Wall clock time and date at job start Sat Apr 11 2020 06:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 117.00193 * 2 1 4 4 O 1.20828 * 120.00082 * 359.97438 * 3 2 1 5 5 C 1.50704 * 120.00190 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.46431 * 299.99883 * 5 3 2 7 7 C 1.53002 * 109.47217 * 59.99309 * 5 3 2 8 8 C 1.52994 * 109.47292 * 185.00219 * 7 5 3 9 9 F 1.39893 * 109.47580 * 174.99831 * 8 7 5 10 10 F 1.39900 * 109.47217 * 295.00341 * 8 7 5 11 11 N 1.46496 * 109.47337 * 179.97438 * 5 3 2 12 12 C 1.34768 * 119.99990 * 154.99845 * 11 5 3 13 13 O 1.21283 * 120.00362 * 359.97438 * 12 11 5 14 14 C 1.50704 * 119.99898 * 179.97438 * 12 11 5 15 15 H 1.08997 * 109.47162 * 299.99891 * 14 12 11 16 16 C 1.50700 * 109.46946 * 60.00291 * 14 12 11 17 17 H 1.08006 * 119.99718 * 235.33276 * 16 14 12 18 18 C 1.37873 * 120.00405 * 55.33079 * 16 14 12 19 19 N 1.31515 * 119.99752 * 1.97657 * 18 16 14 20 20 Si 1.86800 * 120.00319 * 181.98256 * 18 16 14 21 21 H 1.48504 * 109.47154 * 59.99416 * 20 18 16 22 22 H 1.48497 * 109.47364 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46777 * 299.99829 * 20 18 16 24 24 C 1.50698 * 109.47525 * 179.97438 * 14 12 11 25 25 C 1.38236 * 120.00427 * 227.07615 * 24 14 12 26 26 C 1.38230 * 120.00009 * 179.78547 * 25 24 14 27 27 C 1.38237 * 120.00166 * 0.43846 * 26 25 24 28 28 C 1.38233 * 119.99886 * 359.81045 * 27 26 25 29 29 C 1.38233 * 119.99954 * 359.97438 * 28 27 26 30 30 H 1.09003 * 109.47000 * 300.00825 * 1 2 3 31 31 H 1.08999 * 109.46762 * 60.00230 * 1 2 3 32 32 H 1.08998 * 109.47169 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47048 * 305.00509 * 7 5 3 34 34 H 1.09000 * 109.46976 * 64.99903 * 7 5 3 35 35 H 1.09006 * 109.46890 * 54.99667 * 8 7 5 36 36 H 0.97006 * 119.99612 * 334.99750 * 11 5 3 37 37 H 0.97002 * 120.00009 * 180.02562 * 19 18 16 38 38 H 1.07999 * 119.99591 * 359.97438 * 25 24 14 39 39 H 1.08005 * 119.99992 * 180.26680 * 26 25 24 40 40 H 1.08003 * 120.00350 * 179.83378 * 27 26 25 41 41 H 1.08001 * 119.99964 * 179.97438 * 28 27 26 42 42 H 1.08009 * 119.99860 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5664 1.2749 -0.0006 6 1 3.9564 0.7805 0.8892 7 6 4.1130 0.5814 -1.2501 8 6 5.6414 0.5515 -1.1894 9 9 6.1370 -0.1814 -2.2731 10 9 6.1360 1.8589 -1.2454 11 7 3.9818 2.6797 -0.0011 12 6 5.1874 3.0260 0.4917 13 8 5.9283 2.1748 0.9359 14 6 5.6150 4.4712 0.4906 15 1 5.6320 4.8443 -0.5334 16 6 4.6417 5.2835 1.3053 17 1 4.1512 6.1392 0.8650 18 6 4.3773 4.9346 2.6127 19 7 5.0035 3.9163 3.1610 20 14 3.1295 5.9080 3.6052 21 1 1.8038 5.8371 2.9398 22 1 3.0293 5.3359 4.9719 23 1 3.5641 7.3253 3.6931 24 6 6.9922 4.5881 1.0912 25 6 7.2503 5.5543 2.0455 26 6 8.5124 5.6586 2.5996 27 6 9.5188 4.8026 2.1929 28 6 9.2620 3.8398 1.2348 29 6 7.9987 3.7326 0.6840 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 3.7311 -0.4385 -1.2960 34 1 3.7952 1.1285 -2.1376 35 1 5.9589 0.0826 -0.2580 36 1 3.3891 3.3606 -0.3561 37 1 4.8172 3.6705 4.0806 38 1 6.4651 6.2256 2.3604 39 1 8.7130 6.4107 3.3484 40 1 10.5056 4.8858 2.6238 41 1 10.0484 3.1713 0.9167 42 1 7.7982 2.9805 -0.0649 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362601419.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:28 Heat of formation + Delta-G solvation = -203.612801 kcal Electronic energy + Delta-G solvation = -31750.911366 eV Core-core repulsion = 27138.647428 eV Total energy + Delta-G solvation = -4612.263939 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.80707 -47.82661 -41.83587 -40.56932 -39.15470 -37.68595 -36.23139 -35.42509 -32.81858 -32.33849 -31.29347 -29.44077 -28.93268 -27.13409 -25.67274 -23.65976 -22.92805 -22.59705 -21.59928 -21.05807 -19.24924 -18.58274 -18.38116 -18.25003 -18.01141 -17.57394 -17.05751 -16.93197 -16.80470 -16.61572 -16.12768 -15.80717 -15.30171 -15.10560 -14.87271 -14.56171 -14.50128 -14.29306 -14.15505 -13.90276 -13.85305 -13.57402 -13.47465 -13.18792 -12.98961 -12.90893 -12.79698 -12.69751 -12.53499 -12.23645 -12.03819 -11.86134 -11.73142 -11.51444 -11.34678 -11.14237 -10.61528 -10.12226 -9.83660 -9.31922 -9.05346 -8.07268 -6.24619 0.93174 0.95039 0.98057 1.38290 1.41635 1.43290 1.47431 2.36609 2.50408 2.59411 2.92561 3.20427 3.37111 3.39467 3.52592 3.72906 3.85319 4.06754 4.29443 4.30860 4.33130 4.39285 4.40959 4.53153 4.62598 4.69345 4.73313 4.74931 4.87538 5.07335 5.12231 5.17856 5.21575 5.51966 5.58689 5.70636 5.74896 5.95461 5.98814 6.03012 6.48043 6.54012 6.57875 6.74470 6.99376 7.43007 7.92573 8.91089 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010181 B = 0.005790 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.524767 B = 4834.376847 C = 7147.551487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.351 6.351 3 C 0.470 3.530 4 O -0.520 6.520 5 C 0.162 3.838 6 H 0.117 0.883 7 C -0.163 4.163 8 C 0.269 3.731 9 F -0.214 7.214 10 F -0.207 7.207 11 N -0.726 5.726 12 C 0.580 3.420 13 O -0.567 6.567 14 C 0.050 3.950 15 H 0.059 0.941 16 C -0.537 4.537 17 H 0.064 0.936 18 C 0.045 3.955 19 N -0.867 5.867 20 Si 0.932 3.068 21 H -0.277 1.277 22 H -0.293 1.293 23 H -0.268 1.268 24 C -0.032 4.032 25 C -0.089 4.089 26 C -0.154 4.154 27 C -0.141 4.141 28 C -0.148 4.148 29 C -0.114 4.114 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.140 0.860 33 H 0.143 0.857 34 H 0.099 0.901 35 H 0.118 0.882 36 H 0.406 0.594 37 H 0.256 0.744 38 H 0.108 0.892 39 H 0.123 0.877 40 H 0.136 0.864 41 H 0.128 0.872 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.610 -8.676 -7.249 11.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.266 6.266 3 C 0.313 3.687 4 O -0.408 6.408 5 C 0.054 3.946 6 H 0.135 0.865 7 C -0.202 4.202 8 C 0.216 3.784 9 F -0.195 7.195 10 F -0.188 7.188 11 N -0.381 5.381 12 C 0.371 3.629 13 O -0.445 6.445 14 C 0.029 3.971 15 H 0.077 0.923 16 C -0.575 4.575 17 H 0.082 0.918 18 C -0.159 4.159 19 N -0.502 5.502 20 Si 0.759 3.241 21 H -0.203 1.203 22 H -0.219 1.219 23 H -0.193 1.193 24 C -0.033 4.033 25 C -0.107 4.107 26 C -0.172 4.172 27 C -0.159 4.159 28 C -0.166 4.166 29 C -0.132 4.132 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.158 0.842 33 H 0.161 0.839 34 H 0.118 0.882 35 H 0.135 0.865 36 H 0.241 0.759 37 H 0.065 0.935 38 H 0.126 0.874 39 H 0.141 0.859 40 H 0.154 0.846 41 H 0.146 0.854 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.273 -9.098 -6.772 11.804 hybrid contribution -1.337 1.032 0.773 1.857 sum -4.610 -8.066 -5.999 11.059 Atomic orbital electron populations 1.23638 0.74189 1.06128 1.02605 1.86471 1.25337 1.31305 1.83522 1.23517 0.91422 0.81961 0.71850 1.90696 1.67044 1.37371 1.45663 1.20091 0.86881 0.86334 1.01250 0.86532 1.22997 0.93049 1.05658 0.98491 1.21862 0.92396 0.75629 0.88546 1.92943 1.89560 1.77387 1.59615 1.92915 1.89535 1.39520 1.96837 1.45719 1.19762 1.06401 1.66183 1.20484 0.79226 0.91064 0.72081 1.90453 1.53996 1.52635 1.47458 1.17907 0.91816 0.90820 0.96571 0.92270 1.20846 1.25710 1.14001 0.96934 0.91807 1.25442 0.96501 0.95600 0.98389 1.70184 1.40052 1.26484 1.13447 0.86004 0.80495 0.79754 0.77835 1.20277 1.21922 1.19295 1.19847 0.94237 0.93840 0.95386 1.21114 0.95733 0.98499 0.95325 1.21272 0.93729 1.00945 1.01214 1.21158 0.99395 0.96619 0.98736 1.21197 0.96797 0.99687 0.98898 1.21167 0.93189 0.98081 1.00800 0.92612 0.91345 0.84212 0.83916 0.88204 0.86477 0.75864 0.93452 0.87383 0.85878 0.84629 0.85379 0.87208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.56 113.37 1.20 1.65 16 2 O -0.35 -8.07 10.37 -51.43 -0.53 -8.61 16 3 C 0.47 13.95 7.32 71.24 0.52 14.47 16 4 O -0.52 -18.64 15.59 21.96 0.34 -18.30 16 5 C 0.16 5.01 2.77 44.25 0.12 5.13 16 6 H 0.12 3.88 7.58 -2.39 -0.02 3.86 16 7 C -0.16 -3.90 5.15 30.59 0.16 -3.74 16 8 C 0.27 7.82 4.47 71.98 0.32 8.14 16 9 F -0.21 -5.99 17.34 44.97 0.78 -5.21 16 10 F -0.21 -7.64 11.12 44.97 0.50 -7.14 16 11 N -0.73 -28.09 4.62 -446.10 -2.06 -30.14 16 12 C 0.58 26.08 2.97 87.66 0.26 26.34 16 13 O -0.57 -27.03 10.60 -3.04 -0.03 -27.06 16 14 C 0.05 2.39 2.78 -13.03 -0.04 2.35 16 15 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 16 C -0.54 -26.91 7.11 25.60 0.18 -26.72 16 17 H 0.06 3.14 7.81 -2.91 -0.02 3.12 16 18 C 0.05 2.33 4.00 84.65 0.34 2.67 16 19 N -0.87 -47.20 10.89 21.45 0.23 -46.96 16 20 Si 0.93 42.06 29.54 68.60 2.03 44.09 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 22 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 24 C -0.03 -1.54 4.51 -19.87 -0.09 -1.63 16 25 C -0.09 -4.19 8.20 22.27 0.18 -4.00 16 26 C -0.15 -6.28 10.05 22.27 0.22 -6.05 16 27 C -0.14 -5.27 10.05 22.27 0.22 -5.04 16 28 C -0.15 -5.81 10.05 22.27 0.22 -5.58 16 29 C -0.11 -5.12 8.21 22.27 0.18 -4.94 16 30 H 0.06 1.05 8.13 -2.39 -0.02 1.03 16 31 H 0.07 1.10 8.13 -2.39 -0.02 1.08 16 32 H 0.14 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.14 2.42 7.99 -2.39 -0.02 2.40 16 34 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.12 3.41 7.57 -2.38 -0.02 3.39 16 36 H 0.41 15.89 7.68 -92.70 -0.71 15.18 16 37 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 38 H 0.11 5.40 6.03 -2.91 -0.02 5.38 16 39 H 0.12 4.35 8.06 -2.91 -0.02 4.32 16 40 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 41 H 0.13 4.22 8.06 -2.91 -0.02 4.20 16 42 H 0.11 4.94 5.77 -2.91 -0.02 4.92 16 Total: -1.00 -65.27 353.17 5.63 -59.64 By element: Atomic # 1 Polarization: 36.31 SS G_CDS: 0.36 Total: 36.67 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: 4.01 Total: 3.03 kcal Atomic # 7 Polarization: -75.28 SS G_CDS: -1.83 Total: -77.11 kcal Atomic # 8 Polarization: -53.74 SS G_CDS: -0.22 Total: -53.96 kcal Atomic # 9 Polarization: -13.64 SS G_CDS: 1.28 Total: -12.36 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -65.27 5.63 -59.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362601419.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.975 kcal (2) G-P(sol) polarization free energy of solvation -65.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds