Wall clock time and date at job start Sat Apr 11 2020 06:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35738 * 116.99900 * 2 1 4 4 C 1.39167 * 119.75345 * 0.02584 * 3 2 1 5 5 C 1.36738 * 120.43224 * 180.02562 * 4 3 2 6 6 C 1.39573 * 119.70209 * 0.03334 * 5 4 3 7 7 C 1.40739 * 120.09694 * 359.90775 * 6 5 4 8 8 C 1.38126 * 119.58700 * 0.08834 * 7 6 5 9 9 O 1.35557 * 119.09095 * 180.02562 * 7 6 5 10 10 C 1.42809 * 117.28158 * 326.06392 * 9 7 6 11 11 C 1.50649 * 110.47139 * 48.29488 * 10 9 7 12 12 C 1.41783 * 120.14372 * 148.52788 * 11 10 9 13 13 O 1.21772 * 120.00477 * 179.72369 * 12 11 10 14 14 N 1.34784 * 119.99823 * 359.97438 * 12 11 10 15 15 C 1.40508 * 120.00081 * 179.72750 * 14 12 11 16 16 C 1.40674 * 126.08630 * 359.69598 * 15 14 12 17 17 N 1.30905 * 108.38732 * 179.81728 * 16 15 14 18 18 N 1.40072 * 108.41266 * 0.43543 * 17 16 15 19 19 C 1.37305 * 126.06542 * 179.69821 * 18 17 16 20 20 H 1.07999 * 120.00162 * 180.02562 * 19 18 17 21 21 C 1.38989 * 120.00220 * 0.02562 * 19 18 17 22 22 N 1.31299 * 120.00098 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00204 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46977 * 60.00135 * 23 21 19 25 25 H 1.48497 * 109.47301 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47380 * 300.00433 * 23 21 19 27 27 C 1.35706 * 126.08775 * 180.02562 * 15 14 12 28 28 C 1.35764 * 119.71874 * 328.79441 * 11 10 9 29 29 H 1.09000 * 109.46643 * 59.99832 * 1 2 3 30 30 H 1.08994 * 109.47453 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46773 * 300.00182 * 1 2 3 32 32 H 1.08009 * 119.77966 * 0.02562 * 4 3 2 33 33 H 1.08008 * 120.14860 * 180.02562 * 5 4 3 34 34 H 1.08001 * 120.16255 * 179.97438 * 8 7 6 35 35 H 1.08995 * 109.30288 * 287.98251 * 10 9 7 36 36 H 1.09005 * 109.30011 * 168.59727 * 10 9 7 37 37 H 0.97005 * 119.99846 * 359.72793 * 14 12 11 38 38 H 1.08004 * 125.80398 * 359.97091 * 16 15 14 39 39 H 0.96994 * 119.99638 * 179.97438 * 22 21 19 40 40 H 1.07999 * 126.24533 * 359.97438 * 27 15 14 41 41 H 1.07998 * 121.05704 * 180.61546 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.2823 2.3733 0.0005 5 6 1.8886 3.5989 0.0000 6 6 3.2819 3.6813 -0.0018 7 6 4.0582 2.5074 -0.0011 8 6 3.4326 1.2760 -0.0005 9 8 5.4098 2.6111 -0.0023 10 6 5.9813 3.7103 -0.7126 11 6 5.2883 4.9953 -0.3410 12 6 6.0067 6.2177 -0.3417 13 8 5.4428 7.2555 -0.0458 14 7 7.3126 6.2316 -0.6748 15 6 8.0232 7.4438 -0.6810 16 6 7.5007 8.7121 -0.3690 17 7 8.4619 9.5936 -0.4813 18 7 9.6288 8.9278 -0.8775 19 6 10.8519 9.5079 -1.1075 20 1 11.6900 8.8983 -1.4115 21 6 11.0115 10.8795 -0.9491 22 7 9.9927 11.6205 -0.5790 23 14 12.6756 11.6684 -1.2614 24 1 13.0855 11.4195 -2.6669 25 1 12.5822 13.1314 -1.0242 26 1 13.6823 11.0815 -0.3410 27 6 9.3341 7.6003 -0.9952 28 6 3.9743 4.9771 -0.0002 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.2042 2.3080 0.0014 33 1 1.2920 4.4993 0.0009 34 1 4.0193 0.3692 -0.0003 35 1 5.8759 3.5408 -1.7841 36 1 7.0402 3.7875 -0.4655 37 1 7.7620 5.4048 -0.9102 38 1 6.4807 8.9223 -0.0828 39 1 10.1042 12.5776 -0.4682 40 1 10.0192 6.8173 -1.2849 41 1 3.4536 5.8867 0.2604 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001442392505.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:15 Heat of formation + Delta-G solvation = 31.751695 kcal Electronic energy + Delta-G solvation = -27614.525368 eV Core-core repulsion = 23463.156786 eV Total energy + Delta-G solvation = -4151.368582 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.24341 -40.12504 -39.59462 -38.57670 -36.84719 -34.33789 -34.04605 -33.16042 -31.09003 -30.57587 -30.11466 -28.02897 -27.50181 -26.07730 -25.12388 -23.87626 -22.97156 -21.54925 -20.76587 -19.53446 -19.08194 -18.64155 -17.65223 -17.42144 -16.73407 -16.42967 -16.13135 -15.92194 -15.48803 -15.36773 -15.02562 -14.92632 -14.47062 -14.18563 -13.88563 -13.71529 -13.51217 -13.16338 -13.02152 -12.91455 -12.83625 -12.31516 -12.02913 -11.73895 -11.67178 -11.49293 -11.41398 -11.24072 -10.98461 -10.84680 -10.55791 -10.20846 -9.83426 -9.28832 -9.16289 -8.96975 -8.80589 -8.06957 -7.97270 -6.68392 -6.55537 -4.22120 0.28664 0.99322 1.71032 2.53133 2.95698 3.05039 3.09186 3.16021 3.40955 3.47603 3.64430 3.80358 3.89997 4.30694 4.35649 4.46600 4.51414 4.58541 4.61473 4.70251 4.75320 4.87915 4.90924 5.02254 5.02546 5.06291 5.15954 5.41564 5.55509 5.70867 5.78769 5.84892 5.99957 6.13572 6.25430 6.33569 6.48721 6.86745 6.90593 6.96169 7.04330 7.12000 7.24095 7.85906 8.16163 8.27662 8.62574 8.83321 9.37904 9.67225 10.40359 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.047164 B = 0.001830 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.530455 B =15299.579387 C =15839.170710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.313 6.313 3 C 0.170 3.830 4 C -0.239 4.239 5 C -0.018 4.018 6 C -0.182 4.182 7 C 0.181 3.819 8 C -0.183 4.183 9 O -0.303 6.303 10 C 0.109 3.891 11 C -0.228 4.228 12 C 0.545 3.455 13 O -0.539 6.539 14 N -0.619 5.619 15 C -0.061 4.061 16 C -0.030 4.030 17 N -0.261 5.261 18 N -0.141 5.141 19 C -0.323 4.323 20 H 0.116 0.884 21 C 0.046 3.954 22 N -0.769 5.769 23 Si 0.935 3.065 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.267 1.267 27 C -0.084 4.084 28 C 0.004 3.996 29 H 0.058 0.942 30 H 0.102 0.898 31 H 0.059 0.941 32 H 0.134 0.866 33 H 0.137 0.863 34 H 0.144 0.856 35 H 0.077 0.923 36 H 0.117 0.883 37 H 0.394 0.606 38 H 0.177 0.823 39 H 0.275 0.725 40 H 0.146 0.854 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.218 -21.141 -0.647 26.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.225 6.225 3 C 0.124 3.876 4 C -0.257 4.257 5 C -0.037 4.037 6 C -0.183 4.183 7 C 0.135 3.865 8 C -0.202 4.202 9 O -0.216 6.216 10 C 0.034 3.966 11 C -0.232 4.232 12 C 0.335 3.665 13 O -0.419 6.419 14 N -0.261 5.261 15 C -0.167 4.167 16 C -0.205 4.205 17 N -0.092 5.092 18 N 0.091 4.909 19 C -0.455 4.455 20 H 0.134 0.866 21 C -0.171 4.171 22 N -0.396 5.396 23 Si 0.759 3.241 24 H -0.192 1.192 25 H -0.201 1.201 26 H -0.192 1.192 27 C -0.235 4.235 28 C -0.016 4.016 29 H 0.077 0.923 30 H 0.120 0.880 31 H 0.077 0.923 32 H 0.151 0.849 33 H 0.155 0.845 34 H 0.161 0.839 35 H 0.095 0.905 36 H 0.135 0.865 37 H 0.228 0.772 38 H 0.193 0.807 39 H 0.086 0.914 40 H 0.163 0.837 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -15.098 -19.237 -0.206 24.455 hybrid contribution 0.503 -0.693 -0.383 0.938 sum -14.595 -19.930 -0.589 24.709 Atomic orbital electron populations 1.23134 0.77798 1.04232 1.01738 1.86037 1.21836 1.26753 1.87907 1.18824 0.91352 0.84296 0.93129 1.20909 1.00394 0.91996 1.12437 1.20628 0.92522 0.97702 0.92816 1.19118 0.94025 0.92617 1.12517 1.18650 0.82847 0.92133 0.92864 1.19547 0.91390 0.96968 1.12288 1.85952 1.16935 1.47829 1.70933 1.21724 0.97177 0.81507 0.96171 1.21438 0.96186 0.95498 1.10047 1.16358 0.81785 0.88492 0.79902 1.90726 1.68372 1.33409 1.49372 1.42528 1.09378 1.08552 1.65642 1.17265 0.91818 0.86050 1.21545 1.24136 1.00173 0.89216 1.07021 1.78260 0.89879 1.18319 1.22746 1.44542 1.07607 1.02559 1.36172 1.19834 0.84959 0.92389 1.48364 0.86634 1.25647 0.99533 0.96385 0.95553 1.70209 1.29770 1.06513 1.33091 0.85891 0.80395 0.78373 0.79462 1.19156 1.20126 1.19156 1.21262 0.95519 0.88547 1.18201 1.22306 0.92643 0.95934 0.90703 0.92289 0.87994 0.92272 0.84856 0.84530 0.83864 0.90459 0.86498 0.77162 0.80655 0.91391 0.83670 0.83182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 9.80 101.05 0.99 1.10 16 2 O -0.31 -2.63 10.48 -18.92 -0.20 -2.83 16 3 C 0.17 1.60 6.69 -39.00 -0.26 1.34 16 4 C -0.24 -1.96 8.96 -39.78 -0.36 -2.31 16 5 C -0.02 -0.17 9.80 -39.63 -0.39 -0.56 16 6 C -0.18 -2.10 5.80 -104.94 -0.61 -2.70 16 7 C 0.18 2.13 6.46 -38.68 -0.25 1.88 16 8 C -0.18 -1.91 9.95 -39.38 -0.39 -2.30 16 9 O -0.30 -3.68 10.40 -18.37 -0.19 -3.87 16 10 C 0.11 1.21 6.52 35.98 0.23 1.44 16 11 C -0.23 -3.21 5.83 -104.18 -0.61 -3.82 16 12 C 0.55 9.89 7.52 -14.90 -0.11 9.78 16 13 O -0.54 -11.77 13.31 5.12 0.07 -11.70 16 14 N -0.62 -11.17 5.39 -12.56 -0.07 -11.24 16 15 C -0.06 -1.42 6.90 -83.86 -0.58 -2.00 16 16 C -0.03 -0.80 10.85 -17.03 -0.18 -0.98 16 17 N -0.26 -7.66 10.39 30.81 0.32 -7.34 16 18 N -0.14 -3.90 3.74 -11.41 -0.04 -3.94 16 19 C -0.32 -8.57 10.25 -14.82 -0.15 -8.73 16 20 H 0.12 2.72 7.83 -52.49 -0.41 2.31 16 21 C 0.05 1.19 5.50 -17.50 -0.10 1.10 16 22 N -0.77 -21.59 11.81 55.50 0.66 -20.93 16 23 Si 0.94 18.94 29.55 -169.99 -5.02 13.92 16 24 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 25 H -0.28 -5.55 7.11 56.52 0.40 -5.14 16 26 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 27 C -0.08 -1.99 11.49 -16.38 -0.19 -2.18 16 28 C 0.00 0.06 9.56 -36.95 -0.35 -0.30 16 29 H 0.06 0.20 7.64 -51.93 -0.40 -0.19 16 30 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.21 7.64 -51.93 -0.40 -0.19 16 32 H 0.13 0.74 6.24 -52.48 -0.33 0.41 16 33 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 34 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.12 1.09 6.50 -51.93 -0.34 0.75 16 37 H 0.39 5.42 6.74 -40.82 -0.28 5.15 16 38 H 0.18 4.64 5.91 -52.48 -0.31 4.33 16 39 H 0.28 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.15 2.83 8.06 -52.49 -0.42 2.41 16 41 H 0.15 1.95 7.54 -52.49 -0.40 1.55 16 LS Contribution 353.10 15.07 5.32 5.32 Total: -1.00 -35.26 353.10 -6.56 -41.82 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -4.10 Total: 10.03 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -3.30 Total: -9.24 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: 0.87 Total: -43.45 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.32 Total: -18.40 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.02 Total: 13.92 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.26 -6.56 -41.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442392505.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.573 kcal (2) G-P(sol) polarization free energy of solvation -35.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds