Wall clock time and date at job start Sat Apr 11 2020 06:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34713 * 116.99845 * 2 1 4 4 O 1.21471 * 120.00237 * 0.02562 * 3 2 1 5 5 C 1.47815 * 120.00266 * 180.27549 * 3 2 1 6 6 C 1.40039 * 120.11022 * 179.45069 * 5 3 2 7 7 C 1.38373 * 117.97839 * 179.73698 * 6 5 3 8 8 C 1.39485 * 118.03420 * 0.53008 * 7 6 5 9 9 N 1.38986 * 120.03759 * 179.74988 * 8 7 6 10 10 C 1.34771 * 120.00119 * 173.99846 * 9 8 7 11 11 O 1.21264 * 120.00180 * 5.11113 * 10 9 8 12 12 C 1.50708 * 119.99921 * 185.11314 * 10 9 8 13 13 H 1.08998 * 109.46734 * 307.65583 * 12 10 9 14 14 C 1.50701 * 109.47235 * 67.65301 * 12 10 9 15 15 H 1.07997 * 119.99642 * 54.93445 * 14 12 10 16 16 C 1.37871 * 120.00022 * 234.94050 * 14 12 10 17 17 N 1.31515 * 120.00231 * 177.21945 * 16 14 12 18 18 Si 1.86802 * 120.00029 * 357.21238 * 16 14 12 19 19 H 1.48503 * 109.46965 * 84.53261 * 18 16 14 20 20 H 1.48497 * 109.47068 * 204.52860 * 18 16 14 21 21 H 1.48496 * 109.47219 * 324.53209 * 18 16 14 22 22 C 1.50692 * 109.47021 * 187.65593 * 12 10 9 23 23 C 1.38238 * 119.99919 * 292.57184 * 22 12 10 24 24 C 1.38238 * 120.00071 * 179.81212 * 23 22 12 25 25 C 1.38233 * 119.99857 * 0.39527 * 24 23 22 26 26 C 1.38234 * 120.00121 * 359.85630 * 25 24 23 27 27 C 1.38232 * 120.00425 * 112.84831 * 22 12 10 28 28 N 1.32794 * 119.92585 * 359.72236 * 8 7 6 29 29 N 1.28351 * 122.18499 * 0.02562 * 28 8 7 30 30 H 1.08996 * 109.47544 * 59.99545 * 1 2 3 31 31 H 1.08997 * 109.46910 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47217 * 299.99848 * 1 2 3 33 33 H 1.08004 * 121.00944 * 359.97438 * 6 5 3 34 34 H 1.08000 * 120.98393 * 180.27514 * 7 6 5 35 35 H 0.97006 * 119.99726 * 353.99647 * 9 8 7 36 36 H 0.97000 * 120.00195 * 179.97438 * 17 16 14 37 37 H 1.08008 * 120.00087 * 359.97438 * 23 22 12 38 38 H 1.08002 * 119.99936 * 180.22898 * 24 23 22 39 39 H 1.08002 * 120.00061 * 179.83462 * 25 24 23 40 40 H 1.07997 * 120.00183 * 179.97438 * 26 25 24 41 41 H 1.08002 * 119.99815 * 359.97370 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2191 0.0005 5 6 3.5396 1.2778 -0.0062 6 6 4.1777 2.5243 -0.0178 7 6 5.5612 2.5455 -0.0176 8 6 6.2355 1.3244 -0.0172 9 7 7.6251 1.2970 -0.0222 10 6 8.2764 0.1235 0.1002 11 8 7.6533 -0.9165 0.1215 12 6 9.7793 0.1038 0.2107 13 1 10.2116 0.6738 -0.6117 14 6 10.1948 0.7200 1.5218 15 1 9.7941 0.3378 2.4490 16 6 11.0863 1.7716 1.5374 17 7 11.4069 2.3450 2.6768 18 14 11.8390 2.3818 -0.0596 19 1 10.9145 3.3483 -0.7050 20 1 13.1333 3.0510 0.2272 21 1 12.0675 1.2315 -0.9705 22 6 10.2690 -1.3199 0.1472 23 6 9.9785 -2.1972 1.1752 24 6 10.4244 -3.5044 1.1152 25 6 11.1677 -3.9319 0.0310 26 6 11.4627 -3.0532 -0.9946 27 6 11.0136 -1.7471 -0.9363 28 7 5.5483 0.1881 -0.0114 29 7 4.2650 0.1653 -0.0066 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 3.6071 3.4414 -0.0228 34 1 6.1030 3.4797 -0.0218 35 1 8.1261 2.1226 -0.1138 36 1 12.0344 3.0846 2.6878 37 1 9.4009 -1.8622 2.0241 38 1 10.1942 -4.1908 1.9166 39 1 11.5184 -4.9524 -0.0147 40 1 12.0438 -3.3871 -1.8414 41 1 11.2440 -1.0606 -1.7375 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417443812.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:56 Heat of formation + Delta-G solvation = -37.333063 kcal Electronic energy + Delta-G solvation = -28400.712720 eV Core-core repulsion = 24246.348397 eV Total energy + Delta-G solvation = -4154.364322 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.58569 -41.46712 -40.79835 -39.49415 -37.69237 -36.49520 -35.58463 -34.30530 -33.46744 -32.50556 -31.62914 -29.64221 -28.77250 -26.45397 -26.30797 -25.15001 -23.39111 -22.96123 -22.69377 -21.31005 -19.63606 -19.38455 -19.04670 -18.65879 -18.07893 -17.63550 -17.52358 -17.31961 -16.63920 -16.27421 -15.94453 -15.69015 -15.54655 -15.19207 -15.09960 -14.80271 -14.53585 -14.39819 -14.29990 -14.13100 -13.75845 -13.46729 -13.26025 -12.99442 -12.85134 -12.75836 -12.52269 -12.05136 -11.94149 -11.90960 -11.86585 -11.70981 -11.47910 -11.41374 -11.07339 -10.82651 -10.48495 -9.95065 -9.64057 -9.40446 -8.35723 -6.47786 -0.81176 -0.31363 0.62732 0.69285 1.04719 1.34887 1.38465 1.44233 1.51537 1.66465 1.84296 2.30169 2.50092 2.82545 2.95229 3.13412 3.24854 3.50624 3.65411 3.78842 4.03193 4.11202 4.19250 4.25386 4.32724 4.33900 4.38538 4.40863 4.45998 4.64814 4.71323 4.77123 4.81910 4.87956 5.09707 5.15074 5.28404 5.31719 5.36719 5.69804 5.74301 5.92187 6.11443 6.20567 6.33295 6.43494 6.56861 7.09887 7.17271 7.53128 8.78976 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012458 B = 0.003181 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.090280 B = 8799.684909 C =10407.223137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.350 6.350 3 C 0.542 3.458 4 O -0.509 6.509 5 C -0.026 4.026 6 C -0.022 4.022 7 C -0.140 4.140 8 C 0.317 3.683 9 N -0.635 5.635 10 C 0.515 3.485 11 O -0.511 6.511 12 C 0.040 3.960 13 H 0.087 0.913 14 C -0.510 4.510 15 H 0.032 0.968 16 C 0.036 3.964 17 N -0.927 5.927 18 Si 0.923 3.077 19 H -0.232 1.232 20 H -0.289 1.289 21 H -0.244 1.244 22 C -0.061 4.061 23 C -0.104 4.104 24 C -0.135 4.135 25 C -0.134 4.134 26 C -0.124 4.124 27 C -0.143 4.143 28 N -0.278 5.278 29 N -0.181 5.181 30 H 0.073 0.927 31 H 0.130 0.870 32 H 0.070 0.930 33 H 0.201 0.799 34 H 0.208 0.792 35 H 0.436 0.564 36 H 0.274 0.726 37 H 0.086 0.914 38 H 0.131 0.869 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.916 1.055 -9.904 14.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.265 6.265 3 C 0.384 3.616 4 O -0.397 6.397 5 C -0.174 4.174 6 C -0.050 4.050 7 C -0.172 4.172 8 C 0.080 3.920 9 N -0.282 5.282 10 C 0.304 3.696 11 O -0.382 6.382 12 C 0.018 3.982 13 H 0.105 0.895 14 C -0.547 4.547 15 H 0.051 0.949 16 C -0.165 4.165 17 N -0.564 5.564 18 Si 0.745 3.255 19 H -0.155 1.155 20 H -0.215 1.215 21 H -0.168 1.168 22 C -0.062 4.062 23 C -0.122 4.122 24 C -0.153 4.153 25 C -0.151 4.151 26 C -0.142 4.142 27 C -0.161 4.161 28 N -0.130 5.130 29 N -0.029 5.029 30 H 0.091 0.909 31 H 0.148 0.852 32 H 0.089 0.911 33 H 0.218 0.782 34 H 0.225 0.775 35 H 0.276 0.724 36 H 0.083 0.917 37 H 0.104 0.896 38 H 0.149 0.851 39 H 0.167 0.833 40 H 0.168 0.832 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.332 -0.933 -9.759 14.984 hybrid contribution 0.484 2.251 0.304 2.323 sum -10.848 1.319 -9.455 14.451 Atomic orbital electron populations 1.23714 0.73508 1.06123 1.03296 1.86689 1.25792 1.31168 1.82851 1.20222 0.87001 0.82074 0.72300 1.90836 1.65886 1.36185 1.46746 1.21882 0.93146 0.93432 1.08908 1.22480 0.93948 0.98618 0.89905 1.22366 0.94526 0.98586 1.01688 1.20927 0.87140 0.93061 0.90868 1.43617 1.02202 1.12730 1.69611 1.22084 0.92005 0.82380 0.73149 1.90734 1.69450 1.32444 1.45526 1.18319 0.87340 0.93281 0.99244 0.89520 1.20437 1.27855 1.16347 0.90091 0.94922 1.25882 0.95370 0.95240 1.00012 1.69999 1.34218 1.23849 1.28352 0.86080 0.79416 0.80152 0.79888 1.15462 1.21493 1.16818 1.19942 0.97183 0.94845 0.94237 1.20837 0.99242 0.94345 0.97801 1.21335 0.99133 0.95222 0.99645 1.21363 0.99111 1.00758 0.93916 1.21378 1.00218 0.92886 0.99689 1.21273 0.99776 0.97414 0.97670 1.73880 0.99727 1.23560 1.15868 1.73442 0.99550 1.26297 1.03654 0.90870 0.85156 0.91092 0.78188 0.77466 0.72354 0.91707 0.89609 0.85118 0.83301 0.83198 0.85353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 113.37 1.20 1.60 16 2 O -0.35 -8.89 10.39 -56.23 -0.58 -9.47 16 3 C 0.54 14.44 7.95 70.36 0.56 15.00 16 4 O -0.51 -13.52 16.17 19.93 0.32 -13.20 16 5 C -0.03 -0.74 6.83 41.97 0.29 -0.45 16 6 C -0.02 -0.46 9.71 22.74 0.22 -0.24 16 7 C -0.14 -3.06 10.04 22.60 0.23 -2.83 16 8 C 0.32 10.43 7.50 133.04 1.00 11.42 16 9 N -0.64 -21.88 5.36 -308.14 -1.65 -23.53 16 10 C 0.52 22.00 6.95 87.66 0.61 22.61 16 11 O -0.51 -24.96 13.62 -2.98 -0.04 -25.00 16 12 C 0.04 1.72 2.23 -13.03 -0.03 1.69 16 13 H 0.09 3.34 4.49 -2.39 -0.01 3.33 16 14 C -0.51 -25.86 8.24 25.60 0.21 -25.65 16 15 H 0.03 1.95 7.70 -2.91 -0.02 1.93 16 16 C 0.04 1.80 5.47 84.65 0.46 2.26 16 17 N -0.93 -51.10 13.96 21.45 0.30 -50.80 16 18 Si 0.92 35.36 26.99 68.60 1.85 37.22 16 19 H -0.23 -7.45 7.11 99.48 0.71 -6.74 16 20 H -0.29 -11.49 7.11 99.48 0.71 -10.78 16 21 H -0.24 -8.77 6.72 99.48 0.67 -8.10 16 22 C -0.06 -2.64 4.36 -19.87 -0.09 -2.73 16 23 C -0.10 -4.59 8.21 22.27 0.18 -4.41 16 24 C -0.14 -4.92 10.05 22.27 0.22 -4.70 16 25 C -0.13 -4.11 10.05 22.27 0.22 -3.89 16 26 C -0.12 -3.83 10.05 22.27 0.22 -3.60 16 27 C -0.14 -5.23 9.67 22.27 0.22 -5.02 16 28 N -0.28 -11.08 9.07 -54.97 -0.50 -11.58 16 29 N -0.18 -6.58 11.30 -48.53 -0.55 -7.13 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.20 2.76 7.71 -2.91 -0.02 2.73 16 34 H 0.21 2.53 8.06 -2.91 -0.02 2.51 16 35 H 0.44 12.14 8.71 -92.70 -0.81 11.34 16 36 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 37 H 0.09 4.20 7.57 -2.91 -0.02 4.18 16 38 H 0.13 4.08 8.06 -2.91 -0.02 4.06 16 39 H 0.15 3.40 8.06 -2.91 -0.02 3.37 16 40 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 41 H 0.13 4.11 7.96 -2.91 -0.02 4.08 16 Total: -1.00 -75.75 364.78 5.13 -70.63 By element: Atomic # 1 Polarization: 31.55 SS G_CDS: 0.25 Total: 31.80 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: 5.73 Total: 1.07 kcal Atomic # 7 Polarization: -90.65 SS G_CDS: -2.40 Total: -93.05 kcal Atomic # 8 Polarization: -47.36 SS G_CDS: -0.30 Total: -47.67 kcal Atomic # 14 Polarization: 35.36 SS G_CDS: 1.85 Total: 37.22 kcal Total: -75.75 5.13 -70.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417443812.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.294 kcal (2) G-P(sol) polarization free energy of solvation -75.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds