Wall clock time and date at job start Sat Apr 11 2020 06:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46510 * 120.00096 * 2 1 4 4 C 1.52994 * 109.46727 * 269.99570 * 3 2 1 5 5 S 1.81402 * 109.46979 * 179.97438 * 4 3 2 6 6 N 1.65598 * 104.45316 * 179.97438 * 5 4 3 7 7 O 1.42095 * 110.54212 * 291.62700 * 5 4 3 8 8 O 1.42103 * 110.54014 * 68.37463 * 5 4 3 9 9 C 1.34780 * 120.00185 * 179.97438 * 2 1 3 10 10 O 1.21593 * 119.99752 * 180.02562 * 9 2 1 11 11 N 1.34771 * 119.99812 * 0.02562 * 9 2 1 12 12 C 1.39952 * 119.99945 * 184.58747 * 11 9 2 13 13 C 1.38861 * 120.06680 * 324.90947 * 12 11 9 14 14 C 1.38121 * 119.92862 * 180.02562 * 13 12 11 15 15 C 1.38286 * 120.06656 * 0.03135 * 14 13 12 16 16 C 1.50701 * 119.92533 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.47044 * 89.99656 * 16 15 14 18 18 H 1.07997 * 119.99845 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99511 * 180.27038 * 17 16 15 20 20 N 1.31522 * 119.99712 * 179.72324 * 19 17 16 21 21 Si 1.86801 * 120.00241 * 359.72594 * 19 17 16 22 22 H 1.48503 * 109.46754 * 89.99890 * 21 19 17 23 23 H 1.48503 * 109.46787 * 209.99767 * 21 19 17 24 24 H 1.48490 * 109.47010 * 329.99861 * 21 19 17 25 25 C 1.38274 * 120.13928 * 0.22350 * 15 14 13 26 26 C 1.38115 * 120.07111 * 359.49438 * 25 15 14 27 27 H 1.08999 * 109.47724 * 270.00433 * 1 2 3 28 28 H 1.09000 * 109.47120 * 30.01009 * 1 2 3 29 29 H 1.09003 * 109.46824 * 149.99793 * 1 2 3 30 30 H 1.09004 * 109.46687 * 29.99286 * 3 2 1 31 31 H 1.09000 * 109.47187 * 149.99323 * 3 2 1 32 32 H 1.09004 * 109.47306 * 299.99337 * 4 3 2 33 33 H 1.09000 * 109.47489 * 59.99938 * 4 3 2 34 34 H 0.97006 * 119.99755 * 359.97438 * 6 5 4 35 35 H 0.96998 * 120.00022 * 180.02562 * 6 5 4 36 36 H 0.97000 * 120.00275 * 4.58390 * 11 9 2 37 37 H 1.07992 * 120.04051 * 0.02562 * 13 12 11 38 38 H 1.07992 * 119.96791 * 180.02562 * 14 13 12 39 39 H 1.08994 * 109.47221 * 329.99625 * 16 15 14 40 40 H 1.08999 * 109.46517 * 209.99356 * 16 15 14 41 41 H 0.97000 * 119.99767 * 180.02562 * 20 19 17 42 42 H 1.08003 * 119.95983 * 179.72978 * 25 15 14 43 43 H 1.08001 * 120.03408 * 180.25310 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4526 1.7103 -1.4425 5 16 3.3589 3.2817 -1.4426 6 7 3.5663 3.6391 -3.0461 7 8 2.5365 4.3317 -0.9524 8 8 4.6795 3.0956 -0.9519 9 6 2.1389 -1.1672 0.0005 10 8 3.3548 -1.1671 0.0010 11 7 1.4650 -2.3344 0.0005 12 6 2.1614 -3.5444 0.0980 13 6 3.4059 -3.6812 -0.5026 14 6 4.0904 -4.8769 -0.4051 15 6 3.5373 -5.9372 0.2893 16 6 4.2867 -7.2406 0.3932 17 6 5.1618 -7.2204 1.6200 18 1 5.1744 -6.3506 2.2601 19 6 5.9510 -8.3100 1.9218 20 7 6.7188 -8.2903 2.9895 21 14 5.9297 -9.8141 0.8143 22 1 6.9665 -9.6680 -0.2388 23 1 6.2122 -11.0277 1.6222 24 1 4.5936 -9.9422 0.1792 25 6 2.2960 -5.8058 0.8840 26 6 1.6090 -4.6109 0.7950 27 1 -0.3634 0.0001 1.0276 28 1 -0.3633 0.8899 -0.5140 29 1 -0.3633 -0.8900 -0.5139 30 1 1.6083 2.0285 0.5138 31 1 3.1499 1.1385 0.5139 32 1 3.0418 0.9507 -1.9562 33 1 1.5002 1.8406 -1.9564 34 1 3.2211 3.0388 -3.7254 35 1 4.0337 4.4483 -3.3062 36 1 0.4974 -2.3358 -0.0670 37 1 3.8381 -2.8537 -1.0454 38 1 5.0585 -4.9839 -0.8716 39 1 4.9067 -7.3749 -0.4931 40 1 3.5758 -8.0634 0.4675 41 1 7.2742 -9.0567 3.2016 42 1 1.8648 -6.6372 1.4219 43 1 0.6413 -4.5075 1.2632 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365532890.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:43 Heat of formation + Delta-G solvation = -61.866380 kcal Electronic energy + Delta-G solvation = -26656.022012 eV Core-core repulsion = 22636.037797 eV Total energy + Delta-G solvation = -4019.984215 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.84933 -38.64772 -37.40063 -36.39813 -36.29278 -35.09600 -33.64994 -33.08531 -32.07374 -30.55734 -30.34953 -27.43354 -26.96227 -24.59381 -22.73347 -22.39569 -20.60294 -19.91875 -19.82834 -18.72406 -18.16159 -17.77261 -17.28801 -16.73998 -16.42208 -16.32901 -15.79670 -15.36078 -14.92503 -14.89124 -14.42983 -14.08157 -14.04676 -13.65239 -13.26438 -13.20182 -13.01180 -12.83391 -12.56651 -12.47965 -12.43341 -12.34664 -12.33968 -11.92425 -11.64931 -11.54810 -11.41116 -10.90223 -10.83259 -10.52984 -10.38495 -10.11493 -9.83515 -9.66020 -9.29356 -9.20150 -8.55850 -8.34386 -7.43319 -6.04308 -4.03392 -0.25816 1.84373 2.00281 2.24654 2.40915 2.95403 3.21184 3.30226 3.37706 3.40045 3.58981 3.81917 3.99631 4.35093 4.42846 4.43470 4.50977 4.66829 4.86266 4.95522 5.13435 5.23627 5.26590 5.36756 5.50314 5.52688 5.77719 5.87003 5.94428 6.08111 6.11714 6.37559 6.54467 6.57453 6.81838 6.87640 6.95988 7.04209 7.08582 7.59255 7.60416 7.65192 7.73813 8.33248 8.53038 9.02122 9.55610 11.08719 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.019612 B = 0.002077 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.351320 B =13479.540889 C =14287.734465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.627 5.627 3 C 0.147 3.853 4 C -0.645 4.645 5 S 2.620 3.380 6 N -1.251 6.251 7 O -0.963 6.963 8 O -0.953 6.953 9 C 0.701 3.299 10 O -0.561 6.561 11 N -0.678 5.678 12 C 0.120 3.880 13 C -0.115 4.115 14 C -0.106 4.106 15 C -0.038 4.038 16 C 0.015 3.985 17 C -0.512 4.512 18 H 0.074 0.926 19 C 0.068 3.932 20 N -0.900 5.900 21 Si 0.879 3.121 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.265 1.265 25 C -0.106 4.106 26 C -0.142 4.142 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.143 0.857 33 H 0.136 0.864 34 H 0.412 0.588 35 H 0.420 0.580 36 H 0.401 0.599 37 H 0.131 0.869 38 H 0.122 0.878 39 H 0.023 0.977 40 H 0.028 0.972 41 H 0.264 0.736 42 H 0.123 0.877 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.291 22.393 -13.387 31.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.365 5.365 3 C 0.021 3.979 4 C -0.775 4.775 5 S 2.710 3.290 6 N -0.925 5.925 7 O -0.952 6.952 8 O -0.942 6.942 9 C 0.403 3.597 10 O -0.436 6.436 11 N -0.327 5.327 12 C 0.027 3.973 13 C -0.136 4.136 14 C -0.125 4.125 15 C -0.039 4.039 16 C -0.022 4.022 17 C -0.550 4.550 18 H 0.092 0.908 19 C -0.134 4.134 20 N -0.538 5.538 21 Si 0.706 3.294 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.190 1.190 25 C -0.124 4.124 26 C -0.163 4.163 27 H 0.082 0.918 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.114 0.886 31 H 0.124 0.876 32 H 0.161 0.839 33 H 0.154 0.846 34 H 0.238 0.762 35 H 0.250 0.750 36 H 0.238 0.762 37 H 0.149 0.851 38 H 0.140 0.860 39 H 0.042 0.958 40 H 0.046 0.954 41 H 0.074 0.926 42 H 0.141 0.859 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -16.006 22.818 -12.303 30.467 hybrid contribution -0.774 -1.242 -1.292 1.952 sum -16.779 21.576 -13.595 30.527 Atomic orbital electron populations 1.21838 0.79325 1.03283 1.02511 1.46896 1.06445 1.04243 1.78952 1.20902 0.99994 0.85587 0.91397 1.30933 1.15640 1.22988 1.07987 1.04600 0.75403 0.75994 0.73013 1.53113 1.75813 1.36749 1.26823 1.93621 1.70804 1.52146 1.78671 1.93664 1.36108 1.86039 1.78371 1.15910 0.85484 0.80249 0.78095 1.90993 1.11091 1.85517 1.55995 1.42579 1.09833 1.03528 1.76769 1.17330 0.94582 0.84384 1.00961 1.21145 0.94420 0.97912 1.00081 1.20999 0.99507 0.92160 0.99802 1.20313 0.93160 0.97219 0.93177 1.18804 0.95276 0.90106 0.98053 1.20951 1.23051 1.03236 1.07781 0.90787 1.25016 0.94884 0.98367 0.95088 1.69910 1.26876 1.30973 1.26064 0.86796 0.79012 0.82724 0.80903 1.20183 1.21305 1.18957 1.20835 0.95010 0.96794 0.99799 1.20704 1.01001 0.93700 1.00883 0.91845 0.90402 0.91178 0.88571 0.87630 0.83856 0.84600 0.76156 0.74975 0.76220 0.85144 0.85988 0.95844 0.95430 0.92633 0.85900 0.86749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.32 10.24 59.84 0.61 0.94 16 2 N -0.63 -5.38 2.87 -187.35 -0.54 -5.92 16 3 C 0.15 1.13 5.41 -4.04 -0.02 1.11 16 4 C -0.65 -3.37 6.41 37.15 0.24 -3.13 16 5 S 2.62 17.78 5.97 -107.50 -0.64 17.14 16 6 N -1.25 -4.58 9.43 60.35 0.57 -4.01 16 7 O -0.96 -9.33 18.10 -57.54 -1.04 -10.37 16 8 O -0.95 -11.25 18.10 -57.54 -1.04 -12.29 16 9 C 0.70 9.13 8.12 -86.92 -0.71 8.43 16 10 O -0.56 -9.75 13.36 5.28 0.07 -9.68 16 11 N -0.68 -8.15 5.22 -14.22 -0.07 -8.22 16 12 C 0.12 1.91 6.30 -83.69 -0.53 1.38 16 13 C -0.12 -2.09 8.70 -39.39 -0.34 -2.43 16 14 C -0.11 -2.11 9.69 -39.61 -0.38 -2.49 16 15 C -0.04 -0.80 5.07 -104.59 -0.53 -1.33 16 16 C 0.01 0.35 4.17 -29.03 -0.12 0.23 16 17 C -0.51 -14.72 9.65 -34.44 -0.33 -15.05 16 18 H 0.07 2.35 7.98 -52.49 -0.42 1.93 16 19 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 20 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 21 Si 0.88 21.47 27.46 -169.99 -4.67 16.80 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.26 -6.15 6.55 56.52 0.37 -5.78 16 25 C -0.11 -1.96 9.69 -39.61 -0.38 -2.34 16 26 C -0.14 -2.23 9.97 -39.40 -0.39 -2.62 16 27 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.08 0.17 8.07 -51.93 -0.42 -0.24 16 29 H 0.07 0.23 6.30 -51.93 -0.33 -0.10 16 30 H 0.10 0.47 8.07 -51.93 -0.42 0.05 16 31 H 0.11 1.03 7.42 -51.93 -0.39 0.65 16 32 H 0.14 0.83 8.14 -51.92 -0.42 0.41 16 33 H 0.14 0.28 8.14 -51.92 -0.42 -0.14 16 34 H 0.41 0.36 8.83 -34.47 -0.30 0.06 16 35 H 0.42 1.26 8.96 -34.47 -0.31 0.95 16 36 H 0.40 3.24 6.52 -40.82 -0.27 2.98 16 37 H 0.13 2.35 6.22 -52.49 -0.33 2.02 16 38 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 39 H 0.02 0.55 7.50 -51.93 -0.39 0.16 16 40 H 0.03 0.64 7.15 -51.93 -0.37 0.27 16 41 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 42 H 0.12 2.15 8.06 -52.48 -0.42 1.73 16 43 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 LS Contribution 374.08 15.07 5.64 5.64 Total: -1.00 -41.72 374.08 -9.58 -51.31 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -5.64 Total: 2.18 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: -2.99 Total: -15.43 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: 0.73 Total: -45.30 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -2.01 Total: -32.34 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Atomic # 16 Polarization: 17.78 SS G_CDS: -0.64 Total: 17.14 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -41.72 -9.58 -51.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365532890.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.558 kcal (2) G-P(sol) polarization free energy of solvation -41.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds