Wall clock time and date at job start Sat Apr 11 2020 06:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00078 * 2 1 4 4 C 1.53003 * 109.47022 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47142 * 64.99763 * 4 3 2 6 6 C 1.46505 * 120.00459 * 270.00062 * 5 4 3 7 7 C 1.50698 * 109.46875 * 274.36051 * 6 5 4 8 8 H 1.08005 * 120.00241 * 4.95774 * 7 6 5 9 9 C 1.37875 * 119.99686 * 184.95978 * 7 6 5 10 10 N 1.31509 * 120.00456 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 119.99808 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47069 * 89.99886 * 11 9 7 13 13 H 1.48503 * 109.46863 * 209.99789 * 11 9 7 14 14 H 1.48498 * 109.47184 * 330.00032 * 11 9 7 15 15 C 1.34783 * 120.00068 * 90.00139 * 5 4 3 16 16 O 1.21281 * 119.99503 * 354.98900 * 15 5 4 17 17 C 1.50695 * 120.00166 * 174.99455 * 15 5 4 18 18 H 1.09002 * 109.46993 * 334.72269 * 17 15 5 19 19 C 1.53002 * 109.46903 * 214.72448 * 17 15 5 20 20 O 1.42905 * 109.47323 * 64.62235 * 19 17 15 21 21 C 1.50698 * 109.47610 * 94.72439 * 17 15 5 22 22 C 1.38240 * 119.98983 * 240.00493 * 21 17 15 23 23 C 1.38216 * 120.01553 * 179.97438 * 22 21 17 24 24 C 1.38355 * 119.98565 * 0.02562 * 23 22 21 25 25 Cl 1.73596 * 120.01107 * 180.02562 * 24 23 22 26 26 C 1.38352 * 119.97182 * 0.28711 * 24 23 22 27 27 C 1.38220 * 119.98656 * 359.39548 * 26 24 23 28 28 H 1.08994 * 109.47234 * 300.00476 * 1 2 3 29 29 H 1.08999 * 109.46963 * 60.00055 * 1 2 3 30 30 H 1.09000 * 109.47321 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47104 * 60.00124 * 3 2 1 32 32 H 1.08998 * 109.46897 * 299.99495 * 3 2 1 33 33 H 1.09006 * 109.47196 * 305.00008 * 4 3 2 34 34 H 1.09000 * 109.47004 * 184.99697 * 4 3 2 35 35 H 1.09003 * 109.46657 * 34.35584 * 6 5 4 36 36 H 1.08996 * 109.47025 * 154.35814 * 6 5 4 37 37 H 0.97003 * 120.00531 * 180.02562 * 10 9 7 38 38 H 1.09009 * 109.47174 * 184.61899 * 19 17 15 39 39 H 1.08998 * 109.47524 * 304.62047 * 19 17 15 40 40 H 0.96696 * 114.00177 * 184.99787 * 20 19 17 41 41 H 1.08004 * 119.99372 * 359.97438 * 22 21 17 42 42 H 1.07998 * 120.00392 * 180.02562 * 23 22 21 43 43 H 1.08001 * 120.00552 * 179.72331 * 26 24 23 44 44 H 1.07998 * 119.99486 * 180.32655 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5638 -1.2508 6 6 4.1063 -0.8927 -1.3402 7 6 5.4657 -1.3077 -0.8396 8 1 6.1329 -0.5718 -0.4156 9 6 5.8578 -2.6269 -0.9229 10 7 5.0453 -3.5231 -1.4387 11 14 7.5433 -3.1412 -0.3030 12 1 7.4497 -3.5182 1.1303 13 1 8.0265 -4.3041 -1.0902 14 1 8.4934 -2.0104 -0.4564 15 6 4.2634 1.3328 -2.3200 16 8 4.0698 2.5292 -2.2758 17 6 4.8244 0.7058 -3.5703 18 1 5.3382 -0.2205 -3.3131 19 6 5.8129 1.6722 -4.2259 20 8 6.9314 1.8708 -3.3588 21 6 3.7016 0.4078 -4.5302 22 6 3.4699 -0.8919 -4.9404 23 6 2.4399 -1.1659 -5.8204 24 6 1.6411 -0.1391 -6.2912 25 17 0.3469 -0.4827 -7.3959 26 6 1.8776 1.1622 -5.8854 27 6 2.9037 1.4342 -5.0002 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8508 0.5684 0.8427 34 1 3.9785 2.1765 0.0902 35 1 3.3352 -1.3641 -0.7308 36 1 3.9904 -1.2047 -2.3782 37 1 5.3210 -4.4513 -1.4970 38 1 6.1566 1.2540 -5.1722 39 1 5.3206 2.6274 -4.4083 40 1 7.5626 2.5311 -3.6759 41 1 4.0938 -1.6933 -4.5731 42 1 2.2588 -2.1814 -6.1403 43 1 1.2571 1.9648 -6.2561 44 1 3.0851 2.4493 -4.6793 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001443214939.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:07 Heat of formation + Delta-G solvation = -114.982826 kcal Electronic energy + Delta-G solvation = -28825.725901 eV Core-core repulsion = 24769.101926 eV Total energy + Delta-G solvation = -4056.623975 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.123 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.07366 -38.63396 -37.43797 -36.50397 -36.22430 -34.86166 -32.93325 -32.50022 -30.93172 -29.79935 -28.19344 -26.99224 -25.93701 -24.01123 -22.92338 -22.66106 -22.41051 -20.90689 -18.25512 -17.39770 -16.86746 -16.66841 -16.44763 -15.92979 -15.82141 -15.17832 -15.02176 -14.88458 -14.55049 -14.41165 -14.03697 -13.86972 -13.46513 -13.31000 -13.10180 -12.96481 -12.37995 -12.24764 -11.90889 -11.76422 -11.57891 -11.47756 -11.45325 -11.33814 -11.06235 -10.90930 -10.85199 -10.81698 -10.67310 -10.40250 -10.05573 -9.72156 -9.61468 -9.37169 -9.11239 -8.88456 -8.51025 -8.31963 -7.64205 -6.09582 -4.15508 1.21839 1.44766 2.17758 3.28314 3.34067 3.35927 3.42040 3.71063 3.93730 4.19507 4.41209 4.50404 4.91509 5.01032 5.20471 5.24778 5.28324 5.41838 5.44024 5.50576 5.52630 5.59768 5.66475 5.69043 5.70545 5.75202 5.86007 5.86563 5.90067 6.07679 6.14642 6.31733 6.34197 6.41128 6.41796 6.77857 6.87013 6.95456 7.36921 7.51811 7.64998 7.86949 7.93532 8.15960 8.41566 8.87760 9.04643 9.51196 10.96751 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.008366 B = 0.004495 C = 0.004140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3345.977685 B = 6228.179650 C = 6761.885386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.374 6.374 3 C 0.049 3.951 4 C 0.123 3.877 5 N -0.582 5.582 6 C 0.236 3.764 7 C -0.534 4.534 8 H 0.061 0.939 9 C 0.066 3.934 10 N -0.892 5.892 11 Si 0.893 3.107 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.272 1.272 15 C 0.537 3.463 16 O -0.577 6.577 17 C -0.075 4.075 18 H 0.130 0.870 19 C 0.101 3.899 20 O -0.560 6.560 21 C -0.061 4.061 22 C -0.082 4.082 23 C -0.110 4.110 24 C -0.036 4.036 25 Cl -0.083 7.083 26 C -0.116 4.116 27 C -0.096 4.096 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.082 0.918 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.046 0.954 36 H 0.041 0.959 37 H 0.263 0.737 38 H 0.049 0.951 39 H 0.054 0.946 40 H 0.374 0.626 41 H 0.145 0.855 42 H 0.134 0.866 43 H 0.129 0.871 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.146 7.803 -7.402 12.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.293 6.293 3 C -0.029 4.029 4 C -0.001 4.001 5 N -0.311 5.311 6 C 0.116 3.884 7 C -0.572 4.572 8 H 0.079 0.921 9 C -0.137 4.137 10 N -0.530 5.530 11 Si 0.720 3.280 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.197 1.197 15 C 0.325 3.675 16 O -0.459 6.459 17 C -0.096 4.096 18 H 0.147 0.853 19 C 0.022 3.978 20 O -0.364 6.364 21 C -0.062 4.062 22 C -0.100 4.100 23 C -0.128 4.128 24 C -0.062 4.062 25 Cl -0.054 7.054 26 C -0.135 4.135 27 C -0.114 4.114 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.101 0.899 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.220 0.780 41 H 0.163 0.837 42 H 0.152 0.848 43 H 0.147 0.853 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.585 7.525 -7.140 12.287 hybrid contribution 0.774 0.041 -0.011 0.775 sum -5.811 7.566 -7.151 11.923 Atomic orbital electron populations 1.22669 0.82254 1.02346 0.99099 1.88059 1.18577 1.27441 1.95185 1.23013 0.95355 0.84903 0.99643 1.21323 0.90993 0.99440 0.88351 1.48104 1.63044 1.09989 1.09931 1.19558 0.97316 0.72737 0.98779 1.21547 1.00839 0.93694 1.41152 0.92114 1.24893 0.97312 0.96358 0.95104 1.69928 1.35934 1.02364 1.44802 0.86574 0.84360 0.78199 0.78832 1.20662 1.21195 1.19712 1.19921 0.76890 0.86153 0.84579 1.90542 1.56227 1.15457 1.83651 1.20303 0.94080 1.02781 0.92473 0.85251 1.21925 0.86675 0.97743 0.91430 1.86600 1.35832 1.63924 1.50068 1.19487 0.96365 0.93594 0.96751 1.21297 0.96914 0.96591 0.95203 1.21037 0.95108 0.98667 0.98026 1.20929 0.93056 0.95067 0.97151 1.98346 1.49363 1.95525 1.62153 1.20944 0.98865 0.94819 0.98854 1.21129 0.94272 1.00013 0.95999 0.94771 0.94715 0.89910 0.93379 0.93410 0.89456 0.89655 0.93558 0.94138 0.92705 0.93329 0.92812 0.78018 0.83705 0.84831 0.85259 0.84635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.37 -6.89 9.46 -35.23 -0.33 -7.22 16 3 C 0.05 0.82 6.28 37.16 0.23 1.06 16 4 C 0.12 2.34 5.79 -4.04 -0.02 2.32 16 5 N -0.58 -12.55 2.42 -175.06 -0.42 -12.97 16 6 C 0.24 5.69 4.59 -5.19 -0.02 5.67 16 7 C -0.53 -14.02 8.97 -34.44 -0.31 -14.33 16 8 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 9 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 10 N -0.89 -24.33 13.29 55.43 0.74 -23.59 16 11 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 15 C 0.54 11.18 6.08 -10.99 -0.07 11.12 16 16 O -0.58 -12.44 15.29 5.56 0.08 -12.36 16 17 C -0.08 -1.40 1.81 -92.93 -0.17 -1.57 16 18 H 0.13 2.74 5.92 -51.93 -0.31 2.44 16 19 C 0.10 1.60 5.92 37.16 0.22 1.82 16 20 O -0.56 -9.49 13.40 -35.23 -0.47 -9.97 16 21 C -0.06 -1.01 4.59 -104.62 -0.48 -1.49 16 22 C -0.08 -1.32 8.84 -39.59 -0.35 -1.67 16 23 C -0.11 -1.57 9.83 -39.55 -0.39 -1.96 16 24 C -0.04 -0.49 6.32 -39.50 -0.25 -0.74 16 25 Cl -0.08 -1.01 28.96 -51.86 -1.50 -2.51 16 26 C -0.12 -1.56 9.83 -39.55 -0.39 -1.95 16 27 C -0.10 -1.44 8.85 -39.59 -0.35 -1.79 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.09 1.69 8.07 -51.93 -0.42 1.27 16 34 H 0.09 1.56 7.50 -51.93 -0.39 1.17 16 35 H 0.05 1.22 7.05 -51.93 -0.37 0.85 16 36 H 0.04 0.99 5.07 -51.93 -0.26 0.73 16 37 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 38 H 0.05 0.67 8.14 -51.92 -0.42 0.24 16 39 H 0.05 0.82 7.11 -51.93 -0.37 0.45 16 40 H 0.37 4.21 9.12 45.56 0.42 4.63 16 41 H 0.15 2.45 7.63 -52.48 -0.40 2.05 16 42 H 0.13 1.70 8.06 -52.49 -0.42 1.27 16 43 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 44 H 0.14 2.02 7.15 -52.49 -0.38 1.65 16 LS Contribution 383.56 15.07 5.78 5.78 Total: -1.00 -30.87 383.56 -7.88 -38.75 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -5.40 Total: 8.61 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -1.33 Total: -0.30 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 0.31 Total: -36.57 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -0.72 Total: -29.54 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.50 Total: -2.51 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.87 -7.88 -38.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001443214939.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.232 kcal (2) G-P(sol) polarization free energy of solvation -30.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds