Wall clock time and date at job start Sat Apr 11 2020 06:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 113.99864 * 2 1 4 4 C 1.52996 * 109.47328 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47059 * 64.99617 * 4 3 2 6 6 C 1.38606 * 119.99817 * 179.72388 * 5 4 3 7 7 N 1.29687 * 124.94848 * 179.97438 * 6 5 4 8 8 C 1.32134 * 116.86439 * 179.81587 * 7 6 5 9 9 C 1.50697 * 122.70724 * 180.22237 * 8 7 6 10 10 C 1.50701 * 109.47621 * 305.26784 * 9 8 7 11 11 O 1.21285 * 119.99459 * 0.02562 * 10 9 8 12 12 N 1.34764 * 120.00193 * 180.02562 * 10 9 8 13 13 C 1.47073 * 136.05847 * 359.62213 * 12 10 9 14 14 C 1.53757 * 87.88925 * 152.96967 * 13 12 10 15 15 O 1.42905 * 114.39536 * 272.68300 * 14 13 12 16 16 C 1.50694 * 114.27016 * 139.79242 * 14 13 12 17 17 H 1.07996 * 120.00377 * 266.47625 * 16 14 13 18 18 C 1.37878 * 119.99973 * 86.47282 * 16 14 13 19 19 N 1.31516 * 119.99996 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 120.00182 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46876 * 60.00680 * 20 18 16 22 22 H 1.48498 * 109.47108 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47335 * 300.00652 * 20 18 16 24 24 C 1.47073 * 136.05956 * 180.02562 * 12 10 9 25 25 C 1.33325 * 114.57740 * 0.47264 * 8 7 6 26 26 S 1.70965 * 124.94987 * 0.30550 * 6 5 4 27 27 H 1.09006 * 109.47017 * 299.99693 * 1 2 3 28 28 H 1.08999 * 109.47378 * 59.99880 * 1 2 3 29 29 H 1.09004 * 109.47046 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47069 * 59.99874 * 3 2 1 31 31 H 1.09008 * 109.46887 * 300.00568 * 3 2 1 32 32 H 1.09004 * 109.47066 * 304.99885 * 4 3 2 33 33 H 1.08994 * 109.46974 * 185.00032 * 4 3 2 34 34 H 0.97001 * 120.00384 * 0.02562 * 5 4 3 35 35 H 1.08998 * 109.46790 * 65.27160 * 9 8 7 36 36 H 1.09003 * 109.46999 * 185.26827 * 9 8 7 37 37 H 1.08996 * 113.46789 * 267.70259 * 13 12 10 38 38 H 1.08997 * 113.46203 * 38.14250 * 13 12 10 39 39 H 0.96699 * 113.99346 * 273.58402 * 15 14 13 40 40 H 0.96998 * 120.00221 * 179.97438 * 19 18 16 41 41 H 1.09006 * 113.46223 * 321.85921 * 24 12 10 42 42 H 1.08996 * 113.46960 * 92.29948 * 24 12 10 43 43 H 1.07994 * 125.94870 * 179.75065 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 5.3259 0.3555 -1.4852 7 7 5.8206 -0.1841 -2.5557 8 6 7.1354 -0.3031 -2.6115 9 6 7.8490 -0.9056 -3.7942 10 6 7.2921 -2.2783 -4.0712 11 8 6.4028 -2.7233 -3.3768 12 7 7.7822 -3.0113 -5.0904 13 6 8.8125 -2.8316 -6.1244 14 6 8.9729 -4.3606 -6.1496 15 8 9.9037 -4.8723 -5.1936 16 6 9.1548 -4.9417 -7.5281 17 1 8.2985 -5.2984 -8.0811 18 6 10.4146 -5.0180 -8.0833 19 7 11.4575 -4.5841 -7.4097 20 14 10.6402 -5.7390 -9.7917 21 1 9.8636 -4.9393 -10.7729 22 1 12.0795 -5.7080 -10.1559 23 1 10.1569 -7.1430 -9.8043 24 6 7.5172 -4.3400 -5.6625 25 6 7.7792 0.1480 -1.5347 26 16 6.5815 0.7643 -0.3993 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6885 1.8464 0.8899 31 1 1.6884 1.8464 -0.8900 32 1 3.8514 0.5683 0.8410 33 1 3.9783 2.1766 0.0889 34 1 3.3224 0.3040 -1.9208 35 1 7.7032 -0.2711 -4.6683 36 1 8.9140 -0.9831 -3.5751 37 1 8.4250 -2.4205 -7.0565 38 1 9.6985 -2.3066 -5.7676 39 1 10.8196 -4.8838 -5.5036 40 1 12.3437 -4.6381 -7.8001 41 1 7.2996 -5.1001 -4.9121 42 1 6.7885 -4.3261 -6.4730 43 1 8.8486 0.1372 -1.3846 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001638886511.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:05 Heat of formation + Delta-G solvation = -32.783892 kcal Electronic energy + Delta-G solvation = -26546.475785 eV Core-core repulsion = 22527.752682 eV Total energy + Delta-G solvation = -4018.723104 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.96500 -39.17788 -38.57749 -37.15568 -35.94011 -33.91991 -32.15266 -31.86204 -29.90325 -28.60960 -27.36971 -26.66871 -25.17058 -24.97033 -23.58980 -22.93826 -20.44325 -19.58919 -18.47950 -17.83112 -17.34254 -17.12166 -16.59229 -16.31741 -16.12695 -15.51308 -15.31312 -15.01418 -14.74439 -14.71443 -14.54743 -14.16102 -13.77533 -13.41455 -13.17714 -12.87269 -12.77629 -12.49842 -12.32109 -12.28325 -12.00659 -11.71543 -11.61912 -11.50896 -11.18944 -11.02202 -10.93581 -10.46254 -10.27668 -10.21601 -10.20412 -9.53001 -9.37546 -9.06434 -8.98156 -8.72463 -8.31625 -7.71979 -7.68246 -6.36836 -4.46828 1.13645 1.28898 1.87082 2.86068 3.10131 3.18379 3.24039 3.24258 3.26673 3.39146 3.79523 4.21226 4.33737 4.58084 4.68770 4.76713 4.86232 4.90399 4.93395 5.02419 5.22459 5.25621 5.28562 5.35077 5.52858 5.68026 5.70183 5.92642 6.01321 6.19300 6.29975 6.48737 6.51704 6.59587 6.64335 6.74224 6.76648 7.17068 7.28300 7.66453 7.85502 8.15712 8.55799 8.66570 8.95100 9.24318 9.53975 10.69700 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021108 B = 0.002088 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.162008 B =13409.406741 C =14315.295639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.051 3.949 4 C 0.126 3.874 5 N -0.693 5.693 6 C 0.320 3.680 7 N -0.519 5.519 8 C 0.143 3.857 9 C -0.062 4.062 10 C 0.541 3.459 11 O -0.544 6.544 12 N -0.639 5.639 13 C 0.071 3.929 14 C 0.240 3.760 15 O -0.571 6.571 16 C -0.532 4.532 17 H 0.072 0.928 18 C 0.071 3.929 19 N -0.899 5.899 20 Si 0.909 3.091 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.273 1.273 24 C 0.109 3.891 25 C -0.299 4.299 26 S 0.073 5.927 27 H 0.042 0.958 28 H 0.043 0.957 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.414 0.586 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.080 0.920 38 H 0.064 0.936 39 H 0.393 0.607 40 H 0.274 0.726 41 H 0.064 0.936 42 H 0.083 0.917 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.941 15.814 13.137 24.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C -0.026 4.026 4 C 0.002 3.998 5 N -0.336 5.336 6 C -0.052 4.052 7 N -0.243 5.243 8 C 0.012 3.988 9 C -0.104 4.104 10 C 0.329 3.671 11 O -0.422 6.422 12 N -0.374 5.374 13 C -0.052 4.052 14 C 0.198 3.802 15 O -0.384 6.384 16 C -0.570 4.570 17 H 0.090 0.910 18 C -0.131 4.131 19 N -0.540 5.540 20 Si 0.736 3.264 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.014 4.014 25 C -0.439 4.439 26 S 0.320 5.680 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.252 0.748 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.249 0.751 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.101 0.899 43 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -14.090 15.874 14.807 25.880 hybrid contribution 0.662 -0.396 -2.239 2.368 sum -13.428 15.478 12.568 24.038 Atomic orbital electron populations 1.22783 0.80520 1.03236 0.99998 1.87990 1.20101 1.26967 1.95423 1.22717 0.92344 0.85849 1.01650 1.21514 0.93241 0.98497 0.86572 1.43707 1.01342 1.67632 1.20886 1.23443 0.91251 0.97366 0.93151 1.66108 1.12547 1.22046 1.23601 1.19196 0.87203 0.96957 0.95463 1.20161 0.99966 0.94469 0.95826 1.19617 0.81973 0.85501 0.79986 1.90674 1.30632 1.71914 1.48946 1.49702 1.39415 1.19357 1.28898 1.24226 0.88895 1.03551 0.88521 1.19585 0.85452 0.87701 0.87488 1.86052 1.23147 1.85849 1.43350 1.21409 0.94040 1.41905 0.99695 0.91031 1.25078 0.95540 0.93796 0.98681 1.69256 0.99573 1.46532 1.38595 0.86370 0.77217 0.79828 0.82987 1.19893 1.21018 1.19865 1.23273 0.99070 0.83134 0.95878 1.26126 1.03506 1.16554 0.97746 1.83543 0.98059 1.63353 1.23053 0.93950 0.93865 0.89300 0.91159 0.92155 0.90640 0.90087 0.74753 0.87693 0.87461 0.90207 0.91795 0.75055 0.91568 0.91771 0.89946 0.80837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.48 10.65 -35.23 -0.38 -3.85 16 3 C 0.05 0.32 6.07 37.16 0.23 0.55 16 4 C 0.13 0.98 5.92 -4.04 -0.02 0.95 16 5 N -0.69 -8.05 5.66 -62.30 -0.35 -8.40 16 6 C 0.32 4.69 8.24 -87.68 -0.72 3.97 16 7 N -0.52 -9.34 9.72 -11.36 -0.11 -9.45 16 8 C 0.14 2.44 5.64 -84.18 -0.47 1.97 16 9 C -0.06 -1.05 6.02 -29.04 -0.17 -1.22 16 10 C 0.54 11.75 8.04 -10.99 -0.09 11.66 16 11 O -0.54 -13.66 16.21 5.55 0.09 -13.57 16 12 N -0.64 -14.11 3.69 -185.01 -0.68 -14.79 16 13 C 0.07 1.54 7.86 -8.36 -0.07 1.48 16 14 C 0.24 5.85 1.58 -91.11 -0.14 5.70 16 15 O -0.57 -14.98 13.55 -35.23 -0.48 -15.46 16 16 C -0.53 -13.43 8.70 -34.44 -0.30 -13.73 16 17 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 18 C 0.07 1.78 5.39 -17.82 -0.10 1.68 16 19 N -0.90 -22.76 11.01 55.43 0.61 -22.15 16 20 Si 0.91 19.48 29.54 -169.99 -5.02 14.45 16 21 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 22 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 23 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 24 C 0.11 2.49 8.02 -8.49 -0.07 2.42 16 25 C -0.30 -4.26 11.04 29.02 0.32 -3.94 16 26 S 0.07 0.90 22.32 -107.50 -2.40 -1.50 16 27 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 28 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.41 4.92 8.60 -40.82 -0.35 4.57 16 35 H 0.10 1.60 8.14 -51.93 -0.42 1.17 16 36 H 0.11 1.60 8.03 -51.93 -0.42 1.18 16 37 H 0.08 1.64 8.10 -51.93 -0.42 1.22 16 38 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.39 10.33 6.32 45.56 0.29 10.62 16 40 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 41 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 42 H 0.08 1.73 8.10 -51.93 -0.42 1.31 16 43 H 0.17 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 381.95 15.07 5.76 5.76 Total: -1.00 -32.80 381.95 -8.98 -41.78 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -5.52 Total: 14.39 kcal Atomic # 6 Polarization: 13.30 SS G_CDS: -0.50 Total: 12.80 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: -0.53 Total: -54.79 kcal Atomic # 8 Polarization: -32.12 SS G_CDS: -0.76 Total: -32.88 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.45 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.40 Total: -1.50 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.80 -8.98 -41.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638886511.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.991 kcal (2) G-P(sol) polarization free energy of solvation -32.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds