Wall clock time and date at job start Sat Apr 11 2020 06:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34785 * 119.99615 * 2 1 4 4 O 1.21279 * 119.99901 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99671 * 179.97438 * 3 2 1 6 6 C 1.50696 * 109.46876 * 180.02562 * 5 3 2 7 7 N 1.29033 * 124.91608 * 90.00346 * 6 5 3 8 8 C 1.31781 * 117.12684 * 179.97438 * 7 6 5 9 9 C 1.50693 * 122.75225 * 179.97438 * 8 7 6 10 10 N 1.46501 * 109.47584 * 275.02792 * 9 8 7 11 11 C 1.36940 * 119.99402 * 270.00115 * 10 9 8 12 12 H 1.07998 * 120.00354 * 329.12572 * 11 10 9 13 13 C 1.38813 * 119.99510 * 149.13541 * 11 10 9 14 14 N 1.31616 * 120.00195 * 332.72022 * 13 11 10 15 15 Si 1.86801 * 119.99800 * 152.72996 * 13 11 10 16 16 H 1.48499 * 109.47200 * 84.99546 * 15 13 11 17 17 H 1.48498 * 109.47014 * 204.99146 * 15 13 11 18 18 H 1.48496 * 109.47050 * 324.99149 * 15 13 11 19 19 C 1.46498 * 120.00228 * 89.99539 * 10 9 8 20 20 C 1.52995 * 109.46954 * 85.62156 * 19 10 9 21 21 C 1.50702 * 109.46818 * 180.02562 * 20 19 10 22 22 O 1.20822 * 120.00607 * 359.97438 * 21 20 19 23 23 O 1.34228 * 119.99708 * 180.02562 * 21 20 19 24 24 C 1.45209 * 116.99985 * 179.97438 * 23 21 20 25 25 C 1.33644 * 114.49922 * 0.23220 * 8 7 6 26 26 S 1.70981 * 124.91809 * 270.00350 * 6 5 3 27 27 H 1.08999 * 109.47472 * 60.00107 * 1 2 3 28 28 H 1.08997 * 109.47156 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47151 * 299.99945 * 1 2 3 30 30 H 0.96994 * 120.00089 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.47035 * 60.00115 * 5 3 2 32 32 H 1.08993 * 109.47367 * 300.00391 * 5 3 2 33 33 H 1.08999 * 109.47320 * 155.01971 * 9 8 7 34 34 H 1.09008 * 109.46836 * 35.02468 * 9 8 7 35 35 H 0.96995 * 120.00242 * 179.97438 * 14 13 11 36 36 H 1.08999 * 109.47177 * 205.62507 * 19 10 9 37 37 H 1.09004 * 109.46958 * 325.62282 * 19 10 9 38 38 H 1.08999 * 109.47464 * 300.00174 * 20 19 10 39 39 H 1.09004 * 109.47185 * 60.00265 * 20 19 10 40 40 H 1.09001 * 109.46628 * 300.00107 * 24 23 21 41 41 H 1.08999 * 109.46937 * 59.99794 * 24 23 21 42 42 H 1.09000 * 109.47169 * 180.02562 * 24 23 21 43 43 H 1.07993 * 126.03584 * 179.77371 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5323 2.2176 0.0005 5 6 3.6458 1.1673 0.0006 6 6 4.1481 2.5881 0.0011 7 7 4.3939 3.2842 1.0594 8 6 4.8296 4.5151 0.8812 9 6 5.1552 5.4385 2.0268 10 7 3.9329 6.1100 2.4754 11 6 3.5640 7.3049 1.9173 12 1 4.3185 7.9897 1.5595 13 6 2.2200 7.6359 1.8117 14 7 1.3132 6.6861 1.7230 15 14 1.6985 9.4296 1.7952 16 1 1.7914 9.9594 0.4110 17 1 0.2978 9.5422 2.2752 18 1 2.5916 10.2130 2.6861 19 6 3.1053 5.5032 3.5209 20 6 3.6414 5.9090 4.8953 21 6 2.7904 5.2843 5.9708 22 8 1.8512 4.5866 5.6691 23 8 3.0752 5.5038 7.2640 24 6 2.2126 4.8707 8.2457 25 6 4.9538 4.8792 -0.3986 26 16 4.4747 3.5112 -1.4006 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.9499 -0.8400 -0.0004 31 1 4.0095 0.6533 -0.8892 32 1 4.0088 0.6537 0.8907 33 1 5.8795 6.1837 1.6981 34 1 5.5758 4.8614 2.8503 35 1 0.3741 6.9174 1.6496 36 1 2.0766 5.8480 3.4159 37 1 3.1363 4.4179 3.4247 38 1 4.6700 5.5642 5.0003 39 1 3.6103 6.9943 4.9915 40 1 1.1889 5.2187 8.1080 41 1 2.2490 3.7889 8.1173 42 1 2.5523 5.1296 9.2485 43 1 5.2900 5.8414 -0.7557 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001644210263.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:07 Heat of formation + Delta-G solvation = -49.877997 kcal Electronic energy + Delta-G solvation = -27778.209385 eV Core-core repulsion = 23758.745025 eV Total energy + Delta-G solvation = -4019.464360 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.88267 -39.66644 -38.76571 -36.26772 -35.49427 -34.45776 -32.44965 -31.55100 -30.47091 -28.55367 -27.33627 -26.32314 -26.06813 -24.16113 -22.76995 -21.19242 -20.35144 -19.74855 -18.96391 -17.46188 -17.22613 -16.93585 -16.29263 -16.07959 -15.93247 -15.74703 -15.28766 -14.83460 -14.42189 -14.14437 -13.83879 -13.58145 -13.46972 -13.22180 -12.86858 -12.80405 -12.56335 -12.43542 -12.23819 -12.06416 -11.87373 -11.66630 -11.57911 -11.05061 -10.95195 -10.77109 -10.54225 -10.43711 -10.10350 -10.03451 -9.84157 -9.73781 -9.65590 -9.06298 -8.96805 -8.62693 -8.45472 -7.97607 -6.73681 -5.79731 -3.28240 1.41570 2.08892 2.44936 2.81963 2.84415 3.17721 3.25135 3.38108 3.45922 3.47550 3.74129 4.49195 4.50731 4.90054 5.10782 5.26640 5.27429 5.31474 5.36670 5.38139 5.46471 5.55850 5.64859 5.75305 5.81642 5.85973 6.00675 6.02589 6.15538 6.22445 6.43699 6.48463 6.64331 6.71385 6.88278 6.98582 7.15931 7.50944 7.78462 7.84666 8.32096 8.39795 8.44899 8.56613 9.12394 9.77554 10.32865 11.19876 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.007869 B = 0.004376 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3557.432045 B = 6397.499381 C = 7879.906614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.742 5.742 3 C 0.507 3.493 4 O -0.499 6.499 5 C -0.056 4.056 6 C 0.052 3.948 7 N -0.443 5.443 8 C 0.070 3.930 9 C 0.208 3.792 10 N -0.561 5.561 11 C -0.275 4.275 12 H 0.069 0.931 13 C 0.016 3.984 14 N -0.859 5.859 15 Si 0.891 3.109 16 H -0.285 1.285 17 H -0.289 1.289 18 H -0.276 1.276 19 C 0.158 3.842 20 C -0.129 4.129 21 C 0.460 3.540 22 O -0.505 6.505 23 O -0.370 6.370 24 C 0.035 3.965 25 C -0.234 4.234 26 S 0.068 5.932 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.399 0.601 31 H 0.107 0.893 32 H 0.117 0.883 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.257 0.743 36 H 0.106 0.894 37 H 0.041 0.959 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.093 0.907 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.674 -12.967 0.337 14.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.396 5.396 3 C 0.290 3.710 4 O -0.371 6.371 5 C -0.100 4.100 6 C -0.228 4.228 7 N -0.158 5.158 8 C -0.063 4.063 9 C 0.078 3.922 10 N -0.278 5.278 11 C -0.404 4.404 12 H 0.087 0.913 13 C -0.187 4.187 14 N -0.498 5.498 15 Si 0.720 3.280 16 H -0.211 1.211 17 H -0.215 1.215 18 H -0.202 1.202 19 C 0.031 3.969 20 C -0.170 4.170 21 C 0.303 3.697 22 O -0.391 6.391 23 O -0.288 6.288 24 C -0.059 4.059 25 C -0.374 4.374 26 S 0.321 5.679 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.232 0.768 31 H 0.126 0.874 32 H 0.135 0.865 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.123 0.877 37 H 0.059 0.941 38 H 0.105 0.895 39 H 0.119 0.881 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.112 0.888 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 4.562 -12.781 -0.297 13.574 hybrid contribution -0.485 0.917 0.659 1.229 sum 4.076 -11.864 0.362 12.550 Atomic orbital electron populations 1.21492 0.79637 1.01704 1.02624 1.45720 1.07662 1.08379 1.77857 1.20482 0.89648 0.83980 0.76877 1.90905 1.69716 1.30701 1.45743 1.20071 0.92620 0.91740 1.05588 1.25758 1.05588 0.99782 0.91647 1.65967 1.12208 1.06685 1.30945 1.21637 0.98321 0.90285 0.96082 1.19817 0.90954 0.91076 0.90342 1.44068 1.25114 1.21249 1.37389 1.19058 0.90640 0.92069 1.38651 0.91330 1.25140 0.97027 0.97228 0.99354 1.70139 1.01136 1.31234 1.47275 0.86515 0.77747 0.85689 0.78073 1.21139 1.21510 1.20177 1.20789 0.98582 0.95797 0.81753 1.22334 0.98627 1.02461 0.93540 1.24469 0.84261 0.78450 0.82502 1.90651 1.29344 1.36364 1.82781 1.86566 1.55751 1.68955 1.17490 1.23127 0.94489 0.97906 0.90420 1.26654 1.12486 1.02947 0.95315 1.83358 1.62675 1.07811 1.14021 0.92350 0.90961 0.92106 0.76834 0.87449 0.86462 0.91705 0.92746 0.93279 0.87667 0.94065 0.89481 0.88078 0.92307 0.92375 0.88829 0.81440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.97 10.70 59.84 0.64 1.61 16 2 N -0.74 -8.34 5.71 -67.08 -0.38 -8.72 16 3 C 0.51 8.13 7.82 -10.98 -0.09 8.04 16 4 O -0.50 -11.31 16.03 5.56 0.09 -11.22 16 5 C -0.06 -0.76 6.28 -29.04 -0.18 -0.94 16 6 C 0.05 0.95 5.88 -13.46 -0.08 0.87 16 7 N -0.44 -9.55 10.53 -8.06 -0.08 -9.63 16 8 C 0.07 1.53 6.32 -84.23 -0.53 0.99 16 9 C 0.21 4.40 6.12 -5.20 -0.03 4.37 16 10 N -0.56 -13.88 2.45 -174.61 -0.43 -14.31 16 11 C -0.27 -7.32 9.48 -15.06 -0.14 -7.47 16 12 H 0.07 1.77 7.96 -52.49 -0.42 1.35 16 13 C 0.02 0.43 4.82 -17.43 -0.08 0.35 16 14 N -0.86 -26.00 11.45 55.49 0.64 -25.37 16 15 Si 0.89 21.62 29.63 -169.99 -5.04 16.58 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 C 0.16 3.94 4.56 -4.05 -0.02 3.92 16 20 C -0.13 -2.63 6.13 -27.88 -0.17 -2.80 16 21 C 0.46 9.29 7.96 36.01 0.29 9.57 16 22 O -0.50 -11.76 15.73 -18.75 -0.29 -12.05 16 23 O -0.37 -6.33 10.57 -39.25 -0.41 -6.74 16 24 C 0.03 0.46 10.56 101.05 1.07 1.53 16 25 C -0.23 -4.69 11.12 29.12 0.32 -4.37 16 26 S 0.07 1.20 23.18 -107.50 -2.49 -1.29 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.40 2.76 8.83 -40.82 -0.36 2.40 16 31 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.12 1.34 8.14 -51.93 -0.42 0.91 16 33 H 0.06 1.25 8.00 -51.93 -0.42 0.83 16 34 H 0.05 1.06 8.07 -51.92 -0.42 0.64 16 35 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.11 3.07 5.27 -51.93 -0.27 2.79 16 37 H 0.04 1.09 8.06 -51.93 -0.42 0.68 16 38 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 39 H 0.10 2.04 8.14 -51.93 -0.42 1.61 16 40 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 41 H 0.06 0.75 8.13 -51.93 -0.42 0.32 16 42 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.17 3.10 8.06 -52.49 -0.42 2.68 16 LS Contribution 388.34 15.07 5.85 5.85 Total: -1.00 -38.16 388.34 -7.66 -45.82 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -6.09 Total: 5.40 kcal Atomic # 6 Polarization: 14.70 SS G_CDS: 0.99 Total: 15.68 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: -0.26 Total: -58.03 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: -0.62 Total: -30.01 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.04 Total: 16.58 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -2.49 Total: -1.29 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -38.16 -7.66 -45.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001644210263.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.060 kcal (2) G-P(sol) polarization free energy of solvation -38.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds