Wall clock time and date at job start Sat Apr 11 2020 06:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34660 * 116.99670 * 2 1 4 4 O 1.21413 * 120.00467 * 359.97438 * 3 2 1 5 5 C 1.48221 * 119.99814 * 179.97438 * 3 2 1 6 6 C 1.39692 * 120.00459 * 180.02562 * 5 3 2 7 7 N 1.31809 * 119.99367 * 179.97438 * 6 5 3 8 8 C 1.32937 * 120.00472 * 0.02562 * 7 6 5 9 9 C 1.48320 * 120.00016 * 179.97438 * 8 7 6 10 10 O 1.21494 * 119.99987 * 179.97438 * 9 8 7 11 11 N 1.34775 * 119.99913 * 359.97438 * 9 8 7 12 12 C 1.46500 * 119.99958 * 179.72040 * 11 9 8 13 13 C 1.50693 * 109.47113 * 180.27768 * 12 11 9 14 14 C 1.38636 * 119.75183 * 269.73074 * 13 12 11 15 15 C 1.37613 * 120.25290 * 179.72078 * 14 13 12 16 16 C 1.40719 * 119.74196 * 0.56980 * 15 14 13 17 17 C 1.41396 * 120.24493 * 179.68131 * 16 15 14 18 18 H 1.08001 * 119.99790 * 204.40300 * 17 16 15 19 19 C 1.39944 * 120.00016 * 24.40246 * 17 16 15 20 20 N 1.30828 * 119.99864 * 17.85776 * 19 17 16 21 21 Si 1.86800 * 119.99998 * 197.85901 * 19 17 16 22 22 H 1.48492 * 109.47216 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47232 * 119.99898 * 21 19 17 24 24 H 1.48500 * 109.46940 * 239.99735 * 21 19 17 25 25 C 1.40712 * 119.50961 * 359.70602 * 16 15 14 26 26 C 1.37619 * 119.74729 * 359.97438 * 25 16 15 27 27 C 1.39644 * 120.00428 * 0.27103 * 8 7 6 28 28 N 1.31818 * 120.00686 * 359.43386 * 27 8 7 29 29 H 1.08998 * 109.47410 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47510 * 300.00246 * 1 2 3 31 31 H 1.09007 * 109.47128 * 60.00252 * 1 2 3 32 32 H 1.08002 * 120.00648 * 359.95400 * 6 5 3 33 33 H 0.96997 * 119.99812 * 0.02562 * 11 9 8 34 34 H 1.09002 * 109.47015 * 300.28301 * 12 11 9 35 35 H 1.09000 * 109.46769 * 60.27386 * 12 11 9 36 36 H 1.08007 * 119.87302 * 359.97438 * 14 13 12 37 37 H 1.08005 * 120.13243 * 180.27545 * 15 14 13 38 38 H 0.97000 * 119.99393 * 180.02562 * 20 19 17 39 39 H 1.08008 * 120.12599 * 179.97438 * 25 16 15 40 40 H 1.07998 * 119.87603 * 180.02562 * 26 25 16 41 41 H 1.08002 * 119.99850 * 179.70710 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1999 0.0000 4 8 1.4020 2.2181 -0.0005 5 6 3.5434 1.2775 0.0006 6 6 4.1777 2.5221 0.0011 7 7 5.4940 2.5909 0.0021 8 6 6.2179 1.4759 0.0021 9 6 7.6991 1.5534 0.0027 10 8 8.3607 0.5344 0.0032 11 7 8.3111 2.7542 0.0027 12 6 9.7740 2.8308 0.0095 13 6 10.2014 4.2758 0.0149 14 6 10.4073 4.9369 -1.1862 15 6 10.7921 6.2581 -1.1933 16 6 10.9881 6.9347 0.0248 17 6 11.3900 8.2903 0.0299 18 1 11.9102 8.6961 0.8850 19 6 11.1138 9.1062 -1.0730 20 7 10.2038 8.7462 -1.9413 21 14 12.0443 10.7092 -1.3054 22 1 13.0122 10.8854 -0.1932 23 1 12.7754 10.6743 -2.5976 24 1 11.0846 11.8424 -1.3101 25 6 10.7818 6.2521 1.2378 26 6 10.3907 4.9327 1.2209 27 6 5.5840 0.2317 -0.0047 28 7 4.2676 0.1625 0.0002 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8901 32 1 3.5896 3.4280 0.0004 33 1 7.7828 3.5677 0.0027 34 1 10.1597 2.3344 0.9000 35 1 10.1677 2.3387 -0.8799 36 1 10.2612 4.4140 -2.1199 37 1 10.9477 6.7724 -2.1302 38 1 10.0127 9.3116 -2.7060 39 1 10.9297 6.7616 2.1786 40 1 10.2313 4.4069 2.1507 41 1 6.1722 -0.6741 -0.0094 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412210877.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:49 Heat of formation + Delta-G solvation = -49.797846 kcal Electronic energy + Delta-G solvation = -27046.020108 eV Core-core repulsion = 22891.115273 eV Total energy + Delta-G solvation = -4154.904836 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.90856 -40.57950 -39.29516 -37.71534 -36.99226 -35.20541 -34.74784 -33.47666 -32.42550 -30.44176 -29.40537 -28.61605 -27.29900 -26.13304 -25.02218 -23.77306 -22.31956 -21.13045 -20.91040 -20.19161 -18.98456 -18.44666 -17.87534 -17.42890 -17.24722 -16.96502 -15.73952 -15.70162 -15.51449 -15.41212 -15.08321 -14.69309 -14.32791 -13.97978 -13.79919 -13.68136 -13.52377 -13.32055 -12.58024 -12.55998 -12.23066 -12.15129 -12.06692 -11.79119 -11.73625 -11.39643 -11.26721 -11.20827 -11.07558 -10.81323 -10.51023 -10.45457 -10.00370 -9.80094 -9.61692 -9.52198 -9.26523 -8.84616 -7.61280 -7.49666 -6.90537 -4.50038 -0.51968 0.51525 1.69102 1.96644 2.47236 2.62917 2.91533 2.95805 3.00911 3.05858 3.19368 3.39340 3.43014 3.63628 3.83078 3.87125 4.30353 4.47349 4.54053 4.67001 4.76325 4.76345 5.07818 5.09911 5.55789 5.62672 5.71496 5.74936 5.80166 6.14093 6.20705 6.29211 6.44765 6.59442 6.83359 6.93875 6.94237 7.13945 7.18955 7.22427 7.47491 7.57735 7.76467 7.92384 7.96552 8.14039 8.17349 8.50448 8.75327 8.82831 10.03287 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015615 B = 0.002017 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.754928 B =13876.807813 C =15209.986578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.333 6.333 3 C 0.530 3.470 4 O -0.487 6.487 5 C 0.051 3.949 6 C 0.121 3.879 7 N -0.407 5.407 8 C 0.074 3.926 9 C 0.561 3.439 10 O -0.533 6.533 11 N -0.687 5.687 12 C 0.182 3.818 13 C -0.250 4.250 14 C -0.079 4.079 15 C -0.169 4.169 16 C 0.117 3.883 17 C -0.456 4.456 18 H 0.080 0.920 19 C 0.075 3.925 20 N -0.785 5.785 21 Si 0.909 3.091 22 H -0.259 1.259 23 H -0.271 1.271 24 H -0.274 1.274 25 C -0.229 4.229 26 C -0.067 4.067 27 C 0.103 3.897 28 N -0.388 5.388 29 H 0.106 0.894 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.193 0.807 33 H 0.413 0.587 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.119 0.881 38 H 0.282 0.718 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.285 -12.877 1.482 19.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.248 6.248 3 C 0.371 3.629 4 O -0.373 6.373 5 C -0.090 4.090 6 C -0.040 4.040 7 N -0.124 5.124 8 C -0.069 4.069 9 C 0.342 3.658 10 O -0.410 6.410 11 N -0.337 5.337 12 C 0.061 3.939 13 C -0.252 4.252 14 C -0.098 4.098 15 C -0.189 4.189 16 C 0.114 3.886 17 C -0.485 4.485 18 H 0.098 0.902 19 C -0.144 4.144 20 N -0.410 5.410 21 Si 0.733 3.267 22 H -0.183 1.183 23 H -0.196 1.196 24 H -0.199 1.199 25 C -0.249 4.249 26 C -0.086 4.086 27 C -0.060 4.060 28 N -0.105 5.105 29 H 0.125 0.875 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.210 0.790 33 H 0.250 0.750 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.137 0.863 38 H 0.093 0.907 39 H 0.112 0.888 40 H 0.107 0.893 41 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -14.154 -13.196 1.269 19.392 hybrid contribution -0.253 1.272 -0.196 1.312 sum -14.407 -11.923 1.073 18.732 Atomic orbital electron populations 1.23419 0.75410 1.04301 1.02909 1.86668 1.23708 1.31279 1.83126 1.20486 0.87125 0.82150 0.73132 1.90895 1.65495 1.36020 1.44919 1.21318 0.92446 0.91877 1.03335 1.23920 0.90548 0.98113 0.91443 1.68685 1.06301 1.30016 1.07422 1.22930 0.96923 0.91003 0.96035 1.17681 0.84502 0.84958 0.78617 1.90798 1.64508 1.34694 1.51032 1.46552 1.09302 1.07750 1.70060 1.20118 0.77110 0.95511 1.01204 1.18920 1.18063 0.94282 0.93948 1.20554 0.99180 0.94923 0.95162 1.21310 1.06001 0.92789 0.98765 1.17691 0.87138 0.92778 0.90973 1.19707 1.32354 0.94621 1.01799 0.90174 1.25967 0.93420 1.00259 0.94748 1.69828 1.23209 1.37356 1.10586 0.86244 0.80310 0.80678 0.79461 1.18285 1.19581 1.19889 1.20970 1.11772 0.95059 0.97094 1.20401 0.98468 0.94525 0.95233 1.23968 0.89796 0.99152 0.93096 1.68599 1.06809 1.29499 1.05598 0.87526 0.91463 0.91465 0.78982 0.75003 0.91764 0.91704 0.89352 0.86340 0.90692 0.88850 0.89334 0.78777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.56 101.05 1.07 1.26 16 2 O -0.33 -3.17 10.39 -40.38 -0.42 -3.59 16 3 C 0.53 5.61 7.96 34.83 0.28 5.89 16 4 O -0.49 -5.71 16.13 -19.20 -0.31 -6.02 16 5 C 0.05 0.55 6.76 -82.74 -0.56 -0.01 16 6 C 0.12 1.28 10.77 -17.02 -0.18 1.10 16 7 N -0.41 -5.05 9.70 -9.28 -0.09 -5.14 16 8 C 0.07 0.94 6.76 -82.72 -0.56 0.38 16 9 C 0.56 8.30 7.82 -12.11 -0.09 8.21 16 10 O -0.53 -8.88 16.34 5.37 0.09 -8.79 16 11 N -0.69 -10.70 5.54 -62.28 -0.34 -11.04 16 12 C 0.18 3.07 5.79 -5.20 -0.03 3.04 16 13 C -0.25 -4.99 5.27 -104.33 -0.55 -5.54 16 14 C -0.08 -1.71 9.67 -39.66 -0.38 -2.10 16 15 C -0.17 -4.14 8.70 -38.87 -0.34 -4.48 16 16 C 0.12 2.95 5.57 -106.82 -0.60 2.36 16 17 C -0.46 -11.52 9.05 -37.74 -0.34 -11.86 16 18 H 0.08 1.95 7.91 -52.49 -0.42 1.54 16 19 C 0.07 1.80 5.14 -17.34 -0.09 1.71 16 20 N -0.79 -19.34 10.95 55.55 0.61 -18.73 16 21 Si 0.91 17.83 29.60 -169.99 -5.03 12.80 16 22 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 23 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 24 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 25 C -0.23 -5.30 9.80 -38.87 -0.38 -5.68 16 26 C -0.07 -1.40 9.67 -39.66 -0.38 -1.78 16 27 C 0.10 1.14 10.77 -17.03 -0.18 0.95 16 28 N -0.39 -4.39 10.27 -9.31 -0.10 -4.49 16 29 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.19 1.65 7.64 -52.49 -0.40 1.25 16 33 H 0.41 6.46 7.81 -40.82 -0.32 6.14 16 34 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 35 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 36 H 0.09 1.75 8.06 -52.48 -0.42 1.32 16 37 H 0.12 3.02 6.16 -52.48 -0.32 2.69 16 38 H 0.28 6.30 8.30 -40.82 -0.34 5.96 16 39 H 0.09 2.04 8.06 -52.48 -0.42 1.62 16 40 H 0.09 1.63 8.06 -52.49 -0.42 1.20 16 41 H 0.20 1.81 7.64 -52.49 -0.40 1.41 16 LS Contribution 370.51 15.07 5.58 5.58 Total: -1.00 -28.40 370.51 -7.71 -36.11 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -4.37 Total: 9.86 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -3.33 Total: -6.55 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 0.08 Total: -39.40 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -0.64 Total: -18.40 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.03 Total: 12.80 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.40 -7.71 -36.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412210877.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.691 kcal (2) G-P(sol) polarization free energy of solvation -28.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds