Wall clock time and date at job start Sat Apr 11 2020 06:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46500 * 120.00293 * 2 1 4 4 C 1.52997 * 109.46756 * 269.99680 * 3 2 1 5 5 S 1.81402 * 109.46777 * 180.02562 * 4 3 2 6 6 N 1.65602 * 104.44915 * 179.97438 * 5 4 3 7 7 O 1.42097 * 110.54286 * 291.62005 * 5 4 3 8 8 O 1.42099 * 110.54563 * 68.37662 * 5 4 3 9 9 C 1.34775 * 119.99277 * 179.97438 * 2 1 3 10 10 O 1.21593 * 119.99762 * 180.02562 * 9 2 1 11 11 N 1.34775 * 120.00419 * 0.02562 * 9 2 1 12 12 C 1.46507 * 119.99909 * 179.97438 * 11 9 2 13 13 C 1.50693 * 109.46727 * 179.97438 * 12 11 9 14 14 C 1.38629 * 119.75270 * 269.72327 * 13 12 11 15 15 C 1.37622 * 120.25073 * 179.72445 * 14 13 12 16 16 C 1.40711 * 119.74255 * 0.57160 * 15 14 13 17 17 C 1.41400 * 120.24519 * 179.67986 * 16 15 14 18 18 H 1.07993 * 120.00417 * 204.40825 * 17 16 15 19 19 C 1.39949 * 119.99722 * 24.41101 * 17 16 15 20 20 N 1.30829 * 120.00062 * 17.84366 * 19 17 16 21 21 Si 1.86798 * 120.00043 * 197.84420 * 19 17 16 22 22 H 1.48505 * 109.46835 * 60.00206 * 21 19 17 23 23 H 1.48500 * 109.47096 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47401 * 300.00354 * 21 19 17 25 25 C 1.40712 * 119.51307 * 359.70710 * 16 15 14 26 26 C 1.37613 * 119.74639 * 359.97438 * 25 16 15 27 27 H 1.08996 * 109.47627 * 270.01115 * 1 2 3 28 28 H 1.09007 * 109.46584 * 30.00075 * 1 2 3 29 29 H 1.08996 * 109.47499 * 149.99703 * 1 2 3 30 30 H 1.09004 * 109.46909 * 29.99678 * 3 2 1 31 31 H 1.09004 * 109.47046 * 149.99651 * 3 2 1 32 32 H 1.09004 * 109.47409 * 299.99692 * 4 3 2 33 33 H 1.08995 * 109.47482 * 59.99903 * 4 3 2 34 34 H 0.96998 * 120.00408 * 150.00104 * 6 5 4 35 35 H 0.97002 * 119.99694 * 330.00163 * 6 5 4 36 36 H 0.96996 * 119.99912 * 359.97438 * 11 9 2 37 37 H 1.09001 * 109.46823 * 60.00094 * 12 11 9 38 38 H 1.09000 * 109.46799 * 299.99548 * 12 11 9 39 39 H 1.08007 * 119.87515 * 359.97438 * 14 13 12 40 40 H 1.08002 * 120.12595 * 180.28405 * 15 14 13 41 41 H 0.96994 * 119.99970 * 179.97438 * 20 19 17 42 42 H 1.08000 * 120.12635 * 179.97438 * 25 16 15 43 43 H 1.08000 * 119.87953 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7102 -1.4425 5 16 3.3604 3.2808 -1.4425 6 7 3.5676 3.6382 -3.0461 7 8 2.5390 4.3315 -0.9521 8 8 4.6809 3.0935 -0.9523 9 6 2.1387 -1.1673 0.0005 10 8 3.3547 -1.1674 0.0010 11 7 1.4648 -2.3344 0.0005 12 6 2.1973 -3.6032 0.0005 13 6 1.2179 -4.7485 0.0012 14 6 0.7757 -5.2749 1.2050 15 6 -0.1230 -6.3171 1.2176 16 6 -0.5837 -6.8563 0.0022 17 6 -1.5019 -7.9316 0.0028 18 1 -1.5590 -8.5934 -0.8487 19 6 -2.3367 -8.1383 1.1068 20 7 -2.5302 -7.1745 1.9702 21 14 -3.1748 -9.7902 1.3478 22 1 -2.1458 -10.8538 1.4720 23 1 -3.9991 -9.7517 2.5824 24 1 -4.0461 -10.0783 0.1803 25 6 -0.1235 -6.3179 -1.2137 26 6 0.7700 -5.2714 -1.2023 27 1 -0.3634 0.0002 1.0276 28 1 -0.3633 0.8901 -0.5139 29 1 -0.3634 -0.8899 -0.5138 30 1 1.6085 2.0284 0.5138 31 1 3.1500 1.1383 0.5139 32 1 3.0417 0.9505 -1.9563 33 1 1.5003 1.8406 -1.9564 34 1 3.6172 4.5630 -3.3345 35 1 3.6395 2.9227 -3.6972 36 1 0.4948 -2.3344 0.0005 37 1 2.8239 -3.6610 0.8905 38 1 2.8239 -3.6610 -0.8895 39 1 1.1347 -4.8628 2.1366 40 1 -0.4697 -6.7226 2.1566 41 1 -3.1091 -7.3177 2.7351 42 1 -0.4703 -6.7244 -2.1522 43 1 1.1243 -4.8563 -2.1342 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413871496.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:51 Heat of formation + Delta-G solvation = -81.892765 kcal Electronic energy + Delta-G solvation = -26508.208575 eV Core-core repulsion = 22487.355951 eV Total energy + Delta-G solvation = -4020.852624 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.13180 -37.82538 -37.34031 -36.26802 -36.06407 -34.80521 -33.59200 -33.57333 -31.88946 -30.13859 -29.39881 -27.13412 -26.75162 -24.46097 -23.16364 -21.12624 -20.17745 -19.96017 -19.71669 -18.31441 -17.93082 -17.68503 -17.43810 -16.63785 -16.22155 -15.82834 -15.50538 -15.27657 -14.75037 -14.42402 -14.10959 -14.07238 -13.84289 -13.36213 -13.32244 -12.95854 -12.67389 -12.51868 -12.48184 -12.40110 -12.27497 -12.08861 -12.01024 -11.75511 -11.66763 -11.32890 -11.18754 -11.08902 -10.80648 -10.76909 -10.50934 -10.06384 -9.74868 -9.53156 -9.27270 -9.02739 -8.53356 -7.62440 -7.50725 -6.91817 -4.51396 -0.13531 2.39088 2.50365 2.78717 2.93623 2.98322 3.00303 3.10852 3.22853 3.38017 3.81383 3.94223 4.12337 4.20583 4.46669 4.56566 4.85894 4.89116 5.12334 5.22942 5.44404 5.50477 5.55879 5.58610 5.73415 5.89578 6.17739 6.20808 6.28114 6.31357 6.63629 6.79691 6.82288 6.92617 6.93113 7.13983 7.21929 7.46253 7.68412 7.90682 7.96818 8.10573 8.14862 8.48900 8.70535 8.73868 8.81686 10.02064 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.031091 B = 0.001833 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.361017 B =15271.228344 C =15473.695210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.631 5.631 3 C 0.148 3.852 4 C -0.645 4.645 5 S 2.621 3.379 6 N -1.251 6.251 7 O -0.964 6.964 8 O -0.954 6.954 9 C 0.698 3.302 10 O -0.594 6.594 11 N -0.731 5.731 12 C 0.201 3.799 13 C -0.246 4.246 14 C -0.080 4.080 15 C -0.170 4.170 16 C 0.117 3.883 17 C -0.458 4.458 18 H 0.079 0.921 19 C 0.076 3.924 20 N -0.787 5.787 21 Si 0.910 3.090 22 H -0.262 1.262 23 H -0.278 1.278 24 H -0.265 1.265 25 C -0.230 4.230 26 C -0.069 4.069 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.140 0.860 33 H 0.136 0.864 34 H 0.420 0.580 35 H 0.414 0.586 36 H 0.398 0.602 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.088 0.912 40 H 0.119 0.881 41 H 0.283 0.717 42 H 0.093 0.907 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.303 16.691 -6.457 18.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.370 5.370 3 C 0.022 3.978 4 C -0.776 4.776 5 S 2.711 3.289 6 N -0.923 5.923 7 O -0.954 6.954 8 O -0.943 6.943 9 C 0.399 3.601 10 O -0.473 6.473 11 N -0.386 5.386 12 C 0.079 3.921 13 C -0.248 4.248 14 C -0.099 4.099 15 C -0.189 4.189 16 C 0.114 3.886 17 C -0.487 4.487 18 H 0.097 0.903 19 C -0.143 4.143 20 N -0.412 5.412 21 Si 0.734 3.266 22 H -0.187 1.187 23 H -0.202 1.202 24 H -0.189 1.189 25 C -0.250 4.250 26 C -0.088 4.088 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.110 0.890 31 H 0.119 0.881 32 H 0.158 0.842 33 H 0.154 0.846 34 H 0.249 0.751 35 H 0.240 0.760 36 H 0.234 0.766 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.106 0.894 40 H 0.136 0.864 41 H 0.094 0.906 42 H 0.111 0.889 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.332 17.196 -5.282 18.503 hybrid contribution -1.413 -1.191 -0.777 2.005 sum 2.919 16.004 -6.059 17.360 Atomic orbital electron populations 1.21812 0.79332 1.03317 1.02401 1.46924 1.06402 1.04290 1.79338 1.20827 0.99707 0.86097 0.91178 1.30993 1.15671 1.22758 1.08149 1.04581 0.75449 0.75957 0.72961 1.53206 1.93402 1.17161 1.28569 1.93610 1.70654 1.52463 1.78626 1.93653 1.36169 1.86227 1.78290 1.16091 0.85444 0.80520 0.78039 1.90907 1.11516 1.86311 1.58532 1.45912 1.10283 1.04495 1.77921 1.19846 0.92433 0.79187 1.00664 1.18987 1.08746 1.03238 0.93821 1.20571 0.97196 0.96913 0.95228 1.21318 0.99386 0.99411 0.98776 1.17668 0.89493 0.90488 0.90942 1.19636 1.16226 1.10866 1.01936 0.90284 1.25958 0.95764 0.97874 0.94740 1.69805 1.28986 1.31619 1.10759 0.86333 0.79468 0.82230 0.78552 1.18694 1.20246 1.18921 1.20971 1.05652 1.01339 0.97049 1.20401 0.96755 0.96368 0.95268 0.92078 0.90835 0.90768 0.88980 0.88076 0.84179 0.84566 0.75075 0.75972 0.76625 0.92432 0.92575 0.89363 0.86357 0.90607 0.88915 0.89438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.64 10.20 59.85 0.61 1.25 16 2 N -0.63 -7.35 2.87 -187.35 -0.54 -7.89 16 3 C 0.15 1.45 5.41 -4.04 -0.02 1.43 16 4 C -0.64 -4.62 6.50 37.16 0.24 -4.38 16 5 S 2.62 20.49 5.97 -107.50 -0.64 19.85 16 6 N -1.25 -5.63 9.36 60.35 0.57 -5.07 16 7 O -0.96 -10.26 18.10 -57.54 -1.04 -11.30 16 8 O -0.95 -11.83 18.10 -57.54 -1.04 -12.87 16 9 C 0.70 10.95 8.28 -86.92 -0.72 10.23 16 10 O -0.59 -11.33 15.92 5.28 0.08 -11.25 16 11 N -0.73 -11.45 5.41 -66.41 -0.36 -11.81 16 12 C 0.20 3.56 5.79 -5.19 -0.03 3.53 16 13 C -0.25 -4.93 5.27 -104.33 -0.55 -5.48 16 14 C -0.08 -1.74 9.67 -39.66 -0.38 -2.12 16 15 C -0.17 -4.13 8.70 -38.87 -0.34 -4.47 16 16 C 0.12 2.93 5.57 -106.83 -0.60 2.33 16 17 C -0.46 -11.48 9.05 -37.74 -0.34 -11.82 16 18 H 0.08 1.90 7.91 -52.49 -0.41 1.49 16 19 C 0.08 1.79 5.14 -17.34 -0.09 1.70 16 20 N -0.79 -19.17 10.95 55.55 0.61 -18.56 16 21 Si 0.91 17.70 29.59 -169.99 -5.03 12.66 16 22 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 23 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 24 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 25 C -0.23 -5.28 9.80 -38.88 -0.38 -5.66 16 26 C -0.07 -1.42 9.67 -39.66 -0.38 -1.81 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.44 8.07 -51.92 -0.42 0.03 16 29 H 0.07 0.65 6.36 -51.93 -0.33 0.32 16 30 H 0.09 0.65 8.07 -51.93 -0.42 0.23 16 31 H 0.10 1.14 7.42 -51.93 -0.39 0.76 16 32 H 0.14 1.06 8.14 -51.92 -0.42 0.64 16 33 H 0.14 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.42 1.44 8.96 -34.48 -0.31 1.13 16 35 H 0.41 0.93 8.96 -34.47 -0.31 0.62 16 36 H 0.40 5.75 6.19 -40.82 -0.25 5.49 16 37 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 38 H 0.06 0.99 8.08 -51.93 -0.42 0.58 16 39 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 40 H 0.12 3.00 6.16 -52.49 -0.32 2.68 16 41 H 0.28 6.28 8.30 -40.82 -0.34 5.94 16 42 H 0.09 2.01 8.06 -52.49 -0.42 1.59 16 43 H 0.09 1.61 8.06 -52.49 -0.42 1.18 16 LS Contribution 377.84 15.07 5.69 5.69 Total: -1.00 -34.74 377.84 -10.36 -45.10 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -5.67 Total: 10.69 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: -2.98 Total: -15.25 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: 0.28 Total: -43.33 kcal Atomic # 8 Polarization: -33.42 SS G_CDS: -2.00 Total: -35.42 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -5.03 Total: 12.66 kcal Atomic # 16 Polarization: 20.49 SS G_CDS: -0.64 Total: 19.85 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.74 -10.36 -45.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413871496.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.794 kcal (2) G-P(sol) polarization free energy of solvation -34.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds