Wall clock time and date at job start Sat Apr 11 2020 06:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34713 * 116.99845 * 2 1 4 4 O 1.21471 * 120.00237 * 0.02562 * 3 2 1 5 5 C 1.47815 * 120.00266 * 180.27549 * 3 2 1 6 6 C 1.40039 * 120.11022 * 179.45069 * 5 3 2 7 7 C 1.38373 * 117.97839 * 179.73698 * 6 5 3 8 8 C 1.39485 * 118.03420 * 0.53008 * 7 6 5 9 9 N 1.38986 * 120.03759 * 179.74988 * 8 7 6 10 10 C 1.34771 * 120.00119 * 173.99846 * 9 8 7 11 11 O 1.21264 * 120.00180 * 5.11113 * 10 9 8 12 12 C 1.50708 * 119.99921 * 185.11314 * 10 9 8 13 13 H 1.08998 * 109.46734 * 307.65583 * 12 10 9 14 14 C 1.50701 * 109.47235 * 67.65301 * 12 10 9 15 15 H 1.07997 * 119.99642 * 54.93445 * 14 12 10 16 16 C 1.37871 * 120.00022 * 234.94050 * 14 12 10 17 17 N 1.31515 * 120.00231 * 177.21945 * 16 14 12 18 18 Si 1.86802 * 120.00029 * 357.21238 * 16 14 12 19 19 H 1.48503 * 109.46965 * 84.53261 * 18 16 14 20 20 H 1.48497 * 109.47068 * 204.52860 * 18 16 14 21 21 H 1.48496 * 109.47219 * 324.53209 * 18 16 14 22 22 C 1.50692 * 109.47021 * 187.65593 * 12 10 9 23 23 C 1.38238 * 119.99919 * 292.57184 * 22 12 10 24 24 C 1.38238 * 120.00071 * 179.81212 * 23 22 12 25 25 C 1.38233 * 119.99857 * 0.39527 * 24 23 22 26 26 C 1.38234 * 120.00121 * 359.85630 * 25 24 23 27 27 C 1.38232 * 120.00425 * 112.84831 * 22 12 10 28 28 N 1.32794 * 119.92585 * 359.72236 * 8 7 6 29 29 N 1.28351 * 122.18499 * 0.02562 * 28 8 7 30 30 H 1.08996 * 109.47544 * 59.99545 * 1 2 3 31 31 H 1.08997 * 109.46910 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47217 * 299.99848 * 1 2 3 33 33 H 1.08004 * 121.00944 * 359.97438 * 6 5 3 34 34 H 1.08000 * 120.98393 * 180.27514 * 7 6 5 35 35 H 0.97006 * 119.99726 * 353.99647 * 9 8 7 36 36 H 0.97000 * 120.00195 * 179.97438 * 17 16 14 37 37 H 1.08008 * 120.00087 * 359.97438 * 23 22 12 38 38 H 1.08002 * 119.99936 * 180.22898 * 24 23 22 39 39 H 1.08002 * 120.00061 * 179.83462 * 25 24 23 40 40 H 1.07997 * 120.00183 * 179.97438 * 26 25 24 41 41 H 1.08002 * 119.99815 * 359.97370 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2191 0.0005 5 6 3.5396 1.2778 -0.0062 6 6 4.1777 2.5243 -0.0178 7 6 5.5612 2.5455 -0.0176 8 6 6.2355 1.3244 -0.0172 9 7 7.6251 1.2970 -0.0222 10 6 8.2764 0.1235 0.1002 11 8 7.6533 -0.9165 0.1215 12 6 9.7793 0.1038 0.2107 13 1 10.2116 0.6738 -0.6117 14 6 10.1948 0.7200 1.5218 15 1 9.7941 0.3378 2.4490 16 6 11.0863 1.7716 1.5374 17 7 11.4069 2.3450 2.6768 18 14 11.8390 2.3818 -0.0596 19 1 10.9145 3.3483 -0.7050 20 1 13.1333 3.0510 0.2272 21 1 12.0675 1.2315 -0.9705 22 6 10.2690 -1.3199 0.1472 23 6 9.9785 -2.1972 1.1752 24 6 10.4244 -3.5044 1.1152 25 6 11.1677 -3.9319 0.0310 26 6 11.4627 -3.0532 -0.9946 27 6 11.0136 -1.7471 -0.9363 28 7 5.5483 0.1881 -0.0114 29 7 4.2650 0.1653 -0.0066 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 3.6071 3.4414 -0.0228 34 1 6.1030 3.4797 -0.0218 35 1 8.1261 2.1226 -0.1138 36 1 12.0344 3.0846 2.6878 37 1 9.4009 -1.8622 2.0241 38 1 10.1942 -4.1908 1.9166 39 1 11.5184 -4.9524 -0.0147 40 1 12.0438 -3.3871 -1.8414 41 1 11.2440 -1.0606 -1.7375 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417443812.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:57 Heat of formation + Delta-G solvation = -17.268174 kcal Electronic energy + Delta-G solvation = -28399.842641 eV Core-core repulsion = 24246.348397 eV Total energy + Delta-G solvation = -4153.494243 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.38357 -40.30624 -39.40320 -38.07368 -36.67202 -35.09389 -33.85449 -33.18217 -31.77373 -31.24568 -30.20241 -28.27175 -27.75212 -25.29623 -24.93972 -23.59467 -21.95410 -21.83651 -21.34369 -19.86539 -18.48458 -18.03456 -17.48582 -17.31538 -16.87602 -16.62642 -16.10358 -15.95852 -15.31209 -14.74457 -14.64174 -14.49827 -14.15816 -13.97730 -13.82249 -13.48310 -13.31707 -13.14576 -12.91462 -12.70823 -12.38657 -12.21498 -11.97362 -11.84655 -11.36976 -11.22836 -11.11381 -10.98661 -10.82243 -10.56659 -10.39780 -10.32304 -10.13725 -9.79797 -9.62825 -9.16092 -8.88836 -8.62097 -8.20204 -7.93204 -6.48353 -4.53938 0.34266 0.75466 2.06305 2.13620 2.19695 2.36847 2.92106 2.99626 3.08251 3.11202 3.23889 3.73674 3.97184 4.01793 4.33783 4.51010 4.57210 4.60719 4.80932 4.85249 4.90216 4.98238 5.25771 5.32384 5.48516 5.53146 5.57944 5.67047 5.75530 5.84478 5.86493 6.01879 6.07016 6.23758 6.31548 6.56558 6.64032 6.77098 7.06637 7.10403 7.18458 7.42630 7.47083 7.53086 7.72546 8.05788 8.49456 8.60504 8.80010 9.06633 10.62467 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012458 B = 0.003181 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.090280 B = 8799.684909 C =10407.223137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.333 6.333 3 C 0.540 3.460 4 O -0.505 6.505 5 C -0.027 4.027 6 C -0.032 4.032 7 C -0.167 4.167 8 C 0.342 3.658 9 N -0.640 5.640 10 C 0.514 3.486 11 O -0.477 6.477 12 C 0.035 3.965 13 H 0.070 0.930 14 C -0.514 4.514 15 H 0.086 0.914 16 C 0.084 3.916 17 N -0.875 5.875 18 Si 0.864 3.136 19 H -0.270 1.270 20 H -0.280 1.280 21 H -0.258 1.258 22 C -0.031 4.031 23 C -0.072 4.072 24 C -0.128 4.128 25 C -0.139 4.139 26 C -0.129 4.129 27 C -0.130 4.130 28 N -0.230 5.230 29 N -0.145 5.145 30 H 0.064 0.936 31 H 0.105 0.895 32 H 0.064 0.936 33 H 0.163 0.837 34 H 0.163 0.837 35 H 0.424 0.576 36 H 0.272 0.728 37 H 0.118 0.882 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.813 0.164 -7.126 12.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.248 6.248 3 C 0.382 3.618 4 O -0.392 6.392 5 C -0.173 4.173 6 C -0.060 4.060 7 C -0.200 4.200 8 C 0.104 3.896 9 N -0.285 5.285 10 C 0.303 3.697 11 O -0.345 6.345 12 C 0.013 3.987 13 H 0.088 0.912 14 C -0.551 4.551 15 H 0.104 0.896 16 C -0.122 4.122 17 N -0.509 5.509 18 Si 0.690 3.310 19 H -0.195 1.195 20 H -0.205 1.205 21 H -0.183 1.183 22 C -0.032 4.032 23 C -0.091 4.091 24 C -0.146 4.146 25 C -0.157 4.157 26 C -0.147 4.147 27 C -0.148 4.148 28 N -0.084 5.084 29 N 0.005 4.995 30 H 0.082 0.918 31 H 0.123 0.877 32 H 0.083 0.917 33 H 0.181 0.819 34 H 0.180 0.820 35 H 0.262 0.738 36 H 0.082 0.918 37 H 0.136 0.864 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -11.174 -1.816 -6.967 13.293 hybrid contribution 0.644 2.611 -0.640 2.765 sum -10.530 0.795 -7.608 13.015 Atomic orbital electron populations 1.23353 0.75953 1.04067 1.02557 1.86703 1.23295 1.31508 1.83293 1.20347 0.87314 0.81805 0.72360 1.90846 1.65909 1.36097 1.46369 1.21441 0.92533 0.92792 1.10561 1.22050 0.93961 0.98440 0.91522 1.21913 0.94451 0.98716 1.04875 1.20726 0.87625 0.91847 0.89360 1.43950 1.01561 1.13384 1.69576 1.22288 0.92147 0.81791 0.73497 1.90759 1.68937 1.30994 1.43793 1.18406 0.86792 0.92815 1.00688 0.91239 1.20582 1.27870 1.16232 0.90452 0.89579 1.25076 0.95339 0.95444 0.96358 1.69843 1.32870 1.22719 1.25482 0.87036 0.80210 0.79630 0.84141 1.19520 1.20546 1.18265 1.19806 0.95676 0.94773 0.92972 1.20886 0.97686 0.92447 0.98039 1.21044 0.99197 0.96175 0.98166 1.20903 1.00713 0.98934 0.95157 1.20892 1.01202 0.93913 0.98711 1.20972 1.00108 0.95795 0.97974 1.74057 0.98804 1.21238 1.14336 1.73527 0.99859 1.24572 1.01572 0.91757 0.87711 0.91720 0.81917 0.81985 0.73801 0.91778 0.86357 0.86968 0.87210 0.87138 0.87152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 101.05 1.07 1.36 16 2 O -0.33 -4.33 10.39 -40.53 -0.42 -4.75 16 3 C 0.54 7.47 7.95 34.65 0.28 7.75 16 4 O -0.51 -7.21 16.17 -19.24 -0.31 -7.52 16 5 C -0.03 -0.39 6.83 -82.85 -0.57 -0.96 16 6 C -0.03 -0.38 9.71 -38.86 -0.38 -0.75 16 7 C -0.17 -2.03 10.04 -39.07 -0.39 -2.43 16 8 C 0.34 5.63 7.50 -154.57 -1.16 4.47 16 9 N -0.64 -10.96 5.36 -11.33 -0.06 -11.02 16 10 C 0.51 10.56 6.95 -10.98 -0.08 10.48 16 11 O -0.48 -10.99 13.62 5.57 0.08 -10.91 16 12 C 0.03 0.73 2.23 -94.07 -0.21 0.52 16 13 H 0.07 1.37 4.49 -51.93 -0.23 1.14 16 14 C -0.51 -12.37 8.24 -34.44 -0.28 -12.65 16 15 H 0.09 2.34 7.70 -52.49 -0.40 1.94 16 16 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 17 N -0.87 -23.18 13.96 55.43 0.77 -22.41 16 18 Si 0.86 17.67 26.99 -169.99 -4.59 13.08 16 19 H -0.27 -5.03 7.11 56.52 0.40 -4.62 16 20 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 21 H -0.26 -5.11 6.72 56.52 0.38 -4.73 16 22 C -0.03 -0.66 4.36 -104.63 -0.46 -1.12 16 23 C -0.07 -1.51 8.21 -39.58 -0.33 -1.84 16 24 C -0.13 -2.31 10.05 -39.58 -0.40 -2.71 16 25 C -0.14 -2.31 10.05 -39.58 -0.40 -2.70 16 26 C -0.13 -2.18 10.05 -39.58 -0.40 -2.58 16 27 C -0.13 -2.47 9.67 -39.58 -0.38 -2.86 16 28 N -0.23 -4.43 9.07 31.27 0.28 -4.15 16 29 N -0.15 -2.57 11.30 33.31 0.38 -2.19 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.16 1.48 7.71 -52.48 -0.40 1.07 16 34 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 35 H 0.42 6.12 8.71 -40.82 -0.36 5.77 16 36 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 37 H 0.12 2.58 7.57 -52.48 -0.40 2.18 16 38 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 40 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 41 H 0.11 1.91 7.96 -52.49 -0.42 1.49 16 LS Contribution 364.78 15.07 5.50 5.50 Total: -1.00 -31.65 364.78 -6.88 -38.53 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -4.33 Total: 9.91 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -4.18 Total: -4.07 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: 1.37 Total: -39.77 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.66 Total: -23.18 kcal Atomic # 14 Polarization: 17.67 SS G_CDS: -4.59 Total: 13.08 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.65 -6.88 -38.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417443812.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.259 kcal (2) G-P(sol) polarization free energy of solvation -31.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds