Wall clock time and date at job start Sat Apr 11 2020 06:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35738 * 116.99900 * 2 1 4 4 C 1.39167 * 119.75345 * 0.02584 * 3 2 1 5 5 C 1.36738 * 120.43224 * 180.02562 * 4 3 2 6 6 C 1.39573 * 119.70209 * 0.03334 * 5 4 3 7 7 C 1.40739 * 120.09694 * 359.90775 * 6 5 4 8 8 C 1.38126 * 119.58700 * 0.08834 * 7 6 5 9 9 O 1.35557 * 119.09095 * 180.02562 * 7 6 5 10 10 C 1.42809 * 117.28158 * 326.06392 * 9 7 6 11 11 C 1.50649 * 110.47139 * 48.29488 * 10 9 7 12 12 C 1.41783 * 120.14372 * 148.52788 * 11 10 9 13 13 O 1.21772 * 120.00477 * 179.72369 * 12 11 10 14 14 N 1.34784 * 119.99823 * 359.97438 * 12 11 10 15 15 C 1.40508 * 120.00081 * 179.72750 * 14 12 11 16 16 C 1.40674 * 126.08630 * 359.69598 * 15 14 12 17 17 N 1.30905 * 108.38732 * 179.81728 * 16 15 14 18 18 N 1.40072 * 108.41266 * 0.43543 * 17 16 15 19 19 C 1.37305 * 126.06542 * 179.69821 * 18 17 16 20 20 H 1.07999 * 120.00162 * 180.02562 * 19 18 17 21 21 C 1.38989 * 120.00220 * 0.02562 * 19 18 17 22 22 N 1.31299 * 120.00098 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00204 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46977 * 60.00135 * 23 21 19 25 25 H 1.48497 * 109.47301 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47380 * 300.00433 * 23 21 19 27 27 C 1.35706 * 126.08775 * 180.02562 * 15 14 12 28 28 C 1.35764 * 119.71874 * 328.79441 * 11 10 9 29 29 H 1.09000 * 109.46643 * 59.99832 * 1 2 3 30 30 H 1.08994 * 109.47453 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46773 * 300.00182 * 1 2 3 32 32 H 1.08009 * 119.77966 * 0.02562 * 4 3 2 33 33 H 1.08008 * 120.14860 * 180.02562 * 5 4 3 34 34 H 1.08001 * 120.16255 * 179.97438 * 8 7 6 35 35 H 1.08995 * 109.30288 * 287.98251 * 10 9 7 36 36 H 1.09005 * 109.30011 * 168.59727 * 10 9 7 37 37 H 0.97005 * 119.99846 * 359.72793 * 14 12 11 38 38 H 1.08004 * 125.80398 * 359.97091 * 16 15 14 39 39 H 0.96994 * 119.99638 * 179.97438 * 22 21 19 40 40 H 1.07999 * 126.24533 * 359.97438 * 27 15 14 41 41 H 1.07998 * 121.05704 * 180.61546 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.2823 2.3733 0.0005 5 6 1.8886 3.5989 0.0000 6 6 3.2819 3.6813 -0.0018 7 6 4.0582 2.5074 -0.0011 8 6 3.4326 1.2760 -0.0005 9 8 5.4098 2.6111 -0.0023 10 6 5.9813 3.7103 -0.7126 11 6 5.2883 4.9953 -0.3410 12 6 6.0067 6.2177 -0.3417 13 8 5.4428 7.2555 -0.0458 14 7 7.3126 6.2316 -0.6748 15 6 8.0232 7.4438 -0.6810 16 6 7.5007 8.7121 -0.3690 17 7 8.4619 9.5936 -0.4813 18 7 9.6288 8.9278 -0.8775 19 6 10.8519 9.5079 -1.1075 20 1 11.6900 8.8983 -1.4115 21 6 11.0115 10.8795 -0.9491 22 7 9.9927 11.6205 -0.5790 23 14 12.6756 11.6684 -1.2614 24 1 13.0855 11.4195 -2.6669 25 1 12.5822 13.1314 -1.0242 26 1 13.6823 11.0815 -0.3410 27 6 9.3341 7.6003 -0.9952 28 6 3.9743 4.9771 -0.0002 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.2042 2.3080 0.0014 33 1 1.2920 4.4993 0.0009 34 1 4.0193 0.3692 -0.0003 35 1 5.8759 3.5408 -1.7841 36 1 7.0402 3.7875 -0.4655 37 1 7.7620 5.4048 -0.9102 38 1 6.4807 8.9223 -0.0828 39 1 10.1042 12.5776 -0.4682 40 1 10.0192 6.8173 -1.2849 41 1 3.4536 5.8867 0.2604 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001442392505.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:15 Heat of formation + Delta-G solvation = 7.468798 kcal Electronic energy + Delta-G solvation = -27615.578353 eV Core-core repulsion = 23463.156786 eV Total energy + Delta-G solvation = -4152.421568 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.19056 -41.62127 -40.66892 -39.98066 -37.58571 -36.01556 -35.23083 -34.86472 -32.28852 -31.81874 -31.33237 -29.54814 -28.22840 -26.96217 -26.90069 -25.08127 -23.73627 -22.98280 -22.40233 -21.31650 -20.00258 -19.80026 -19.07260 -18.61520 -17.64687 -17.44605 -17.31268 -16.90000 -16.73405 -16.44222 -16.27639 -16.12211 -15.80778 -15.54820 -15.14006 -15.05251 -14.77633 -14.60281 -14.33427 -13.71123 -13.48875 -13.46575 -13.31148 -13.11358 -12.89436 -12.87494 -12.74500 -12.34577 -12.21160 -12.13265 -11.86419 -11.70682 -11.00972 -10.88661 -10.77496 -10.69868 -10.09999 -9.73178 -8.88335 -8.48612 -8.46526 -6.23735 -0.66032 0.25756 0.74330 1.31240 1.40368 1.56959 1.71470 1.84706 2.06181 2.08856 2.32436 2.51130 2.68660 2.73604 2.93412 3.09743 3.43034 3.58900 3.61847 3.85848 3.95644 4.10169 4.22390 4.36123 4.36710 4.43891 4.44359 4.46439 4.62584 4.75304 4.79410 4.84193 4.93040 5.00481 5.08327 5.14926 5.23477 5.29405 5.34155 5.43801 5.46887 5.95820 6.14994 6.31039 6.32563 6.69053 6.73663 7.32451 7.46578 7.67739 8.52737 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.047164 B = 0.001830 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.530455 B =15299.579387 C =15839.170710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.326 6.326 3 C 0.176 3.824 4 C -0.233 4.233 5 C -0.012 4.012 6 C -0.207 4.207 7 C 0.170 3.830 8 C -0.197 4.197 9 O -0.312 6.312 10 C 0.113 3.887 11 C -0.253 4.253 12 C 0.549 3.451 13 O -0.583 6.583 14 N -0.612 5.612 15 C -0.047 4.047 16 C -0.058 4.058 17 N -0.310 5.310 18 N -0.167 5.167 19 C -0.355 4.355 20 H 0.142 0.858 21 C -0.007 4.007 22 N -0.825 5.825 23 Si 1.020 2.980 24 H -0.253 1.253 25 H -0.278 1.278 26 H -0.253 1.253 27 C -0.079 4.079 28 C 0.023 3.977 29 H 0.071 0.929 30 H 0.121 0.879 31 H 0.071 0.929 32 H 0.165 0.835 33 H 0.159 0.841 34 H 0.148 0.852 35 H 0.095 0.905 36 H 0.133 0.867 37 H 0.417 0.583 38 H 0.167 0.833 39 H 0.276 0.724 40 H 0.190 0.810 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.556 -23.976 -1.331 28.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.238 6.238 3 C 0.129 3.871 4 C -0.252 4.252 5 C -0.030 4.030 6 C -0.208 4.208 7 C 0.124 3.876 8 C -0.216 4.216 9 O -0.226 6.226 10 C 0.039 3.961 11 C -0.256 4.256 12 C 0.341 3.659 13 O -0.465 6.465 14 N -0.256 5.256 15 C -0.153 4.153 16 C -0.233 4.233 17 N -0.143 5.143 18 N 0.064 4.936 19 C -0.486 4.486 20 H 0.159 0.841 21 C -0.219 4.219 22 N -0.453 5.453 23 Si 0.839 3.161 24 H -0.177 1.177 25 H -0.203 1.203 26 H -0.177 1.177 27 C -0.230 4.230 28 C 0.003 3.997 29 H 0.090 0.910 30 H 0.139 0.861 31 H 0.089 0.911 32 H 0.183 0.817 33 H 0.176 0.824 34 H 0.166 0.834 35 H 0.113 0.887 36 H 0.151 0.849 37 H 0.256 0.744 38 H 0.184 0.816 39 H 0.086 0.914 40 H 0.207 0.793 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -15.451 -22.157 -0.900 27.028 hybrid contribution 0.272 -0.081 -0.124 0.310 sum -15.179 -22.238 -1.024 26.944 Atomic orbital electron populations 1.23487 0.75560 1.06037 1.02916 1.86038 1.24151 1.26296 1.87364 1.18983 0.91204 0.85192 0.91676 1.21230 1.01940 0.91005 1.10997 1.20941 0.91695 0.99139 0.91252 1.19152 0.95102 0.91525 1.15004 1.18851 0.82749 0.92672 0.93308 1.19699 0.92271 0.96743 1.12905 1.85931 1.17379 1.47917 1.71360 1.21814 0.97481 0.79762 0.97080 1.21253 0.96477 0.94947 1.12934 1.16958 0.81561 0.89264 0.78098 1.90705 1.69218 1.35450 1.51172 1.42412 1.09382 1.07801 1.66045 1.17337 0.91922 0.86808 1.19252 1.24172 0.99733 0.90924 1.08474 1.78151 0.91277 1.20301 1.24529 1.44836 1.07562 1.03827 1.37331 1.20609 0.85441 0.93534 1.49018 0.84052 1.26904 1.03887 0.96680 0.94394 1.70399 1.32791 1.06845 1.35239 0.84639 0.74686 0.76752 0.80037 1.17661 1.20327 1.17732 1.22007 0.96226 0.88278 1.16475 1.22480 0.92453 0.96714 0.88026 0.91011 0.86114 0.91076 0.81744 0.82383 0.83392 0.88666 0.84924 0.74443 0.81587 0.91389 0.79300 0.83763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.80 113.37 1.11 1.18 16 2 O -0.33 -4.60 10.48 -90.62 -0.95 -5.55 16 3 C 0.18 2.88 6.69 22.65 0.15 3.03 16 4 C -0.23 -3.09 8.96 22.14 0.20 -2.89 16 5 C -0.01 -0.20 9.80 22.24 0.22 0.02 16 6 C -0.21 -4.50 5.80 -20.07 -0.12 -4.62 16 7 C 0.17 3.80 6.46 22.85 0.15 3.94 16 8 C -0.20 -3.83 9.95 22.40 0.22 -3.60 16 9 O -0.31 -7.22 10.40 -88.64 -0.92 -8.14 16 10 C 0.11 2.35 6.52 71.22 0.46 2.81 16 11 C -0.25 -7.01 5.83 -19.58 -0.11 -7.13 16 12 C 0.55 20.14 7.52 85.12 0.64 20.78 16 13 O -0.58 -26.49 13.31 -4.58 -0.06 -26.55 16 14 N -0.61 -21.78 5.39 -311.82 -1.68 -23.46 16 15 C -0.05 -2.20 6.90 37.76 0.26 -1.94 16 16 C -0.06 -3.23 10.85 85.43 0.93 -2.31 16 17 N -0.31 -19.07 10.39 -56.45 -0.59 -19.66 16 18 N -0.17 -9.37 3.74 -190.01 -0.71 -10.08 16 19 C -0.36 -18.94 10.25 84.02 0.86 -18.08 16 20 H 0.14 6.48 7.83 -2.91 -0.02 6.46 16 21 C -0.01 -0.37 5.50 84.95 0.47 0.10 16 22 N -0.82 -48.16 11.81 21.66 0.26 -47.91 16 23 Si 1.02 38.80 29.55 68.60 2.03 40.82 16 24 H -0.25 -8.95 7.11 99.48 0.71 -8.24 16 25 H -0.28 -10.51 7.11 99.48 0.71 -9.80 16 26 H -0.25 -9.00 7.11 99.48 0.71 -8.29 16 27 C -0.08 -3.71 11.49 83.38 0.96 -2.75 16 28 C 0.02 0.61 9.56 23.97 0.23 0.84 16 29 H 0.07 0.22 7.64 -2.39 -0.02 0.20 16 30 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.07 0.23 7.64 -2.39 -0.02 0.21 16 32 H 0.17 1.10 6.24 -2.91 -0.02 1.08 16 33 H 0.16 1.77 8.06 -2.91 -0.02 1.74 16 34 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 35 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.13 2.21 6.50 -2.38 -0.02 2.19 16 37 H 0.42 10.74 6.74 -92.70 -0.62 10.11 16 38 H 0.17 9.41 5.91 -2.91 -0.02 9.39 16 39 H 0.28 14.86 8.31 -92.71 -0.77 14.09 16 40 H 0.19 6.86 8.06 -2.91 -0.02 6.84 16 41 H 0.14 3.81 7.54 -2.91 -0.02 3.79 16 Total: -1.00 -81.48 353.10 4.49 -76.99 By element: Atomic # 1 Polarization: 33.66 SS G_CDS: 0.48 Total: 34.14 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: 6.63 Total: -10.61 kcal Atomic # 7 Polarization: -98.39 SS G_CDS: -2.72 Total: -101.11 kcal Atomic # 8 Polarization: -38.30 SS G_CDS: -1.93 Total: -40.24 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.82 kcal Total: -81.48 4.49 -76.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442392505.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.461 kcal (2) G-P(sol) polarization free energy of solvation -81.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds