Wall clock time and date at job start Sat Apr 11 2020 06:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34635 * 117.00332 * 2 1 4 4 O 1.21386 * 119.99550 * 359.97438 * 3 2 1 5 5 C 1.48467 * 120.00394 * 179.97438 * 3 2 1 6 6 N 1.32462 * 119.15299 * 359.97438 * 5 3 2 7 7 C 1.32246 * 120.94126 * 179.72650 * 6 5 3 8 8 C 1.38446 * 119.24806 * 0.56961 * 7 6 5 9 9 C 1.39675 * 118.44585 * 359.44785 * 8 7 6 10 10 N 1.39067 * 120.49277 * 180.29387 * 9 8 7 11 11 C 1.34783 * 120.00232 * 174.84969 * 10 9 8 12 12 O 1.21260 * 119.99866 * 5.18208 * 11 10 9 13 13 C 1.50705 * 119.99982 * 185.18123 * 11 10 9 14 14 H 1.08997 * 109.47000 * 299.99751 * 13 11 10 15 15 C 1.50702 * 109.46897 * 60.00014 * 13 11 10 16 16 H 1.07999 * 120.00020 * 35.01134 * 15 13 11 17 17 C 1.37878 * 119.99568 * 215.01620 * 15 13 11 18 18 N 1.31513 * 120.00301 * 5.02048 * 17 15 13 19 19 Si 1.86803 * 119.99650 * 185.02987 * 17 15 13 20 20 H 1.48499 * 109.47444 * 359.97438 * 19 17 15 21 21 H 1.48508 * 109.46999 * 119.99574 * 19 17 15 22 22 H 1.48502 * 109.47019 * 239.99357 * 19 17 15 23 23 C 1.50695 * 109.46749 * 179.97438 * 13 11 10 24 24 C 1.38235 * 120.00184 * 294.40828 * 23 13 11 25 25 C 1.38239 * 120.00071 * 179.78726 * 24 23 13 26 26 C 1.38244 * 119.99657 * 0.44770 * 25 24 23 27 27 C 1.38234 * 119.99827 * 359.80818 * 26 25 24 28 28 C 1.38229 * 120.00162 * 359.97438 * 27 26 25 29 29 N 1.32440 * 119.15259 * 179.97438 * 5 3 2 30 30 H 1.09001 * 109.47074 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47009 * 299.99887 * 1 2 3 32 32 H 1.09001 * 109.46723 * 60.00492 * 1 2 3 33 33 H 1.07998 * 120.38052 * 180.31571 * 7 6 5 34 34 H 1.07998 * 120.77310 * 179.71323 * 8 7 6 35 35 H 0.97005 * 120.00337 * 354.84537 * 10 9 8 36 36 H 0.96997 * 120.00004 * 179.97438 * 18 17 15 37 37 H 1.07999 * 119.99948 * 0.02562 * 24 23 13 38 38 H 1.07991 * 120.00294 * 180.27435 * 25 24 23 39 39 H 1.08000 * 119.99671 * 179.83359 * 26 25 24 40 40 H 1.08001 * 119.99694 * 180.02562 * 27 26 25 41 41 H 1.08001 * 120.00140 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4022 2.2176 -0.0005 5 6 3.5459 1.2773 0.0006 6 7 4.2509 0.1558 0.0016 7 6 5.5730 0.1838 -0.0033 8 6 6.2238 1.4058 0.0025 9 6 5.4525 2.5703 0.0015 10 7 6.0620 3.8203 0.0009 11 6 5.3124 4.9355 -0.1048 12 8 4.1025 4.8550 -0.1049 13 6 5.9781 6.2824 -0.2230 14 1 6.5941 6.4618 0.6581 15 6 6.8447 6.3079 -1.4556 16 1 6.5369 5.7755 -2.3434 17 6 8.0308 7.0110 -1.4499 18 7 8.4545 7.5769 -0.3409 19 14 9.0357 7.1601 -3.0175 20 1 8.3466 6.4391 -4.1178 21 1 9.1802 8.5933 -3.3785 22 1 10.3796 6.5659 -2.8024 23 6 4.9252 7.3555 -0.3274 24 6 4.0954 7.4046 -1.4319 25 6 3.1267 8.3863 -1.5256 26 6 2.9940 9.3246 -0.5191 27 6 3.8273 9.2787 0.5829 28 6 4.7930 8.2942 0.6786 29 7 4.1297 2.4661 0.0000 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 6.1388 -0.7361 -0.0075 34 1 7.3025 1.4573 0.0033 35 1 7.0266 3.8897 0.0768 36 1 9.2890 8.0712 -0.3369 37 1 4.2014 6.6736 -2.2198 38 1 2.4756 8.4220 -2.3864 39 1 2.2390 10.0932 -0.5936 40 1 3.7233 10.0114 1.3694 41 1 5.4443 8.2586 1.5394 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361538505.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:20 Heat of formation + Delta-G solvation = -42.205526 kcal Electronic energy + Delta-G solvation = -28838.352263 eV Core-core repulsion = 24683.776655 eV Total energy + Delta-G solvation = -4154.575608 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.57762 -41.40432 -40.71655 -39.42395 -37.68446 -36.44207 -35.60537 -34.23809 -33.01785 -32.44288 -31.58464 -29.32331 -29.01973 -26.54097 -26.27513 -25.07319 -23.28128 -22.94503 -22.59853 -21.29137 -19.91105 -19.08251 -18.61800 -18.02111 -17.82388 -17.72082 -17.38588 -17.18608 -16.53921 -16.43568 -16.28976 -15.84661 -15.66014 -15.20120 -15.13952 -14.77954 -14.57698 -14.30010 -14.10284 -14.03626 -13.49768 -13.35867 -13.11791 -12.89872 -12.84745 -12.63719 -12.40611 -12.21552 -12.00429 -11.90243 -11.75779 -11.72690 -11.37647 -11.32362 -10.99548 -10.70119 -10.06213 -9.86060 -9.60327 -9.32938 -8.25873 -6.37547 -0.79346 0.03344 0.70428 0.73546 1.06628 1.09969 1.40708 1.46218 1.54892 1.81325 1.96575 2.39941 2.75561 2.89750 3.02504 3.17197 3.26828 3.56511 3.93772 4.10923 4.18943 4.25419 4.25878 4.29891 4.31026 4.38314 4.46218 4.49031 4.66796 4.82352 4.90557 5.00749 5.03037 5.05554 5.30236 5.39016 5.46329 5.60872 5.65679 5.74009 5.77298 5.87662 6.15640 6.25931 6.36345 6.48015 6.68646 6.91961 7.28462 7.35189 8.82443 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010592 B = 0.003816 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2642.830945 B = 7335.369776 C = 9251.115066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.332 6.332 3 C 0.535 3.465 4 O -0.501 6.501 5 C 0.298 3.702 6 N -0.501 5.501 7 C 0.170 3.830 8 C -0.210 4.210 9 C 0.380 3.620 10 N -0.638 5.638 11 C 0.513 3.487 12 O -0.517 6.517 13 C 0.058 3.942 14 H 0.081 0.919 15 C -0.521 4.521 16 H 0.050 0.950 17 C 0.043 3.957 18 N -0.901 5.901 19 Si 0.954 3.046 20 H -0.273 1.273 21 H -0.287 1.287 22 H -0.267 1.267 23 C -0.044 4.044 24 C -0.110 4.110 25 C -0.137 4.137 26 C -0.141 4.141 27 C -0.129 4.129 28 C -0.140 4.140 29 N -0.509 5.509 30 H 0.147 0.853 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.237 0.763 34 H 0.203 0.797 35 H 0.439 0.561 36 H 0.270 0.730 37 H 0.091 0.909 38 H 0.133 0.867 39 H 0.147 0.853 40 H 0.142 0.858 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.560 -13.230 1.747 13.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.246 6.246 3 C 0.375 3.625 4 O -0.385 6.385 5 C 0.028 3.972 6 N -0.222 5.222 7 C 0.006 3.994 8 C -0.236 4.236 9 C 0.141 3.859 10 N -0.286 5.286 11 C 0.301 3.699 12 O -0.389 6.389 13 C 0.037 3.963 14 H 0.099 0.901 15 C -0.558 4.558 16 H 0.069 0.931 17 C -0.160 4.160 18 N -0.537 5.537 19 Si 0.779 3.221 20 H -0.198 1.198 21 H -0.213 1.213 22 H -0.192 1.192 23 C -0.045 4.045 24 C -0.128 4.128 25 C -0.155 4.155 26 C -0.159 4.159 27 C -0.146 4.146 28 C -0.159 4.159 29 N -0.234 5.234 30 H 0.165 0.835 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.253 0.747 34 H 0.220 0.780 35 H 0.280 0.720 36 H 0.080 0.920 37 H 0.109 0.891 38 H 0.150 0.850 39 H 0.165 0.835 40 H 0.160 0.840 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.507 -12.768 1.818 14.023 hybrid contribution 1.712 0.754 -0.765 2.021 sum -3.795 -12.014 1.053 12.643 Atomic orbital electron populations 1.23762 0.73462 1.06572 1.02848 1.86612 1.25486 1.29379 1.83140 1.20203 0.86703 0.82229 0.73357 1.90892 1.65930 1.37418 1.44284 1.21103 0.92958 0.84660 0.98460 1.68408 1.10234 1.29265 1.14336 1.24045 0.88215 0.99403 0.87711 1.23149 1.04846 0.91050 1.04548 1.19223 0.87914 0.87978 0.90795 1.43721 1.12468 1.02225 1.70148 1.22109 0.87153 0.87359 0.73233 1.90763 1.15279 1.87090 1.45752 1.18041 0.92305 0.85030 1.00969 0.90086 1.20698 1.04236 1.33849 0.97022 0.93124 1.25511 0.97728 0.94039 0.98721 1.69951 1.22413 1.33904 1.27415 0.85574 0.78858 0.77732 0.79924 1.19798 1.21276 1.19184 1.20107 0.94180 0.96718 0.93476 1.20832 0.96147 0.98308 0.97524 1.21319 0.98456 0.95619 1.00067 1.21288 1.00580 0.99780 0.94245 1.21324 0.95702 0.98556 0.99067 1.21172 0.99327 0.96640 0.98724 1.67907 1.11986 1.27899 1.15588 0.83525 0.91663 0.91788 0.74672 0.78013 0.72006 0.92010 0.89084 0.84959 0.83514 0.84007 0.86951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.56 113.37 1.20 1.69 16 2 O -0.33 -9.20 10.36 -55.44 -0.57 -9.77 16 3 C 0.54 19.27 7.99 70.55 0.56 19.83 16 4 O -0.50 -21.54 16.65 20.20 0.34 -21.20 16 5 C 0.30 10.65 7.59 137.67 1.05 11.70 16 6 N -0.50 -13.78 10.15 -189.36 -1.92 -15.71 16 7 C 0.17 3.13 11.29 84.68 0.96 4.08 16 8 C -0.21 -4.39 10.05 22.67 0.23 -4.17 16 9 C 0.38 12.91 7.46 133.08 0.99 13.90 16 10 N -0.64 -23.43 5.26 -307.99 -1.62 -25.05 16 11 C 0.51 23.69 7.00 87.66 0.61 24.30 16 12 O -0.52 -27.42 13.71 -2.97 -0.04 -27.46 16 13 C 0.06 2.78 2.45 -13.03 -0.03 2.74 16 14 H 0.08 4.06 6.99 -2.39 -0.02 4.05 16 15 C -0.52 -25.69 7.55 25.60 0.19 -25.50 16 16 H 0.05 2.58 7.82 -2.91 -0.02 2.56 16 17 C 0.04 2.10 5.45 84.66 0.46 2.56 16 18 N -0.90 -45.64 12.77 21.45 0.27 -45.37 16 19 Si 0.95 39.40 29.54 68.60 2.03 41.43 16 20 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 21 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 22 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 23 C -0.04 -2.11 4.31 -19.87 -0.09 -2.20 16 24 C -0.11 -5.16 8.28 22.27 0.18 -4.98 16 25 C -0.14 -5.42 10.05 22.27 0.22 -5.20 16 26 C -0.14 -5.01 10.05 22.27 0.22 -4.78 16 27 C -0.13 -4.79 10.05 22.27 0.22 -4.57 16 28 C -0.14 -6.19 9.67 22.27 0.22 -5.98 16 29 N -0.51 -20.94 7.74 -186.49 -1.44 -22.39 16 30 H 0.15 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.24 1.53 8.06 -2.91 -0.02 1.51 16 34 H 0.20 2.31 8.06 -2.91 -0.02 2.28 16 35 H 0.44 13.49 8.69 -92.70 -0.81 12.69 16 36 H 0.27 13.02 8.31 -92.71 -0.77 12.25 16 37 H 0.09 4.49 7.91 -2.91 -0.02 4.47 16 38 H 0.13 4.44 8.06 -2.92 -0.02 4.41 16 39 H 0.15 3.99 8.06 -2.91 -0.02 3.96 16 40 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 41 H 0.11 4.80 7.95 -2.91 -0.02 4.78 16 Total: -1.00 -77.26 369.66 4.52 -72.74 By element: Atomic # 1 Polarization: 29.04 SS G_CDS: 0.28 Total: 29.33 kcal Atomic # 6 Polarization: 16.25 SS G_CDS: 7.20 Total: 23.45 kcal Atomic # 7 Polarization: -103.80 SS G_CDS: -4.71 Total: -108.51 kcal Atomic # 8 Polarization: -58.16 SS G_CDS: -0.28 Total: -58.43 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.03 Total: 41.43 kcal Total: -77.26 4.52 -72.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361538505.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.531 kcal (2) G-P(sol) polarization free energy of solvation -77.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds