Wall clock time and date at job start Sat Apr 11 2020 06:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34660 * 116.99670 * 2 1 4 4 O 1.21413 * 120.00467 * 359.97438 * 3 2 1 5 5 C 1.48221 * 119.99814 * 179.97438 * 3 2 1 6 6 C 1.39692 * 120.00459 * 180.02562 * 5 3 2 7 7 N 1.31809 * 119.99367 * 179.97438 * 6 5 3 8 8 C 1.32937 * 120.00472 * 0.02562 * 7 6 5 9 9 C 1.48320 * 120.00016 * 179.97438 * 8 7 6 10 10 O 1.21494 * 119.99987 * 179.97438 * 9 8 7 11 11 N 1.34775 * 119.99913 * 359.97438 * 9 8 7 12 12 C 1.46500 * 119.99958 * 179.72040 * 11 9 8 13 13 C 1.50693 * 109.47113 * 180.27768 * 12 11 9 14 14 C 1.38636 * 119.75183 * 269.73074 * 13 12 11 15 15 C 1.37613 * 120.25290 * 179.72078 * 14 13 12 16 16 C 1.40719 * 119.74196 * 0.56980 * 15 14 13 17 17 C 1.41396 * 120.24493 * 179.68131 * 16 15 14 18 18 H 1.08001 * 119.99790 * 204.40300 * 17 16 15 19 19 C 1.39944 * 120.00016 * 24.40246 * 17 16 15 20 20 N 1.30828 * 119.99864 * 17.85776 * 19 17 16 21 21 Si 1.86800 * 119.99998 * 197.85901 * 19 17 16 22 22 H 1.48492 * 109.47216 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47232 * 119.99898 * 21 19 17 24 24 H 1.48500 * 109.46940 * 239.99735 * 21 19 17 25 25 C 1.40712 * 119.50961 * 359.70602 * 16 15 14 26 26 C 1.37619 * 119.74729 * 359.97438 * 25 16 15 27 27 C 1.39644 * 120.00428 * 0.27103 * 8 7 6 28 28 N 1.31818 * 120.00686 * 359.43386 * 27 8 7 29 29 H 1.08998 * 109.47410 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47510 * 300.00246 * 1 2 3 31 31 H 1.09007 * 109.47128 * 60.00252 * 1 2 3 32 32 H 1.08002 * 120.00648 * 359.95400 * 6 5 3 33 33 H 0.96997 * 119.99812 * 0.02562 * 11 9 8 34 34 H 1.09002 * 109.47015 * 300.28301 * 12 11 9 35 35 H 1.09000 * 109.46769 * 60.27386 * 12 11 9 36 36 H 1.08007 * 119.87302 * 359.97438 * 14 13 12 37 37 H 1.08005 * 120.13243 * 180.27545 * 15 14 13 38 38 H 0.97000 * 119.99393 * 180.02562 * 20 19 17 39 39 H 1.08008 * 120.12599 * 179.97438 * 25 16 15 40 40 H 1.07998 * 119.87603 * 180.02562 * 26 25 16 41 41 H 1.08002 * 119.99850 * 179.70710 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1999 0.0000 4 8 1.4020 2.2181 -0.0005 5 6 3.5434 1.2775 0.0006 6 6 4.1777 2.5221 0.0011 7 7 5.4940 2.5909 0.0021 8 6 6.2179 1.4759 0.0021 9 6 7.6991 1.5534 0.0027 10 8 8.3607 0.5344 0.0032 11 7 8.3111 2.7542 0.0027 12 6 9.7740 2.8308 0.0095 13 6 10.2014 4.2758 0.0149 14 6 10.4073 4.9369 -1.1862 15 6 10.7921 6.2581 -1.1933 16 6 10.9881 6.9347 0.0248 17 6 11.3900 8.2903 0.0299 18 1 11.9102 8.6961 0.8850 19 6 11.1138 9.1062 -1.0730 20 7 10.2038 8.7462 -1.9413 21 14 12.0443 10.7092 -1.3054 22 1 13.0122 10.8854 -0.1932 23 1 12.7754 10.6743 -2.5976 24 1 11.0846 11.8424 -1.3101 25 6 10.7818 6.2521 1.2378 26 6 10.3907 4.9327 1.2209 27 6 5.5840 0.2317 -0.0047 28 7 4.2676 0.1625 0.0002 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8901 32 1 3.5896 3.4280 0.0004 33 1 7.7828 3.5677 0.0027 34 1 10.1597 2.3344 0.9000 35 1 10.1677 2.3387 -0.8799 36 1 10.2612 4.4140 -2.1199 37 1 10.9477 6.7724 -2.1302 38 1 10.0127 9.3116 -2.7060 39 1 10.9297 6.7616 2.1786 40 1 10.2313 4.4069 2.1507 41 1 6.1722 -0.6741 -0.0094 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412210877.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:48 Heat of formation + Delta-G solvation = -67.029044 kcal Electronic energy + Delta-G solvation = -27046.767309 eV Core-core repulsion = 22891.115273 eV Total energy + Delta-G solvation = -4155.652036 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.80750 -41.41976 -40.49331 -39.39680 -37.75754 -36.46179 -35.94859 -35.04960 -33.35187 -32.06933 -31.16790 -29.42701 -28.59043 -27.19022 -25.97130 -25.25153 -23.22297 -22.89558 -22.06037 -21.80786 -19.85035 -19.49153 -19.23752 -18.83085 -18.05253 -17.71869 -17.21491 -16.88643 -16.76867 -16.41346 -16.14635 -15.85680 -15.71347 -15.39835 -15.21766 -14.85451 -14.37673 -14.33121 -14.20834 -13.82262 -13.61422 -13.43972 -13.14338 -13.07817 -12.83782 -12.72651 -12.70970 -12.51349 -12.20873 -12.09616 -11.89914 -11.70937 -11.46992 -11.28874 -11.03980 -10.90718 -10.58223 -10.13019 -9.39199 -9.28324 -8.67243 -6.36880 -1.43455 -0.35214 0.80919 0.82087 1.14864 1.23675 1.38799 1.44993 1.53530 1.59790 1.95266 2.19898 2.43469 2.57549 2.62437 2.78733 2.96846 3.52726 3.63198 3.68658 3.76775 4.16579 4.25103 4.30283 4.32117 4.33807 4.52182 4.66701 4.70520 4.76422 4.82569 5.02894 5.05383 5.14724 5.28403 5.36346 5.43842 5.59234 5.68994 5.90397 6.05197 6.09238 6.19817 6.36526 6.38815 6.45290 6.68412 6.92022 6.94100 7.00942 8.29205 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015615 B = 0.002017 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.754928 B =13876.807813 C =15209.986578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.342 6.342 3 C 0.533 3.467 4 O -0.501 6.501 5 C 0.055 3.945 6 C 0.123 3.877 7 N -0.420 5.420 8 C 0.063 3.937 9 C 0.568 3.432 10 O -0.551 6.551 11 N -0.690 5.690 12 C 0.190 3.810 13 C -0.231 4.231 14 C -0.081 4.081 15 C -0.193 4.193 16 C 0.085 3.915 17 C -0.495 4.495 18 H 0.076 0.924 19 C 0.036 3.964 20 N -0.818 5.818 21 Si 0.980 3.020 22 H -0.258 1.258 23 H -0.265 1.265 24 H -0.266 1.266 25 C -0.244 4.244 26 C -0.067 4.067 27 C 0.112 3.888 28 N -0.393 5.393 29 H 0.135 0.865 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.211 0.789 33 H 0.414 0.586 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.289 0.711 39 H 0.097 0.903 40 H 0.118 0.882 41 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.427 -14.154 1.744 21.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.256 6.256 3 C 0.375 3.625 4 O -0.389 6.389 5 C -0.086 4.086 6 C -0.038 4.038 7 N -0.137 5.137 8 C -0.079 4.079 9 C 0.351 3.649 10 O -0.429 6.429 11 N -0.339 5.339 12 C 0.068 3.932 13 C -0.232 4.232 14 C -0.100 4.100 15 C -0.212 4.212 16 C 0.083 3.917 17 C -0.524 4.524 18 H 0.094 0.906 19 C -0.180 4.180 20 N -0.444 5.444 21 Si 0.801 3.199 22 H -0.182 1.182 23 H -0.189 1.189 24 H -0.191 1.191 25 C -0.264 4.264 26 C -0.085 4.085 27 C -0.050 4.050 28 N -0.110 5.110 29 H 0.153 0.847 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.228 0.772 33 H 0.250 0.750 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.124 0.876 37 H 0.118 0.882 38 H 0.100 0.900 39 H 0.116 0.884 40 H 0.136 0.864 41 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -15.309 -14.503 1.537 21.144 hybrid contribution -0.067 1.451 -0.239 1.472 sum -15.375 -13.052 1.298 20.210 Atomic orbital electron populations 1.23754 0.73339 1.06342 1.03292 1.86654 1.25763 1.30572 1.82623 1.20397 0.86919 0.82348 0.72850 1.90890 1.65733 1.36521 1.45723 1.21484 0.92846 0.91910 1.02345 1.24175 0.89961 0.98813 0.90877 1.68628 1.07123 1.30199 1.07704 1.22604 0.95663 0.91782 0.97869 1.17795 0.85357 0.84147 0.77584 1.90789 1.65288 1.35095 1.51723 1.46338 1.08618 1.08240 1.70724 1.19968 0.78047 0.93132 1.02062 1.19195 1.15466 0.95578 0.93005 1.20777 0.98360 0.94076 0.96772 1.21264 1.07942 0.94054 0.97957 1.18026 0.88228 0.93446 0.92023 1.19917 1.34201 0.95418 1.02885 0.90589 1.26754 0.93767 1.03452 0.94027 1.69872 1.24305 1.38936 1.11264 0.85181 0.78899 0.76450 0.79352 1.18195 1.18916 1.19088 1.21161 1.12264 0.96263 0.96665 1.20704 0.97243 0.93761 0.96801 1.24162 0.89743 0.99091 0.91970 1.68655 1.06815 1.29671 1.05899 0.84741 0.91071 0.91119 0.77223 0.74958 0.90710 0.91203 0.87584 0.88168 0.90034 0.88444 0.86438 0.77191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 113.37 1.20 1.44 16 2 O -0.34 -5.89 10.39 -55.69 -0.58 -6.47 16 3 C 0.53 10.46 7.96 70.48 0.56 11.02 16 4 O -0.50 -11.03 16.13 20.12 0.32 -10.70 16 5 C 0.05 1.11 6.76 41.98 0.28 1.39 16 6 C 0.12 2.42 10.77 85.05 0.92 3.34 16 7 N -0.42 -9.78 9.70 -183.29 -1.78 -11.56 16 8 C 0.06 1.50 6.76 42.00 0.28 1.78 16 9 C 0.57 15.82 7.82 86.93 0.68 16.50 16 10 O -0.55 -17.27 16.34 -3.70 -0.06 -17.33 16 11 N -0.69 -20.23 5.54 -469.26 -2.60 -22.83 16 12 C 0.19 6.00 5.79 85.63 0.50 6.50 16 13 C -0.23 -8.88 5.27 -19.68 -0.10 -8.99 16 14 C -0.08 -3.49 9.67 22.22 0.21 -3.27 16 15 C -0.19 -9.70 8.70 22.73 0.20 -9.50 16 16 C 0.09 4.44 5.57 -21.29 -0.12 4.32 16 17 C -0.50 -25.98 9.05 23.46 0.21 -25.76 16 18 H 0.08 3.87 7.91 -2.91 -0.02 3.84 16 19 C 0.04 1.75 5.14 85.26 0.44 2.19 16 20 N -0.82 -41.54 10.95 21.83 0.24 -41.30 16 21 Si 0.98 37.20 29.60 68.60 2.03 39.23 16 22 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 23 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 24 H -0.27 -9.68 7.11 99.48 0.71 -8.97 16 25 C -0.24 -11.38 9.80 22.73 0.22 -11.16 16 26 C -0.07 -2.67 9.67 22.22 0.21 -2.46 16 27 C 0.11 2.28 10.77 85.03 0.92 3.20 16 28 N -0.39 -8.19 10.27 -183.37 -1.88 -10.07 16 29 H 0.13 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.21 3.26 7.64 -2.91 -0.02 3.24 16 33 H 0.41 12.31 7.81 -92.71 -0.72 11.59 16 34 H 0.07 2.25 8.08 -2.39 -0.02 2.24 16 35 H 0.07 2.18 8.08 -2.39 -0.02 2.16 16 36 H 0.11 4.11 8.06 -2.91 -0.02 4.09 16 37 H 0.10 5.34 6.16 -2.91 -0.02 5.32 16 38 H 0.29 13.21 8.30 -92.71 -0.77 12.44 16 39 H 0.10 4.33 8.06 -2.91 -0.02 4.31 16 40 H 0.12 4.02 8.06 -2.91 -0.02 4.00 16 41 H 0.21 3.47 7.64 -2.91 -0.02 3.45 16 Total: -1.00 -61.67 370.51 2.68 -58.99 By element: Atomic # 1 Polarization: 31.14 SS G_CDS: 0.37 Total: 31.52 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: 6.61 Total: -9.47 kcal Atomic # 7 Polarization: -79.74 SS G_CDS: -6.02 Total: -85.76 kcal Atomic # 8 Polarization: -34.19 SS G_CDS: -0.31 Total: -34.50 kcal Atomic # 14 Polarization: 37.20 SS G_CDS: 2.03 Total: 39.23 kcal Total: -61.67 2.68 -58.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412210877.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.042 kcal (2) G-P(sol) polarization free energy of solvation -61.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds