Wall clock time and date at job start Sat Apr 11 2020 06:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34228 * 116.99948 * 2 1 4 4 O 1.20823 * 120.00163 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99931 * 179.97438 * 3 2 1 6 6 C 1.52999 * 109.47294 * 179.97438 * 5 3 2 7 7 N 1.46505 * 109.47137 * 179.97438 * 6 5 3 8 8 C 1.36536 * 120.00390 * 274.91238 * 7 6 5 9 9 H 1.07997 * 119.99985 * 37.17695 * 8 7 6 10 10 C 1.39248 * 119.99723 * 217.18590 * 8 7 6 11 11 N 1.31242 * 120.00260 * 6.37951 * 10 8 7 12 12 Si 1.86798 * 119.99829 * 186.38135 * 10 8 7 13 13 H 1.48508 * 109.47062 * 89.99791 * 12 10 8 14 14 H 1.48498 * 109.47287 * 209.99609 * 12 10 8 15 15 H 1.48501 * 109.47181 * 329.99813 * 12 10 8 16 16 C 1.34774 * 119.99396 * 94.91135 * 7 6 5 17 17 O 1.21710 * 119.99845 * 187.26357 * 16 7 6 18 18 C 1.46989 * 120.00541 * 7.25720 * 16 7 6 19 19 N 1.37125 * 125.47065 * 328.08435 * 18 16 7 20 20 H 0.97002 * 124.84624 * 359.97438 * 19 18 16 21 21 C 1.37556 * 110.31827 * 180.02562 * 19 18 16 22 22 C 1.39338 * 132.81698 * 179.97438 * 21 19 18 23 23 C 1.37680 * 119.84048 * 180.02562 * 22 21 19 24 24 C 1.38881 * 120.69013 * 0.02562 * 23 22 21 25 25 C 1.36603 * 120.47445 * 359.97438 * 24 23 22 26 26 C 1.39615 * 119.80532 * 0.27315 * 25 24 23 27 27 C 1.38799 * 125.47435 * 148.09995 * 18 16 7 28 28 C 1.43207 * 126.85199 * 359.94962 * 27 18 16 29 29 N 9.17798 * 136.47533 * 324.28610 * 2 1 3 30 30 H 1.08999 * 109.47499 * 300.00673 * 1 2 3 31 31 H 1.09002 * 109.47366 * 60.00620 * 1 2 3 32 32 H 1.08999 * 109.47756 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47196 * 59.99046 * 5 3 2 34 34 H 1.09004 * 109.47134 * 299.99645 * 5 3 2 35 35 H 1.09005 * 109.46972 * 60.00133 * 6 5 3 36 36 H 1.08992 * 109.47039 * 299.99988 * 6 5 3 37 37 H 0.96999 * 119.99784 * 184.76326 * 11 10 8 38 38 H 1.07998 * 120.08563 * 0.02955 * 22 21 19 39 39 H 1.07998 * 119.66247 * 180.02562 * 23 22 21 40 40 H 1.07993 * 119.76218 * 179.97438 * 24 23 22 41 41 H 1.07997 * 120.09785 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2749 0.0006 6 6 4.0001 2.7420 -0.0002 7 7 5.4631 2.8187 0.0010 8 6 6.1493 2.7542 1.1797 9 1 5.8070 2.1010 1.9687 10 6 7.2902 3.5308 1.3645 11 7 7.6357 4.4155 0.4587 12 14 8.3291 3.3134 2.9016 13 1 9.3713 2.2850 2.6533 14 1 8.9789 4.6033 3.2465 15 1 7.4631 2.8788 4.0270 16 6 6.1317 2.9528 -1.1615 17 8 7.3468 2.8838 -1.1761 18 6 5.3936 3.1822 -2.4117 19 7 4.1420 2.7000 -2.6968 20 1 3.6094 2.1527 -2.0987 21 6 3.7498 3.1020 -3.9525 22 6 2.5931 2.8845 -4.6983 23 6 2.4790 3.4257 -5.9591 24 6 3.5067 4.1881 -6.4989 25 6 4.6496 4.4143 -5.7858 26 6 4.7890 3.8709 -4.5073 27 6 5.8516 3.9216 -3.4935 28 6 7.1106 4.5952 -3.6020 29 7 8.1067 5.1319 -3.6896 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 3.9563 0.7804 -0.8890 34 1 3.9556 0.7810 0.8909 35 1 3.6100 3.2367 0.8894 36 1 3.6108 3.2355 -0.8906 37 1 8.4663 4.9073 0.5532 38 1 1.7879 2.2928 -4.2884 39 1 1.5810 3.2556 -6.5345 40 1 3.4015 4.6051 -7.4895 41 1 5.4448 5.0085 -6.2113 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001587591821.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:10 Heat of formation + Delta-G solvation = 5.551153 kcal Electronic energy + Delta-G solvation = -29655.424797 eV Core-core repulsion = 25502.920074 eV Total energy + Delta-G solvation = -4152.504723 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.38653 -40.52029 -38.57603 -36.71201 -36.58063 -35.70225 -34.84454 -32.58911 -31.84560 -30.68109 -29.50216 -28.85981 -27.80873 -25.66659 -24.22057 -22.92419 -22.49441 -21.77671 -20.80162 -20.04045 -18.06188 -17.75038 -17.24953 -16.77494 -16.70664 -16.40407 -15.81250 -15.59555 -14.90522 -14.85451 -14.37479 -14.17079 -13.90273 -13.79265 -13.72773 -13.53031 -13.22707 -12.72467 -12.56186 -12.54530 -12.32724 -12.21692 -11.99882 -11.80803 -11.64226 -11.52340 -11.30536 -11.08556 -10.98412 -10.88045 -10.80838 -10.75562 -10.58554 -10.30565 -9.47647 -9.24166 -8.54759 -8.10671 -7.54271 -7.47676 -6.23192 -4.15261 1.01691 1.65608 2.08233 2.14119 2.56755 3.02297 3.21657 3.25466 3.29412 3.53987 3.82909 3.95504 4.19871 4.41454 4.57928 4.65514 4.69953 4.78893 4.91808 4.94178 5.01065 5.03746 5.09771 5.16209 5.26979 5.30519 5.42653 5.49460 5.51675 5.64283 5.77142 5.84431 5.92978 6.10345 6.19236 6.31561 6.50020 6.63840 6.68139 6.74618 7.14862 7.30431 7.45177 7.61597 7.90061 8.42079 8.67258 8.81659 9.26290 9.91416 10.72787 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.007583 B = 0.005800 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3691.668514 B = 4826.369983 C = 8255.281015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.360 6.360 3 C 0.460 3.540 4 O -0.502 6.502 5 C -0.144 4.144 6 C 0.092 3.908 7 N -0.434 5.434 8 C -0.329 4.329 9 H 0.092 0.908 10 C 0.044 3.956 11 N -0.793 5.793 12 Si 0.922 3.078 13 H -0.277 1.277 14 H -0.284 1.284 15 H -0.271 1.271 16 C 0.490 3.510 17 O -0.476 6.476 18 C 0.154 3.846 19 N -0.577 5.577 20 H 0.419 0.581 21 C 0.093 3.907 22 C -0.121 4.121 23 C -0.105 4.105 24 C -0.140 4.140 25 C -0.073 4.073 26 C -0.066 4.066 27 C -0.095 4.095 28 C 0.303 3.697 29 N -0.433 5.433 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.125 0.875 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.271 0.729 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.765 -7.244 -6.261 18.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.277 6.277 3 C 0.302 3.698 4 O -0.390 6.390 5 C -0.183 4.183 6 C -0.033 4.033 7 N -0.155 5.155 8 C -0.456 4.456 9 H 0.110 0.890 10 C -0.169 4.169 11 N -0.427 5.427 12 Si 0.749 3.251 13 H -0.203 1.203 14 H -0.210 1.210 15 H -0.196 1.196 16 C 0.277 3.723 17 O -0.348 6.348 18 C 0.035 3.965 19 N -0.186 5.186 20 H 0.263 0.737 21 C -0.014 4.014 22 C -0.142 4.142 23 C -0.124 4.124 24 C -0.159 4.159 25 C -0.092 4.092 26 C -0.072 4.072 27 C -0.107 4.107 28 C -0.011 4.011 29 N -0.110 5.110 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.143 0.857 35 H 0.110 0.890 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.138 0.862 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.739 -6.047 -6.310 16.283 hybrid contribution -0.514 -0.506 1.108 1.322 sum -14.253 -6.554 -5.202 16.527 Atomic orbital electron populations 1.23266 0.76514 1.03602 1.02623 1.86541 1.23340 1.33633 1.84147 1.23927 0.92148 0.81356 0.72349 1.90697 1.67208 1.36130 1.44919 1.22171 0.86674 1.02504 1.06954 1.21762 0.85182 0.91850 1.04510 1.43128 1.01955 1.64773 1.05642 1.19221 1.10557 1.23814 0.92027 0.89038 1.25355 0.99084 0.94493 0.97995 1.69896 1.21783 1.18820 1.32218 0.86011 0.80117 0.77824 0.81176 1.20290 1.20963 1.19586 1.16701 0.87070 0.88102 0.80438 1.90753 1.11824 1.49308 1.82901 1.21736 0.83446 0.94567 0.96707 1.42694 1.15365 1.45997 1.14544 0.73726 1.18266 0.96341 1.00445 0.86323 1.20061 0.95411 1.03829 0.94894 1.20749 0.98966 0.98151 0.94536 1.20598 0.93971 1.01197 1.00178 1.20269 0.97969 0.98725 0.92193 1.18727 0.92776 1.01171 0.94511 1.15817 0.91200 1.08411 0.95317 1.24076 0.91414 0.92466 0.93142 1.81025 1.10597 1.11032 1.08366 0.91826 0.91870 0.88193 0.88206 0.85731 0.89021 0.90635 0.91824 0.86166 0.85788 0.85987 0.85976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.34 16 2 O -0.36 -4.03 10.56 -39.25 -0.41 -4.44 16 3 C 0.46 5.93 7.88 36.00 0.28 6.21 16 4 O -0.50 -7.55 15.73 -18.75 -0.29 -7.85 16 5 C -0.14 -1.94 5.22 -27.88 -0.15 -2.09 16 6 C 0.09 1.60 4.21 -4.04 -0.02 1.59 16 7 N -0.43 -9.71 2.57 -116.21 -0.30 -10.01 16 8 C -0.33 -8.03 9.35 -15.08 -0.14 -8.17 16 9 H 0.09 2.04 7.84 -52.49 -0.41 1.63 16 10 C 0.04 1.13 4.79 -17.43 -0.08 1.05 16 11 N -0.79 -22.54 10.38 55.51 0.58 -21.96 16 12 Si 0.92 20.36 29.56 -169.99 -5.03 15.34 16 13 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 15 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 16 C 0.49 11.83 6.58 -12.72 -0.08 11.75 16 17 O -0.48 -13.49 13.26 5.18 0.07 -13.42 16 18 C 0.15 3.15 6.30 -81.75 -0.52 2.64 16 19 N -0.58 -9.35 4.67 -6.94 -0.03 -9.38 16 20 H 0.42 5.97 4.42 -40.82 -0.18 5.79 16 21 C 0.09 1.42 7.23 -83.97 -0.61 0.81 16 22 C -0.12 -1.47 10.08 -39.38 -0.40 -1.87 16 23 C -0.10 -1.12 10.01 -39.55 -0.40 -1.52 16 24 C -0.14 -1.60 9.98 -39.93 -0.40 -1.99 16 25 C -0.07 -1.02 10.05 -39.66 -0.40 -1.42 16 26 C -0.07 -1.11 6.32 -104.93 -0.66 -1.77 16 27 C -0.10 -1.95 6.18 -104.23 -0.64 -2.59 16 28 C 0.30 6.91 14.91 -22.51 -0.34 6.58 16 29 N -0.43 -10.43 18.53 41.79 0.77 -9.66 16 30 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 31 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 32 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.10 1.24 7.09 -51.93 -0.37 0.87 16 34 H 0.12 1.61 8.14 -51.93 -0.42 1.19 16 35 H 0.09 1.62 8.04 -51.93 -0.42 1.20 16 36 H 0.08 1.29 4.73 -51.93 -0.25 1.04 16 37 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 38 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 39 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 41 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 361.45 15.07 5.45 5.45 Total: -1.00 -33.31 361.45 -6.82 -40.12 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -4.14 Total: 5.28 kcal Atomic # 6 Polarization: 14.01 SS G_CDS: -3.48 Total: 10.54 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: 1.02 Total: -51.01 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.64 Total: -25.71 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.03 Total: 15.34 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.31 -6.82 -40.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001587591821.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.673 kcal (2) G-P(sol) polarization free energy of solvation -33.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds