Wall clock time and date at job start Sat Apr 11 2020 06:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46510 * 120.00096 * 2 1 4 4 C 1.52994 * 109.46727 * 269.99570 * 3 2 1 5 5 S 1.81402 * 109.46979 * 179.97438 * 4 3 2 6 6 N 1.65598 * 104.45316 * 179.97438 * 5 4 3 7 7 O 1.42095 * 110.54212 * 291.62700 * 5 4 3 8 8 O 1.42103 * 110.54014 * 68.37463 * 5 4 3 9 9 C 1.34780 * 120.00185 * 179.97438 * 2 1 3 10 10 O 1.21593 * 119.99752 * 180.02562 * 9 2 1 11 11 N 1.34771 * 119.99812 * 0.02562 * 9 2 1 12 12 C 1.39952 * 119.99945 * 184.58747 * 11 9 2 13 13 C 1.38861 * 120.06680 * 324.90947 * 12 11 9 14 14 C 1.38121 * 119.92862 * 180.02562 * 13 12 11 15 15 C 1.38286 * 120.06656 * 0.03135 * 14 13 12 16 16 C 1.50701 * 119.92533 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.47044 * 89.99656 * 16 15 14 18 18 H 1.07997 * 119.99845 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99511 * 180.27038 * 17 16 15 20 20 N 1.31522 * 119.99712 * 179.72324 * 19 17 16 21 21 Si 1.86801 * 120.00241 * 359.72594 * 19 17 16 22 22 H 1.48503 * 109.46754 * 89.99890 * 21 19 17 23 23 H 1.48503 * 109.46787 * 209.99767 * 21 19 17 24 24 H 1.48490 * 109.47010 * 329.99861 * 21 19 17 25 25 C 1.38274 * 120.13928 * 0.22350 * 15 14 13 26 26 C 1.38115 * 120.07111 * 359.49438 * 25 15 14 27 27 H 1.08999 * 109.47724 * 270.00433 * 1 2 3 28 28 H 1.09000 * 109.47120 * 30.01009 * 1 2 3 29 29 H 1.09003 * 109.46824 * 149.99793 * 1 2 3 30 30 H 1.09004 * 109.46687 * 29.99286 * 3 2 1 31 31 H 1.09000 * 109.47187 * 149.99323 * 3 2 1 32 32 H 1.09004 * 109.47306 * 299.99337 * 4 3 2 33 33 H 1.09000 * 109.47489 * 59.99938 * 4 3 2 34 34 H 0.97006 * 119.99755 * 359.97438 * 6 5 4 35 35 H 0.96998 * 120.00022 * 180.02562 * 6 5 4 36 36 H 0.97000 * 120.00275 * 4.58390 * 11 9 2 37 37 H 1.07992 * 120.04051 * 0.02562 * 13 12 11 38 38 H 1.07992 * 119.96791 * 180.02562 * 14 13 12 39 39 H 1.08994 * 109.47221 * 329.99625 * 16 15 14 40 40 H 1.08999 * 109.46517 * 209.99356 * 16 15 14 41 41 H 0.97000 * 119.99767 * 180.02562 * 20 19 17 42 42 H 1.08003 * 119.95983 * 179.72978 * 25 15 14 43 43 H 1.08001 * 120.03408 * 180.25310 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4526 1.7103 -1.4425 5 16 3.3589 3.2817 -1.4426 6 7 3.5663 3.6391 -3.0461 7 8 2.5365 4.3317 -0.9524 8 8 4.6795 3.0956 -0.9519 9 6 2.1389 -1.1672 0.0005 10 8 3.3548 -1.1671 0.0010 11 7 1.4650 -2.3344 0.0005 12 6 2.1614 -3.5444 0.0980 13 6 3.4059 -3.6812 -0.5026 14 6 4.0904 -4.8769 -0.4051 15 6 3.5373 -5.9372 0.2893 16 6 4.2867 -7.2406 0.3932 17 6 5.1618 -7.2204 1.6200 18 1 5.1744 -6.3506 2.2601 19 6 5.9510 -8.3100 1.9218 20 7 6.7188 -8.2903 2.9895 21 14 5.9297 -9.8141 0.8143 22 1 6.9665 -9.6680 -0.2388 23 1 6.2122 -11.0277 1.6222 24 1 4.5936 -9.9422 0.1792 25 6 2.2960 -5.8058 0.8840 26 6 1.6090 -4.6109 0.7950 27 1 -0.3634 0.0001 1.0276 28 1 -0.3633 0.8899 -0.5140 29 1 -0.3633 -0.8900 -0.5139 30 1 1.6083 2.0285 0.5138 31 1 3.1499 1.1385 0.5139 32 1 3.0418 0.9507 -1.9562 33 1 1.5002 1.8406 -1.9564 34 1 3.2211 3.0388 -3.7254 35 1 4.0337 4.4483 -3.3062 36 1 0.4974 -2.3358 -0.0670 37 1 3.8381 -2.8537 -1.0454 38 1 5.0585 -4.9839 -0.8716 39 1 4.9067 -7.3749 -0.4931 40 1 3.5758 -8.0634 0.4675 41 1 7.2742 -9.0567 3.2016 42 1 1.8648 -6.6372 1.4219 43 1 0.6413 -4.5075 1.2632 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365532890.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:43 Heat of formation + Delta-G solvation = -96.578103 kcal Electronic energy + Delta-G solvation = -26657.527225 eV Core-core repulsion = 22636.037797 eV Total energy + Delta-G solvation = -4021.489428 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.85991 -39.92642 -38.10147 -37.25172 -37.01945 -36.34349 -34.97794 -34.04412 -33.11923 -31.97103 -31.76103 -28.78768 -27.72700 -25.59821 -24.27676 -23.78077 -21.98771 -21.02101 -20.40886 -19.58882 -18.95813 -18.67833 -18.41686 -18.21730 -17.06996 -17.03778 -16.89271 -16.44424 -16.07117 -15.97416 -15.81425 -15.33893 -14.86621 -14.70934 -14.51912 -14.36490 -14.24039 -13.84223 -13.63787 -13.49382 -13.39162 -13.23427 -13.18614 -13.11231 -13.07685 -12.52918 -12.44905 -12.13325 -12.03977 -11.94934 -11.80246 -11.57039 -11.28943 -11.25237 -10.92092 -10.77955 -9.92380 -9.75085 -8.80990 -8.28558 -6.34106 -0.81289 0.46987 0.58485 1.37648 1.39441 1.41442 1.51747 1.87677 2.00782 2.36623 2.63678 2.83778 2.99111 3.05516 3.35619 3.46679 3.79175 4.05253 4.17039 4.18582 4.22610 4.33884 4.37959 4.57266 4.59462 4.66353 4.72256 4.77114 4.89871 5.07428 5.08475 5.21638 5.26511 5.32574 5.42190 5.44412 5.57608 5.64635 5.76920 6.02467 6.18103 6.30616 6.34667 6.72697 6.76558 7.29162 7.37560 8.88273 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.019612 B = 0.002077 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.351320 B =13479.540889 C =14287.734465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.615 5.615 3 C 0.129 3.871 4 C -0.626 4.626 5 S 2.638 3.362 6 N -1.239 6.239 7 O -0.993 6.993 8 O -1.012 7.012 9 C 0.693 3.307 10 O -0.613 6.613 11 N -0.664 5.664 12 C 0.135 3.865 13 C -0.126 4.126 14 C -0.121 4.121 15 C -0.075 4.075 16 C 0.022 3.978 17 C -0.520 4.520 18 H 0.022 0.978 19 C 0.003 3.997 20 N -0.952 5.952 21 Si 0.955 3.045 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.240 1.240 25 C -0.112 4.112 26 C -0.129 4.129 27 H 0.074 0.926 28 H 0.108 0.892 29 H 0.085 0.915 30 H 0.128 0.872 31 H 0.075 0.925 32 H 0.140 0.860 33 H 0.180 0.820 34 H 0.427 0.573 35 H 0.425 0.575 36 H 0.424 0.576 37 H 0.127 0.873 38 H 0.112 0.888 39 H 0.027 0.973 40 H 0.038 0.962 41 H 0.267 0.733 42 H 0.132 0.868 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.152 22.725 -15.343 34.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.352 5.352 3 C 0.004 3.996 4 C -0.758 4.758 5 S 2.730 3.270 6 N -0.917 5.917 7 O -0.982 6.982 8 O -1.001 7.001 9 C 0.395 3.605 10 O -0.492 6.492 11 N -0.315 5.315 12 C 0.040 3.960 13 C -0.146 4.146 14 C -0.140 4.140 15 C -0.076 4.076 16 C -0.015 4.015 17 C -0.558 4.558 18 H 0.041 0.959 19 C -0.193 4.193 20 N -0.592 5.592 21 Si 0.778 3.222 22 H -0.193 1.193 23 H -0.208 1.208 24 H -0.164 1.164 25 C -0.131 4.131 26 C -0.150 4.150 27 H 0.092 0.908 28 H 0.127 0.873 29 H 0.104 0.896 30 H 0.146 0.854 31 H 0.093 0.907 32 H 0.158 0.842 33 H 0.197 0.803 34 H 0.257 0.743 35 H 0.257 0.743 36 H 0.265 0.735 37 H 0.145 0.855 38 H 0.131 0.869 39 H 0.045 0.955 40 H 0.056 0.944 41 H 0.076 0.924 42 H 0.150 0.850 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -19.947 23.223 -14.287 33.783 hybrid contribution 0.328 -1.142 -0.652 1.356 sum -19.619 22.081 -14.939 33.100 Atomic orbital electron populations 1.22245 0.76143 1.05654 1.04020 1.46916 1.08222 1.02784 1.77248 1.21150 0.99477 0.86051 0.92961 1.30723 1.17340 1.20720 1.07006 1.03731 0.74123 0.75958 0.73161 1.52749 1.75736 1.37264 1.25942 1.93584 1.70965 1.53860 1.79751 1.93602 1.39489 1.86963 1.80004 1.16186 0.85037 0.81421 0.77888 1.90972 1.13648 1.86389 1.58203 1.42357 1.10761 1.02041 1.76320 1.17398 0.93732 0.85810 0.99041 1.21169 0.95658 0.96961 1.00854 1.20988 0.99578 0.92951 1.00473 1.20189 0.94792 0.96467 0.96103 1.18645 0.94913 0.92375 0.95602 1.21192 1.24171 1.01536 1.08913 0.95923 1.26066 0.94209 1.02299 0.96765 1.70082 1.28244 1.32407 1.28481 0.85585 0.80364 0.77619 0.78644 1.19273 1.20799 1.16358 1.21023 0.94308 0.98415 0.99358 1.21021 1.02218 0.92062 0.99652 0.90790 0.87345 0.89630 0.85372 0.90689 0.84164 0.80273 0.74311 0.74341 0.73530 0.85512 0.86947 0.95470 0.94403 0.92401 0.85042 0.82324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.24 10.24 127.77 1.31 1.55 16 2 N -0.61 -8.78 2.87 -864.90 -2.49 -11.26 16 3 C 0.13 1.75 5.41 86.38 0.47 2.21 16 4 C -0.63 -5.08 6.41 71.98 0.46 -4.62 16 5 S 2.64 33.96 5.97 -56.49 -0.34 33.62 16 6 N -1.24 -7.27 9.43 37.02 0.35 -6.92 16 7 O -0.99 -18.18 18.10 -127.65 -2.31 -20.50 16 8 O -1.01 -24.99 18.10 -127.65 -2.31 -27.30 16 9 C 0.69 16.89 8.12 179.05 1.45 18.34 16 10 O -0.61 -21.54 13.36 -4.01 -0.05 -21.59 16 11 N -0.66 -14.05 5.22 -317.18 -1.65 -15.70 16 12 C 0.13 4.04 6.30 38.14 0.24 4.28 16 13 C -0.13 -4.60 8.70 22.39 0.19 -4.40 16 14 C -0.12 -4.98 9.69 22.25 0.22 -4.77 16 15 C -0.07 -3.21 5.07 -19.84 -0.10 -3.31 16 16 C 0.02 1.06 4.17 29.10 0.12 1.18 16 17 C -0.52 -31.11 9.65 25.60 0.25 -30.86 16 18 H 0.02 1.53 7.98 -2.91 -0.02 1.50 16 19 C 0.00 0.19 5.47 84.65 0.46 0.65 16 20 N -0.95 -61.24 13.96 21.45 0.30 -60.94 16 21 Si 0.96 44.52 27.46 68.60 1.88 46.40 16 22 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 23 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 24 H -0.24 -10.17 6.55 99.48 0.65 -9.52 16 25 C -0.11 -4.05 9.69 22.25 0.22 -3.84 16 26 C -0.13 -3.70 9.97 22.39 0.22 -3.47 16 27 H 0.07 0.21 8.14 -2.39 -0.02 0.20 16 28 H 0.11 -0.15 8.07 -2.39 -0.02 -0.17 16 29 H 0.09 0.10 6.30 -2.39 -0.02 0.09 16 30 H 0.13 0.89 8.07 -2.39 -0.02 0.87 16 31 H 0.07 1.51 7.42 -2.39 -0.02 1.49 16 32 H 0.14 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.18 -0.12 8.14 -2.39 -0.02 -0.14 16 34 H 0.43 -0.22 8.83 -96.74 -0.85 -1.08 16 35 H 0.43 2.07 8.96 -96.75 -0.87 1.20 16 36 H 0.42 4.98 6.52 -92.71 -0.60 4.37 16 37 H 0.13 4.70 6.22 -2.91 -0.02 4.68 16 38 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 39 H 0.03 1.27 7.50 -2.39 -0.02 1.26 16 40 H 0.04 1.73 7.15 -2.39 -0.02 1.72 16 41 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 42 H 0.13 4.42 8.06 -2.91 -0.02 4.39 16 43 H 0.16 3.12 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -97.20 374.08 -2.41 -99.62 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -1.31 Total: 11.62 kcal Atomic # 6 Polarization: -32.57 SS G_CDS: 5.51 Total: -27.05 kcal Atomic # 7 Polarization: -91.33 SS G_CDS: -3.49 Total: -94.82 kcal Atomic # 8 Polarization: -64.71 SS G_CDS: -4.68 Total: -69.38 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.88 Total: 46.40 kcal Atomic # 16 Polarization: 33.96 SS G_CDS: -0.34 Total: 33.62 kcal Total: -97.20 -2.41 -99.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365532890.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.038 kcal (2) G-P(sol) polarization free energy of solvation -97.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds