Wall clock time and date at job start Sat Apr 11 2020 06:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34635 * 117.00332 * 2 1 4 4 O 1.21386 * 119.99550 * 359.97438 * 3 2 1 5 5 C 1.48467 * 120.00394 * 179.97438 * 3 2 1 6 6 N 1.32462 * 119.15299 * 359.97438 * 5 3 2 7 7 C 1.32246 * 120.94126 * 179.72650 * 6 5 3 8 8 C 1.38446 * 119.24806 * 0.56961 * 7 6 5 9 9 C 1.39675 * 118.44585 * 359.44785 * 8 7 6 10 10 N 1.39067 * 120.49277 * 180.29387 * 9 8 7 11 11 C 1.34783 * 120.00232 * 174.84969 * 10 9 8 12 12 O 1.21260 * 119.99866 * 5.18208 * 11 10 9 13 13 C 1.50705 * 119.99982 * 185.18123 * 11 10 9 14 14 H 1.08997 * 109.47000 * 299.99751 * 13 11 10 15 15 C 1.50702 * 109.46897 * 60.00014 * 13 11 10 16 16 H 1.07999 * 120.00020 * 35.01134 * 15 13 11 17 17 C 1.37878 * 119.99568 * 215.01620 * 15 13 11 18 18 N 1.31513 * 120.00301 * 5.02048 * 17 15 13 19 19 Si 1.86803 * 119.99650 * 185.02987 * 17 15 13 20 20 H 1.48499 * 109.47444 * 359.97438 * 19 17 15 21 21 H 1.48508 * 109.46999 * 119.99574 * 19 17 15 22 22 H 1.48502 * 109.47019 * 239.99357 * 19 17 15 23 23 C 1.50695 * 109.46749 * 179.97438 * 13 11 10 24 24 C 1.38235 * 120.00184 * 294.40828 * 23 13 11 25 25 C 1.38239 * 120.00071 * 179.78726 * 24 23 13 26 26 C 1.38244 * 119.99657 * 0.44770 * 25 24 23 27 27 C 1.38234 * 119.99827 * 359.80818 * 26 25 24 28 28 C 1.38229 * 120.00162 * 359.97438 * 27 26 25 29 29 N 1.32440 * 119.15259 * 179.97438 * 5 3 2 30 30 H 1.09001 * 109.47074 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47009 * 299.99887 * 1 2 3 32 32 H 1.09001 * 109.46723 * 60.00492 * 1 2 3 33 33 H 1.07998 * 120.38052 * 180.31571 * 7 6 5 34 34 H 1.07998 * 120.77310 * 179.71323 * 8 7 6 35 35 H 0.97005 * 120.00337 * 354.84537 * 10 9 8 36 36 H 0.96997 * 120.00004 * 179.97438 * 18 17 15 37 37 H 1.07999 * 119.99948 * 0.02562 * 24 23 13 38 38 H 1.07991 * 120.00294 * 180.27435 * 25 24 23 39 39 H 1.08000 * 119.99671 * 179.83359 * 26 25 24 40 40 H 1.08001 * 119.99694 * 180.02562 * 27 26 25 41 41 H 1.08001 * 120.00140 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4022 2.2176 -0.0005 5 6 3.5459 1.2773 0.0006 6 7 4.2509 0.1558 0.0016 7 6 5.5730 0.1838 -0.0033 8 6 6.2238 1.4058 0.0025 9 6 5.4525 2.5703 0.0015 10 7 6.0620 3.8203 0.0009 11 6 5.3124 4.9355 -0.1048 12 8 4.1025 4.8550 -0.1049 13 6 5.9781 6.2824 -0.2230 14 1 6.5941 6.4618 0.6581 15 6 6.8447 6.3079 -1.4556 16 1 6.5369 5.7755 -2.3434 17 6 8.0308 7.0110 -1.4499 18 7 8.4545 7.5769 -0.3409 19 14 9.0357 7.1601 -3.0175 20 1 8.3466 6.4391 -4.1178 21 1 9.1802 8.5933 -3.3785 22 1 10.3796 6.5659 -2.8024 23 6 4.9252 7.3555 -0.3274 24 6 4.0954 7.4046 -1.4319 25 6 3.1267 8.3863 -1.5256 26 6 2.9940 9.3246 -0.5191 27 6 3.8273 9.2787 0.5829 28 6 4.7930 8.2942 0.6786 29 7 4.1297 2.4661 0.0000 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 6.1388 -0.7361 -0.0075 34 1 7.3025 1.4573 0.0033 35 1 7.0266 3.8897 0.0768 36 1 9.2890 8.0712 -0.3369 37 1 4.2014 6.6736 -2.2198 38 1 2.4756 8.4220 -2.3864 39 1 2.2390 10.0932 -0.5936 40 1 3.7233 10.0114 1.3694 41 1 5.4443 8.2586 1.5394 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361538505.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:20 Heat of formation + Delta-G solvation = -22.472637 kcal Electronic energy + Delta-G solvation = -28837.496581 eV Core-core repulsion = 24683.776655 eV Total energy + Delta-G solvation = -4153.719926 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.34094 -40.09480 -39.20612 -37.86933 -36.45433 -35.00636 -33.82443 -32.99290 -31.42693 -31.04568 -29.98535 -28.17227 -27.53663 -25.42335 -24.68164 -23.61951 -21.74275 -21.63175 -21.12680 -19.73339 -18.63885 -17.70352 -16.94473 -16.61126 -16.52397 -16.47675 -15.88436 -15.77058 -15.47106 -15.09363 -14.59731 -14.34575 -14.10790 -14.03748 -13.64509 -13.54141 -13.11200 -13.06868 -12.52799 -12.39256 -12.21521 -11.80852 -11.72830 -11.29351 -11.20291 -11.15909 -11.05432 -10.83716 -10.52759 -10.48995 -10.34962 -10.16765 -10.13676 -9.57291 -9.47758 -8.87576 -8.56283 -8.54505 -7.98901 -7.69773 -6.41311 -4.48177 0.39793 1.18421 2.18657 2.31770 2.34500 2.34739 3.10439 3.19500 3.21889 3.26837 3.46555 3.95744 3.99289 4.18617 4.35406 4.66274 4.76639 4.94799 4.97992 5.00931 5.09207 5.17133 5.29913 5.41470 5.69123 5.74386 5.84544 5.98698 6.03192 6.13457 6.17539 6.43806 6.51391 6.72751 6.77068 6.86588 6.91762 7.07367 7.32567 7.37832 7.49803 7.51276 7.63395 7.78483 7.85264 7.99333 8.16978 8.56377 8.91228 9.18675 10.66925 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010592 B = 0.003816 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2642.830945 B = 7335.369776 C = 9251.115066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.336 6.336 3 C 0.534 3.466 4 O -0.456 6.456 5 C 0.324 3.676 6 N -0.508 5.508 7 C 0.161 3.839 8 C -0.245 4.245 9 C 0.416 3.584 10 N -0.643 5.643 11 C 0.510 3.490 12 O -0.478 6.478 13 C 0.054 3.946 14 H 0.097 0.903 15 C -0.521 4.521 16 H 0.064 0.936 17 C 0.077 3.923 18 N -0.877 5.877 19 Si 0.899 3.101 20 H -0.270 1.270 21 H -0.280 1.280 22 H -0.281 1.281 23 C -0.017 4.017 24 C -0.083 4.083 25 C -0.132 4.132 26 C -0.145 4.145 27 C -0.131 4.131 28 C -0.117 4.117 29 N -0.461 5.461 30 H 0.105 0.895 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.178 0.822 34 H 0.157 0.843 35 H 0.429 0.571 36 H 0.269 0.731 37 H 0.111 0.889 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.359 -11.758 1.947 12.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.251 6.251 3 C 0.372 3.628 4 O -0.337 6.337 5 C 0.054 3.946 6 N -0.229 5.229 7 C -0.002 4.002 8 C -0.272 4.272 9 C 0.174 3.826 10 N -0.289 5.289 11 C 0.299 3.701 12 O -0.346 6.346 13 C 0.033 3.967 14 H 0.115 0.885 15 C -0.558 4.558 16 H 0.082 0.918 17 C -0.128 4.128 18 N -0.512 5.512 19 Si 0.726 3.274 20 H -0.194 1.194 21 H -0.205 1.205 22 H -0.207 1.207 23 C -0.019 4.019 24 C -0.101 4.101 25 C -0.151 4.151 26 C -0.163 4.163 27 C -0.150 4.150 28 C -0.136 4.136 29 N -0.185 5.185 30 H 0.123 0.877 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.195 0.805 34 H 0.174 0.826 35 H 0.268 0.732 36 H 0.079 0.921 37 H 0.129 0.871 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.334 -11.220 2.012 13.040 hybrid contribution 2.006 0.441 -0.858 2.226 sum -4.327 -10.779 1.154 11.672 Atomic orbital electron populations 1.23353 0.75794 1.03863 1.02834 1.86619 1.23225 1.31264 1.84037 1.19966 0.86390 0.81966 0.74488 1.90929 1.64981 1.35922 1.41822 1.21106 0.92634 0.84425 0.96460 1.68333 1.08478 1.30792 1.15309 1.23006 0.89383 0.97641 0.90213 1.22635 1.02967 0.92965 1.08638 1.18857 0.87910 0.87263 0.88523 1.44092 1.12357 1.02351 1.70115 1.22352 0.87574 0.86540 0.73637 1.90790 1.13861 1.86367 1.43630 1.18162 0.92444 0.83995 1.02139 0.88497 1.20720 1.03940 1.33939 0.97196 0.91781 1.24956 0.97003 0.94334 0.96534 1.69870 1.21981 1.33245 1.26123 0.86414 0.79599 0.78418 0.82996 1.19442 1.20549 1.20650 1.19951 0.93366 0.96030 0.92505 1.20827 0.94402 0.97235 0.97671 1.20964 0.99126 0.96274 0.98686 1.20828 1.00383 0.99701 0.95407 1.20904 0.97004 0.99000 0.98043 1.20981 0.98016 0.95764 0.98806 1.68134 1.09902 1.25989 1.14478 0.87714 0.91672 0.91664 0.80539 0.82565 0.73230 0.92137 0.87120 0.87479 0.87593 0.87438 0.86883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.56 101.05 1.07 1.41 16 2 O -0.34 -4.69 10.36 -40.32 -0.42 -5.11 16 3 C 0.53 9.26 7.99 34.95 0.28 9.54 16 4 O -0.46 -9.21 16.65 -19.18 -0.32 -9.53 16 5 C 0.32 5.71 7.59 -157.12 -1.19 4.52 16 6 N -0.51 -7.45 10.15 -11.20 -0.11 -7.56 16 7 C 0.16 1.81 11.29 -17.30 -0.20 1.61 16 8 C -0.25 -2.94 10.05 -38.97 -0.39 -3.33 16 9 C 0.42 7.05 7.46 -154.50 -1.15 5.90 16 10 N -0.64 -11.46 5.26 -11.28 -0.06 -11.52 16 11 C 0.51 11.13 7.00 -10.98 -0.08 11.06 16 12 O -0.48 -11.86 13.71 5.57 0.08 -11.79 16 13 C 0.05 1.22 2.45 -94.07 -0.23 0.99 16 14 H 0.10 2.29 6.99 -51.93 -0.36 1.93 16 15 C -0.52 -12.39 7.55 -34.44 -0.26 -12.65 16 16 H 0.06 1.56 7.82 -52.49 -0.41 1.15 16 17 C 0.08 1.86 5.45 -17.82 -0.10 1.76 16 18 N -0.88 -21.86 12.77 55.43 0.71 -21.16 16 19 Si 0.90 19.12 29.54 -169.99 -5.02 14.09 16 20 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 21 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 23 C -0.02 -0.40 4.31 -104.63 -0.45 -0.85 16 24 C -0.08 -1.87 8.28 -39.58 -0.33 -2.20 16 25 C -0.13 -2.64 10.05 -39.58 -0.40 -3.04 16 26 C -0.15 -2.71 10.05 -39.58 -0.40 -3.10 16 27 C -0.13 -2.52 10.05 -39.59 -0.40 -2.92 16 28 C -0.12 -2.52 9.67 -39.59 -0.38 -2.91 16 29 N -0.46 -9.14 7.74 -10.30 -0.08 -9.22 16 30 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.18 1.16 8.06 -52.49 -0.42 0.73 16 34 H 0.16 1.29 8.06 -52.49 -0.42 0.87 16 35 H 0.43 6.51 8.69 -40.82 -0.35 6.15 16 36 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 37 H 0.11 2.54 7.91 -52.49 -0.42 2.12 16 38 H 0.11 1.85 8.06 -52.49 -0.42 1.42 16 39 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 40 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 41 H 0.11 2.32 7.95 -52.49 -0.42 1.90 16 LS Contribution 369.66 15.07 5.57 5.57 Total: -1.00 -32.68 369.66 -8.74 -41.42 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -4.48 Total: 9.01 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: -4.60 Total: 5.80 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: 0.45 Total: -49.46 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.66 Total: -26.43 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.09 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.68 -8.74 -41.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361538505.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.943 kcal (2) G-P(sol) polarization free energy of solvation -32.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds