 1.03483 1.01360 1.47684 1.06955 1.04992 1.75563 1.21900 0.99534 0.86249 0.95681 1.22701 0.85188 0.95619 0.94753 0.86932 1.86656 1.28833 1.63557 1.56667 1.22042 1.01033 0.96839 0.83344 1.45739 1.58104 1.24163 1.09579 1.17076 0.77638 0.80824 0.86792 1.90852 1.54287 1.51338 1.44212 1.20413 1.12446 0.98186 0.86113 1.21353 0.99888 0.96813 0.95201 1.20935 1.08022 0.99892 0.94931 1.22095 1.01615 0.95227 0.92224 1.42074 1.44332 1.21088 1.06080 0.74545 1.20403 0.87940 0.84644 0.74892 1.90699 1.13718 1.86822 1.47868 1.23546 1.04561 0.97120 1.04769 1.85391 1.08085 0.93402 1.96710 1.22894 0.94327 0.92170 1.58888 0.90875 1.25001 0.95694 0.98410 0.94526 1.70032 1.11731 1.21588 1.46903 0.86109 0.80328 0.81093 0.77923 1.19609 1.20540 1.20564 0.92942 0.90652 0.91154 0.90067 0.88441 0.78108 0.89783 0.90688 0.76677 0.83459 0.83816 0.81084 0.89188 0.89248 0.92220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.79 9.98 59.85 0.60 1.39 16 2 N -0.62 -7.83 2.80 -181.57 -0.51 -8.34 16 3 C 0.09 0.90 5.10 -4.05 -0.02 0.88 16 4 C 0.08 0.70 3.27 -26.73 -0.09 0.61 16 5 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 6 O -0.55 -4.39 12.01 -35.23 -0.42 -4.81 16 7 C 0.09 0.78 5.31 -4.04 -0.02 0.75 16 8 N -0.72 -6.28 5.50 -61.62 -0.34 -6.62 16 9 C 0.59 6.55 7.79 -12.86 -0.10 6.45 16 10 O -0.53 -7.73 16.88 5.20 0.09 -7.64 16 11 C -0.06 -0.57 7.06 -81.98 -0.58 -1.15 16 12 C -0.11 -1.01 10.65 -39.12 -0.42 -1.43 16 13 C -0.21 -1.59 10.81 -39.98 -0.43 -2.02 16 14 C 0.02 0.15 11.89 -16.91 -0.20 -0.05 16 15 N -0.54 -3.56 5.99 -9.39 -0.06 -3.62 16 16 H 0.42 1.71 8.19 -40.82 -0.33 1.38 16 17 C 0.53 9.65 7.69 -10.99 -0.08 9.56 16 18 O -0.52 -11.22 15.44 5.55 0.09 -11.13 16 19 C -0.15 -2.96 4.71 36.00 0.17 -2.80 16 20 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 21 C -0.53 -15.06 9.50 30.94 0.29 -14.77 16 22 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 23 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 24 N -0.87 -25.95 13.22 55.49 0.73 -25.21 16 25 Si 0.92 21.19 29.55 -169.99 -5.02 16.17 16 26 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.77 6.44 -51.93 -0.33 0.44 16 31 H 0.07 0.48 6.88 -51.93 -0.36 0.12 16 32 H 0.08 0.55 8.07 -51.93 -0.42 0.13 16 33 H 0.10 1.13 7.42 -51.93 -0.39 0.75 16 34 H 0.37 1.66 8.79 45.56 0.40 2.07 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.40 2.78 7.60 -40.82 -0.31 2.47 16 38 H 0.15 1.37 8.06 -52.48 -0.42 0.95 16 39 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.17 0.47 8.06 -52.49 -0.42 0.04 16 41 H 0.09 1.67 7.40 -51.92 -0.38 1.28 16 42 H 0.09 1.65 8.11 -51.92 -0.42 1.23 16 43 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 384.30 15.07 5.79 5.79 Total: -1.00 -38.27 384.30 -7.89 -46.16 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -5.05 Total: 3.73 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -0.98 Total: -0.60 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: -0.17 Total: -43.78 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -0.25 Total: -23.58 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -38.27 -7.89 -46.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338435059.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.698 kcal (2) G-P(sol) polarization free energy of solvation -38.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds