Wall clock time and date at job start Sat Apr 11 2020 06:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 117.00193 * 2 1 4 4 O 1.20828 * 120.00082 * 359.97438 * 3 2 1 5 5 C 1.50704 * 120.00190 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.46431 * 299.99883 * 5 3 2 7 7 C 1.53002 * 109.47217 * 59.99309 * 5 3 2 8 8 C 1.52994 * 109.47292 * 185.00219 * 7 5 3 9 9 F 1.39893 * 109.47580 * 174.99831 * 8 7 5 10 10 F 1.39900 * 109.47217 * 295.00341 * 8 7 5 11 11 N 1.46496 * 109.47337 * 179.97438 * 5 3 2 12 12 C 1.34768 * 119.99990 * 154.99845 * 11 5 3 13 13 O 1.21283 * 120.00362 * 359.97438 * 12 11 5 14 14 C 1.50704 * 119.99898 * 179.97438 * 12 11 5 15 15 H 1.08997 * 109.47162 * 299.99891 * 14 12 11 16 16 C 1.50700 * 109.46946 * 60.00291 * 14 12 11 17 17 H 1.08006 * 119.99718 * 235.33276 * 16 14 12 18 18 C 1.37873 * 120.00405 * 55.33079 * 16 14 12 19 19 N 1.31515 * 119.99752 * 1.97657 * 18 16 14 20 20 Si 1.86800 * 120.00319 * 181.98256 * 18 16 14 21 21 H 1.48504 * 109.47154 * 59.99416 * 20 18 16 22 22 H 1.48497 * 109.47364 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46777 * 299.99829 * 20 18 16 24 24 C 1.50698 * 109.47525 * 179.97438 * 14 12 11 25 25 C 1.38236 * 120.00427 * 227.07615 * 24 14 12 26 26 C 1.38230 * 120.00009 * 179.78547 * 25 24 14 27 27 C 1.38237 * 120.00166 * 0.43846 * 26 25 24 28 28 C 1.38233 * 119.99886 * 359.81045 * 27 26 25 29 29 C 1.38233 * 119.99954 * 359.97438 * 28 27 26 30 30 H 1.09003 * 109.47000 * 300.00825 * 1 2 3 31 31 H 1.08999 * 109.46762 * 60.00230 * 1 2 3 32 32 H 1.08998 * 109.47169 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47048 * 305.00509 * 7 5 3 34 34 H 1.09000 * 109.46976 * 64.99903 * 7 5 3 35 35 H 1.09006 * 109.46890 * 54.99667 * 8 7 5 36 36 H 0.97006 * 119.99612 * 334.99750 * 11 5 3 37 37 H 0.97002 * 120.00009 * 180.02562 * 19 18 16 38 38 H 1.07999 * 119.99591 * 359.97438 * 25 24 14 39 39 H 1.08005 * 119.99992 * 180.26680 * 26 25 24 40 40 H 1.08003 * 120.00350 * 179.83378 * 27 26 25 41 41 H 1.08001 * 119.99964 * 179.97438 * 28 27 26 42 42 H 1.08009 * 119.99860 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5664 1.2749 -0.0006 6 1 3.9564 0.7805 0.8892 7 6 4.1130 0.5814 -1.2501 8 6 5.6414 0.5515 -1.1894 9 9 6.1370 -0.1814 -2.2731 10 9 6.1360 1.8589 -1.2454 11 7 3.9818 2.6797 -0.0011 12 6 5.1874 3.0260 0.4917 13 8 5.9283 2.1748 0.9359 14 6 5.6150 4.4712 0.4906 15 1 5.6320 4.8443 -0.5334 16 6 4.6417 5.2835 1.3053 17 1 4.1512 6.1392 0.8650 18 6 4.3773 4.9346 2.6127 19 7 5.0035 3.9163 3.1610 20 14 3.1295 5.9080 3.6052 21 1 1.8038 5.8371 2.9398 22 1 3.0293 5.3359 4.9719 23 1 3.5641 7.3253 3.6931 24 6 6.9922 4.5881 1.0912 25 6 7.2503 5.5543 2.0455 26 6 8.5124 5.6586 2.5996 27 6 9.5188 4.8026 2.1929 28 6 9.2620 3.8398 1.2348 29 6 7.9987 3.7326 0.6840 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 3.7311 -0.4385 -1.2960 34 1 3.7952 1.1285 -2.1376 35 1 5.9589 0.0826 -0.2580 36 1 3.3891 3.3606 -0.3561 37 1 4.8172 3.6705 4.0806 38 1 6.4651 6.2256 2.3604 39 1 8.7130 6.4107 3.3484 40 1 10.5056 4.8858 2.6238 41 1 10.0484 3.1713 0.9167 42 1 7.7982 2.9805 -0.0649 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362601419.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:28 Heat of formation + Delta-G solvation = -186.741523 kcal Electronic energy + Delta-G solvation = -31750.179773 eV Core-core repulsion = 27138.647428 eV Total energy + Delta-G solvation = -4611.532345 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.56749 -46.56297 -40.61713 -38.94277 -37.58970 -36.48061 -34.82312 -33.58792 -31.25572 -30.69788 -29.61729 -28.38497 -27.34387 -25.88687 -23.87193 -22.47436 -21.33952 -21.09954 -20.17088 -19.45701 -17.81056 -17.32891 -17.07945 -16.88119 -16.53875 -16.36581 -15.67692 -15.51147 -15.08996 -15.04870 -14.68864 -14.18805 -13.71887 -13.58939 -13.56866 -13.38231 -13.29080 -12.84959 -12.67056 -12.37128 -12.31255 -12.15159 -12.05177 -11.95631 -11.76028 -11.35161 -11.22668 -10.91897 -10.87263 -10.82135 -10.74871 -10.44247 -10.24375 -9.98334 -9.63401 -9.36002 -8.69431 -8.36184 -8.28829 -7.63848 -7.35576 -6.12676 -4.27792 2.16360 2.47974 2.62674 2.67214 3.24242 3.30235 3.32832 3.93281 4.05767 4.15782 4.33880 4.56186 4.67668 4.85995 4.97177 5.00186 5.07825 5.08103 5.15384 5.31154 5.40431 5.48596 5.73015 5.82687 5.90197 6.04546 6.10639 6.26628 6.43202 6.58284 6.74888 6.84299 6.94873 7.18198 7.24029 7.27376 7.61254 7.69081 7.71400 7.71699 7.83178 8.21509 8.32108 8.51625 8.77526 9.38718 9.59992 10.87605 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010181 B = 0.005790 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.524767 B = 4834.376847 C = 7147.551487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.359 6.359 3 C 0.461 3.539 4 O -0.487 6.487 5 C 0.165 3.835 6 H 0.126 0.874 7 C -0.178 4.178 8 C 0.273 3.727 9 F -0.216 7.216 10 F -0.185 7.185 11 N -0.725 5.725 12 C 0.575 3.425 13 O -0.549 6.549 14 C 0.062 3.938 15 H 0.058 0.942 16 C -0.539 4.539 17 H 0.066 0.934 18 C 0.076 3.924 19 N -0.844 5.844 20 Si 0.886 3.114 21 H -0.275 1.275 22 H -0.288 1.288 23 H -0.274 1.274 24 C -0.013 4.013 25 C -0.065 4.065 26 C -0.149 4.149 27 C -0.145 4.145 28 C -0.146 4.146 29 C -0.100 4.100 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.091 0.909 35 H 0.118 0.882 36 H 0.408 0.592 37 H 0.264 0.736 38 H 0.127 0.873 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.655 -7.590 -6.988 10.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.275 6.275 3 C 0.302 3.698 4 O -0.372 6.372 5 C 0.056 3.944 6 H 0.144 0.856 7 C -0.218 4.218 8 C 0.219 3.781 9 F -0.198 7.198 10 F -0.167 7.167 11 N -0.382 5.382 12 C 0.367 3.633 13 O -0.426 6.426 14 C 0.041 3.959 15 H 0.076 0.924 16 C -0.577 4.577 17 H 0.085 0.915 18 C -0.132 4.132 19 N -0.477 5.477 20 Si 0.713 3.287 21 H -0.200 1.200 22 H -0.214 1.214 23 H -0.200 1.200 24 C -0.014 4.014 25 C -0.083 4.083 26 C -0.167 4.167 27 C -0.163 4.163 28 C -0.164 4.164 29 C -0.118 4.118 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.119 0.881 33 H 0.125 0.875 34 H 0.110 0.890 35 H 0.136 0.864 36 H 0.244 0.756 37 H 0.075 0.925 38 H 0.145 0.855 39 H 0.118 0.882 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.295 -7.996 -6.488 10.812 hybrid contribution -1.312 0.738 0.743 1.679 sum -4.607 -7.258 -5.745 10.339 Atomic orbital electron populations 1.23267 0.76285 1.03575 1.02697 1.86485 1.23451 1.33252 1.84332 1.23743 0.91817 0.81613 0.72630 1.90704 1.66492 1.36148 1.43904 1.19971 0.86044 0.88276 1.00076 0.85611 1.23080 0.94834 1.03918 0.99956 1.21688 0.91177 0.76687 0.88500 1.92943 1.89450 1.77624 1.59761 1.92959 1.89079 1.37848 1.96766 1.45856 1.20685 1.04696 1.66932 1.20895 0.78532 0.91820 0.72065 1.90481 1.53259 1.52417 1.46455 1.17801 0.91671 0.89755 0.96685 0.92408 1.20690 1.26038 1.14214 0.96764 0.91540 1.25019 0.95421 0.95052 0.97721 1.70053 1.38699 1.25092 1.13883 0.86734 0.82248 0.80441 0.79262 1.19988 1.21363 1.19952 1.19758 0.93894 0.93078 0.94653 1.21147 0.94882 0.98119 0.94165 1.20970 0.94363 1.00234 1.01143 1.20766 0.98122 0.97846 0.99559 1.20826 0.96934 0.99318 0.99351 1.21099 0.92349 0.98085 1.00242 0.91803 0.91866 0.88095 0.87456 0.89039 0.86425 0.75613 0.92545 0.85524 0.88160 0.88339 0.88219 0.86782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.52 10.37 -39.26 -0.41 -4.92 16 3 C 0.46 7.07 7.32 36.01 0.26 7.33 16 4 O -0.49 -8.82 15.59 -18.75 -0.29 -9.11 16 5 C 0.16 2.59 2.77 -69.08 -0.19 2.40 16 6 H 0.13 2.10 7.58 -51.93 -0.39 1.71 16 7 C -0.18 -2.28 5.15 -26.73 -0.14 -2.42 16 8 C 0.27 4.08 4.47 37.15 0.17 4.24 16 9 F -0.22 -3.18 17.34 2.25 0.04 -3.14 16 10 F -0.19 -3.41 11.12 2.25 0.03 -3.38 16 11 N -0.73 -13.88 4.62 -54.93 -0.25 -14.13 16 12 C 0.58 12.70 2.97 -10.99 -0.03 12.66 16 13 O -0.55 -12.89 10.60 5.56 0.06 -12.83 16 14 C 0.06 1.44 2.78 -94.07 -0.26 1.18 16 15 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 16 C -0.54 -13.22 7.11 -34.44 -0.24 -13.47 16 17 H 0.07 1.60 7.81 -52.48 -0.41 1.19 16 18 C 0.08 1.91 4.00 -17.82 -0.07 1.84 16 19 N -0.84 -22.56 10.89 55.43 0.60 -21.96 16 20 Si 0.89 20.24 29.54 -169.99 -5.02 15.22 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 C -0.01 -0.30 4.51 -104.62 -0.47 -0.78 16 25 C -0.07 -1.52 8.20 -39.59 -0.32 -1.85 16 26 C -0.15 -3.13 10.05 -39.58 -0.40 -3.53 16 27 C -0.14 -2.88 10.05 -39.58 -0.40 -3.27 16 28 C -0.15 -2.99 10.05 -39.59 -0.40 -3.39 16 29 C -0.10 -2.23 8.21 -39.58 -0.33 -2.56 16 30 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 31 H 0.06 0.58 8.13 -51.93 -0.42 0.15 16 32 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.11 1.08 7.99 -51.93 -0.42 0.66 16 34 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.12 1.74 7.57 -51.93 -0.39 1.34 16 36 H 0.41 7.83 7.68 -40.82 -0.31 7.52 16 37 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.13 3.08 6.03 -52.49 -0.32 2.76 16 39 H 0.10 1.86 8.06 -52.48 -0.42 1.44 16 40 H 0.10 1.66 8.06 -52.48 -0.42 1.24 16 41 H 0.10 1.78 8.06 -52.49 -0.42 1.35 16 42 H 0.11 2.53 5.77 -52.48 -0.30 2.23 16 LS Contribution 353.17 15.07 5.32 5.32 Total: -1.00 -30.10 353.17 -6.74 -36.84 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -5.06 Total: 12.28 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -1.76 Total: -0.19 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: 0.35 Total: -36.09 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.64 Total: -26.87 kcal Atomic # 9 Polarization: -6.59 SS G_CDS: 0.06 Total: -6.52 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.10 -6.74 -36.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362601419.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.897 kcal (2) G-P(sol) polarization free energy of solvation -30.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds