Wall clock time and date at job start Sat Apr 11 2020 06:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 S 1.65600 * 120.00243 * 2 1 4 4 O 1.42101 * 104.27353 * 308.92793 * 3 2 1 5 5 O 1.42095 * 104.27775 * 181.07056 * 3 2 1 6 6 C 1.81398 * 104.44934 * 64.99550 * 3 2 1 7 7 C 1.52997 * 109.47181 * 180.02562 * 6 3 2 8 8 N 1.46505 * 109.47071 * 180.02562 * 7 6 3 9 9 C 1.34784 * 119.99872 * 180.02562 * 8 7 6 10 10 O 1.21584 * 119.99886 * 359.97438 * 9 8 7 11 11 N 1.34771 * 119.99589 * 179.97438 * 9 8 7 12 12 C 1.39949 * 119.99788 * 185.31502 * 11 9 8 13 13 C 1.38861 * 120.06903 * 33.26678 * 12 11 9 14 14 C 1.38116 * 119.93328 * 180.02562 * 13 12 11 15 15 C 1.38287 * 120.06466 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.92484 * 179.97438 * 15 14 13 17 17 C 1.50707 * 109.46870 * 90.01056 * 16 15 14 18 18 H 1.07994 * 120.00129 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99810 * 180.27354 * 17 16 15 20 20 N 1.31512 * 119.99706 * 179.72193 * 19 17 16 21 21 Si 1.86802 * 120.00276 * 359.72145 * 19 17 16 22 22 H 1.48494 * 109.47438 * 89.99785 * 21 19 17 23 23 H 1.48500 * 109.47222 * 210.00216 * 21 19 17 24 24 H 1.48496 * 109.46786 * 330.00050 * 21 19 17 25 25 C 1.38279 * 120.14016 * 0.24114 * 15 14 13 26 26 C 1.38115 * 120.07169 * 359.47888 * 25 15 14 27 27 H 1.09000 * 109.46844 * 60.00567 * 1 2 3 28 28 H 1.09005 * 109.46998 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47343 * 300.00250 * 1 2 3 30 30 H 0.97001 * 120.00213 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47244 * 60.00377 * 6 3 2 32 32 H 1.09005 * 109.47316 * 300.00637 * 6 3 2 33 33 H 1.08994 * 109.47104 * 60.00177 * 7 6 3 34 34 H 1.09004 * 109.47172 * 299.99782 * 7 6 3 35 35 H 0.96995 * 120.00061 * 359.97438 * 8 7 6 36 36 H 0.96997 * 120.00223 * 5.31353 * 11 9 8 37 37 H 1.08002 * 120.04104 * 0.02562 * 13 12 11 38 38 H 1.08000 * 119.96795 * 180.02562 * 14 13 12 39 39 H 1.08998 * 109.47970 * 330.00567 * 16 15 14 40 40 H 1.09009 * 109.46993 * 210.00326 * 16 15 14 41 41 H 0.97006 * 119.99851 * 180.02562 * 20 19 17 42 42 H 1.08001 * 119.96119 * 179.72073 * 25 15 14 43 43 H 1.07994 * 120.03965 * 180.25449 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7188 2.1702 -1.0713 5 8 3.6606 1.0491 -0.0257 6 6 1.8763 2.1974 1.5920 7 6 2.5889 3.5458 1.7131 8 7 2.2528 4.1620 2.9991 9 6 2.7691 5.3633 3.3262 10 8 3.5141 5.9353 2.5541 11 7 2.4596 5.9302 4.5090 12 6 2.9045 7.2243 4.8024 13 6 3.0260 8.1649 3.7881 14 6 3.4658 9.4410 4.0807 15 6 3.7855 9.7822 5.3822 16 6 4.2657 11.1753 5.6978 17 6 3.0841 12.0518 6.0248 18 1 2.0855 11.6412 6.0055 19 6 3.2777 13.3794 6.3426 20 7 2.2461 14.1456 6.6226 21 14 5.0050 14.0899 6.3754 22 1 5.3485 14.6186 5.0310 23 1 5.0691 15.1897 7.3711 24 1 5.9707 13.0259 6.7503 25 6 3.6708 8.8462 6.3935 26 6 3.2261 7.5701 6.1083 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.9500 -0.8400 0.0004 31 1 2.1957 1.5432 2.4032 32 1 0.7986 2.3497 1.6509 33 1 2.2692 4.1998 0.9019 34 1 3.6667 3.3939 1.6541 35 1 1.6582 3.7057 3.6148 36 1 1.9284 5.4414 5.1569 37 1 2.7769 7.8990 2.7714 38 1 3.5602 10.1732 3.2924 39 1 4.7924 11.5825 4.8348 40 1 4.9409 11.1419 6.5530 41 1 2.3822 15.0798 6.8458 42 1 3.9256 9.1145 7.4082 43 1 3.1327 6.8407 6.8992 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001477094271.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:26 Heat of formation + Delta-G solvation = -104.932139 kcal Electronic energy + Delta-G solvation = -25946.836245 eV Core-core repulsion = 21924.984558 eV Total energy + Delta-G solvation = -4021.851687 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.70661 -39.83855 -38.26556 -37.12685 -36.87614 -36.13524 -35.85449 -34.93476 -32.88912 -31.77610 -31.61529 -28.65085 -26.77539 -25.38643 -24.27884 -23.80849 -22.43609 -21.61394 -20.46112 -19.65123 -18.95099 -18.92384 -18.50735 -17.69933 -17.30774 -16.98326 -16.70124 -16.23958 -16.10828 -15.95437 -15.77514 -15.43267 -15.12618 -14.82452 -14.58006 -14.36075 -14.26612 -13.90984 -13.76405 -13.52139 -13.45253 -13.29609 -13.24765 -13.17025 -12.92147 -12.50844 -12.50190 -12.28095 -12.11319 -11.84389 -11.80422 -11.63832 -11.32646 -10.98190 -10.77210 -10.46340 -10.31553 -9.75370 -8.79049 -8.28261 -6.32786 -0.86737 0.47658 0.58539 1.38337 1.38834 1.47180 1.51313 1.77355 1.98923 2.36748 2.72694 3.00225 3.06089 3.17327 3.19764 3.29503 3.77888 4.05137 4.15784 4.22871 4.24010 4.33154 4.46248 4.55973 4.63213 4.65063 4.71200 4.74488 4.94372 5.06244 5.07199 5.08721 5.19847 5.26230 5.38814 5.44247 5.57821 5.64805 5.91843 6.02780 6.11114 6.18001 6.31254 6.73223 6.93821 7.30491 7.41037 8.88020 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.033225 B = 0.001650 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.540193 B =16967.518266 C =17094.163896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -1.113 6.113 3 S 2.632 3.368 4 O -0.993 6.993 5 O -0.993 6.993 6 C -0.626 4.626 7 C 0.137 3.863 8 N -0.715 5.715 9 C 0.695 3.305 10 O -0.616 6.616 11 N -0.664 5.664 12 C 0.139 3.861 13 C -0.128 4.128 14 C -0.119 4.119 15 C -0.077 4.077 16 C 0.021 3.979 17 C -0.518 4.518 18 H 0.030 0.970 19 C 0.008 3.992 20 N -0.948 5.948 21 Si 0.949 3.051 22 H -0.269 1.269 23 H -0.281 1.281 24 H -0.245 1.245 25 C -0.111 4.111 26 C -0.130 4.130 27 H 0.055 0.945 28 H 0.104 0.896 29 H 0.087 0.913 30 H 0.427 0.573 31 H 0.178 0.822 32 H 0.175 0.825 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.422 0.578 36 H 0.426 0.574 37 H 0.121 0.879 38 H 0.113 0.887 39 H 0.024 0.976 40 H 0.035 0.965 41 H 0.267 0.733 42 H 0.132 0.868 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.206 -36.434 -6.740 37.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.876 5.876 3 S 2.724 3.276 4 O -0.983 6.983 5 O -0.983 6.983 6 C -0.757 4.757 7 C 0.010 3.990 8 N -0.374 5.374 9 C 0.395 3.605 10 O -0.495 6.495 11 N -0.314 5.314 12 C 0.045 3.955 13 C -0.149 4.149 14 C -0.138 4.138 15 C -0.078 4.078 16 C -0.016 4.016 17 C -0.556 4.556 18 H 0.048 0.952 19 C -0.189 4.189 20 N -0.589 5.589 21 Si 0.772 3.228 22 H -0.195 1.195 23 H -0.207 1.207 24 H -0.168 1.168 25 C -0.129 4.129 26 C -0.150 4.150 27 H 0.074 0.926 28 H 0.122 0.878 29 H 0.105 0.895 30 H 0.263 0.737 31 H 0.195 0.805 32 H 0.193 0.807 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.261 0.739 36 H 0.265 0.735 37 H 0.139 0.861 38 H 0.131 0.869 39 H 0.042 0.958 40 H 0.053 0.947 41 H 0.076 0.924 42 H 0.150 0.850 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.207 -35.384 -8.146 36.552 hybrid contribution -0.267 0.305 0.937 1.021 sum -4.474 -35.079 -7.209 36.090 Atomic orbital electron populations 1.21831 0.77237 1.06117 1.02761 1.55076 1.16818 1.23695 1.91964 1.04092 0.72687 0.74025 0.76778 1.93587 1.79211 1.73605 1.51852 1.93585 1.35122 1.81872 1.87766 1.30747 1.13650 1.06575 1.24705 1.20847 1.00082 0.91613 0.86430 1.44671 1.52706 1.19040 1.21016 1.16149 0.80530 0.81757 0.82026 1.90973 1.41422 1.64880 1.52235 1.42204 1.56527 1.14566 1.18071 1.17363 1.00610 0.83798 0.93744 1.21025 1.02088 0.92302 0.99468 1.20958 1.00338 0.96044 0.96461 1.20177 0.98034 0.95928 0.93634 1.18648 0.95689 0.90324 0.96983 1.21177 0.93173 0.94716 1.46509 0.95177 1.25960 1.01528 0.97266 0.94150 1.70055 1.32689 1.07232 1.48923 0.85671 0.79944 0.78613 0.78538 1.19463 1.20671 1.16822 1.21027 0.99937 0.92827 0.99130 1.21014 1.01450 0.97270 0.95302 0.92577 0.87779 0.89500 0.73722 0.80455 0.80744 0.91023 0.90875 0.73919 0.73465 0.86069 0.86930 0.95796 0.94662 0.92402 0.84991 0.82140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.00 11.03 127.77 1.41 1.41 16 2 N -1.11 -4.01 6.08 -206.55 -1.25 -5.27 16 3 S 2.63 27.68 5.46 -56.49 -0.31 27.37 16 4 O -0.99 -19.47 17.73 -127.65 -2.26 -21.73 16 5 O -0.99 -18.75 18.08 -127.65 -2.31 -21.05 16 6 C -0.63 -1.78 6.14 71.98 0.44 -1.34 16 7 C 0.14 1.79 5.68 86.38 0.49 2.28 16 8 N -0.72 -9.08 5.56 -478.53 -2.66 -11.74 16 9 C 0.70 16.39 8.30 179.05 1.49 17.87 16 10 O -0.62 -21.20 14.03 -3.98 -0.06 -21.25 16 11 N -0.66 -13.80 5.35 -317.18 -1.70 -15.49 16 12 C 0.14 4.21 6.28 38.14 0.24 4.45 16 13 C -0.13 -4.75 8.65 22.39 0.19 -4.56 16 14 C -0.12 -4.96 9.69 22.25 0.22 -4.75 16 15 C -0.08 -3.34 5.07 -19.84 -0.10 -3.44 16 16 C 0.02 1.02 4.17 29.10 0.12 1.14 16 17 C -0.52 -30.45 9.65 25.60 0.25 -30.20 16 18 H 0.03 1.97 7.98 -2.91 -0.02 1.94 16 19 C 0.01 0.47 5.47 84.66 0.46 0.93 16 20 N -0.95 -59.88 13.96 21.45 0.30 -59.58 16 21 Si 0.95 44.62 27.46 68.60 1.88 46.50 16 22 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 23 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 24 H -0.24 -10.65 6.55 99.48 0.65 -9.99 16 25 C -0.11 -4.01 9.69 22.25 0.22 -3.79 16 26 C -0.13 -3.73 9.96 22.39 0.22 -3.51 16 27 H 0.06 0.19 8.04 -2.39 -0.02 0.17 16 28 H 0.10 -0.39 8.14 -2.38 -0.02 -0.41 16 29 H 0.09 -0.47 7.73 -2.39 -0.02 -0.49 16 30 H 0.43 0.48 8.92 -96.75 -0.86 -0.39 16 31 H 0.18 -0.64 8.14 -2.39 -0.02 -0.66 16 32 H 0.17 -0.62 7.77 -2.39 -0.02 -0.64 16 33 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.42 1.42 8.49 -92.71 -0.79 0.63 16 36 H 0.43 4.71 8.83 -92.71 -0.82 3.89 16 37 H 0.12 4.57 6.41 -2.91 -0.02 4.55 16 38 H 0.11 4.70 8.06 -2.91 -0.02 4.67 16 39 H 0.02 1.15 7.51 -2.39 -0.02 1.13 16 40 H 0.04 1.65 7.15 -2.38 -0.02 1.63 16 41 H 0.27 15.68 8.31 -92.70 -0.77 14.91 16 42 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 43 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -94.56 378.15 -4.17 -98.74 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -1.46 Total: 7.02 kcal Atomic # 6 Polarization: -29.16 SS G_CDS: 5.65 Total: -23.51 kcal Atomic # 7 Polarization: -86.77 SS G_CDS: -5.31 Total: -92.09 kcal Atomic # 8 Polarization: -59.41 SS G_CDS: -4.63 Total: -64.03 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.88 Total: 46.50 kcal Atomic # 16 Polarization: 27.68 SS G_CDS: -0.31 Total: 27.37 kcal Total: -94.56 -4.17 -98.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001477094271.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.194 kcal (2) G-P(sol) polarization free energy of solvation -94.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds