Wall clock time and date at job start Sat Apr 11 2020 06:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34781 * 119.99828 * 2 1 4 4 O 1.21586 * 119.99983 * 359.97438 * 3 2 1 5 5 N 1.34778 * 119.99714 * 179.97438 * 3 2 1 6 6 C 1.46500 * 119.99621 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.47122 * 180.02562 * 6 5 3 8 8 N 1.46500 * 109.47122 * 180.02562 * 7 6 5 9 9 S 1.65599 * 119.99879 * 164.99639 * 8 7 6 10 10 O 1.42101 * 106.40542 * 311.46159 * 9 8 7 11 11 O 1.42098 * 106.40229 * 178.53922 * 9 8 7 12 12 C 1.76203 * 107.21703 * 65.00041 * 9 8 7 13 13 C 1.38233 * 120.00082 * 90.00045 * 12 9 8 14 14 C 1.38237 * 120.00111 * 179.97438 * 13 12 9 15 15 C 1.38231 * 119.99929 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99766 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47151 * 90.00279 * 16 15 14 18 18 H 1.08002 * 119.99761 * 359.97438 * 17 16 15 19 19 C 1.37871 * 119.99694 * 180.27762 * 17 16 15 20 20 N 1.31514 * 120.00482 * 359.71466 * 19 17 16 21 21 Si 1.86801 * 119.99746 * 179.72062 * 19 17 16 22 22 H 1.48504 * 109.47266 * 60.00049 * 21 19 17 23 23 H 1.48504 * 109.46970 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47383 * 299.99456 * 21 19 17 25 25 C 1.38233 * 120.00119 * 0.25187 * 15 14 13 26 26 C 1.38232 * 119.99735 * 359.49690 * 25 15 14 27 27 H 1.09007 * 109.47065 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47768 * 299.99642 * 1 2 3 29 29 H 1.08999 * 109.47376 * 60.00041 * 1 2 3 30 30 H 0.97003 * 120.00452 * 179.97438 * 2 1 3 31 31 H 0.96998 * 119.99853 * 0.02562 * 5 3 2 32 32 H 1.09004 * 109.47115 * 60.00212 * 6 5 3 33 33 H 1.09003 * 109.47247 * 299.99936 * 6 5 3 34 34 H 1.08995 * 109.47527 * 59.99431 * 7 6 5 35 35 H 1.09003 * 109.46770 * 299.99938 * 7 6 5 36 36 H 0.96990 * 120.00143 * 345.00111 * 8 7 6 37 37 H 1.08000 * 120.00181 * 359.97438 * 13 12 9 38 38 H 1.08003 * 119.99517 * 179.97438 * 14 13 12 39 39 H 1.09000 * 109.47088 * 329.99418 * 16 15 14 40 40 H 1.09007 * 109.46560 * 209.99923 * 16 15 14 41 41 H 0.96995 * 120.00207 * 179.97438 * 20 19 17 42 42 H 1.08002 * 120.00409 * 179.72430 * 25 15 14 43 43 H 1.08008 * 119.99912 * 180.25278 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5308 2.2202 -0.0005 5 7 3.4866 1.1672 0.0005 6 6 4.2190 2.4360 0.0011 7 6 5.7233 2.1565 0.0010 8 7 6.4557 3.4252 0.0021 9 16 8.0694 3.4494 0.3736 10 8 8.2180 2.6916 1.5664 11 8 8.4882 4.8020 0.2548 12 6 8.9092 2.5556 -0.8915 13 6 9.3681 3.2158 -2.0160 14 6 10.0274 2.5146 -3.0083 15 6 10.2274 1.1532 -2.8763 16 6 10.9457 0.3888 -3.9584 17 6 12.4247 0.3790 -3.6693 18 1 12.8063 0.8769 -2.7901 19 6 13.2911 -0.2603 -4.5304 20 7 12.8264 -0.8663 -5.6011 21 14 15.1252 -0.2658 -4.1762 22 1 15.3744 -0.9191 -2.8660 23 1 15.8335 -1.0150 -5.2450 24 1 15.6258 1.1317 -4.1357 25 6 9.7634 0.4920 -1.7545 26 6 9.1087 1.1940 -0.7599 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3635 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.9500 -0.8400 0.0004 31 1 3.9715 0.3272 0.0005 32 1 3.9554 3.0074 0.8911 33 1 3.9560 3.0078 -0.8889 34 1 5.9867 1.5853 -0.8892 35 1 5.9866 1.5845 0.8907 36 1 5.9956 4.2511 -0.2145 37 1 9.2115 4.2793 -2.1193 38 1 10.3856 3.0305 -3.8870 39 1 10.7667 0.8673 -4.9212 40 1 10.5743 -0.6356 -3.9871 41 1 13.4360 -1.3157 -6.2071 42 1 9.9157 -0.5724 -1.6535 43 1 8.7498 0.6781 0.1185 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001655758162.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:17 Heat of formation + Delta-G solvation = -87.251475 kcal Electronic energy + Delta-G solvation = -26369.461933 eV Core-core repulsion = 22348.376937 eV Total energy + Delta-G solvation = -4021.084996 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.29241 -38.86627 -37.29912 -36.75960 -35.84145 -34.88742 -34.21360 -33.72082 -31.60805 -30.63975 -29.11979 -27.48183 -26.45797 -23.78060 -23.12088 -22.37391 -21.37788 -20.95139 -19.56408 -19.07935 -18.00983 -17.41010 -16.58104 -16.48441 -16.37201 -16.15881 -15.30329 -15.17733 -15.02029 -14.64554 -14.59192 -14.41807 -14.33078 -13.85093 -13.49189 -13.17292 -12.89358 -12.64317 -12.59845 -12.42387 -12.26738 -12.08205 -12.00293 -11.83510 -11.74971 -11.52958 -11.01607 -10.94206 -10.63957 -10.58922 -10.52632 -9.92572 -9.77983 -9.71380 -9.64049 -9.25504 -8.65198 -8.57136 -8.44755 -6.20538 -4.25843 0.39434 1.25990 1.73267 2.26287 2.84740 3.02195 3.23617 3.27989 3.31315 3.68441 3.88843 4.06062 4.22701 4.34208 4.44180 4.68466 4.79487 4.99355 5.09281 5.14271 5.14947 5.17123 5.22098 5.39686 5.47998 5.59326 5.66632 5.76448 5.85322 6.01740 6.02842 6.18733 6.26762 6.44022 6.45381 6.67635 6.78017 6.85480 7.24103 7.37476 7.53937 7.57887 7.74215 8.09168 8.20959 8.78682 9.39307 10.89408 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013362 B = 0.002304 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.984589 B =12150.739151 C =13653.274642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.751 5.751 3 C 0.704 3.296 4 O -0.589 6.589 5 N -0.744 5.744 6 C 0.133 3.867 7 C 0.106 3.894 8 N -1.117 6.117 9 S 2.702 3.298 10 O -0.963 6.963 11 O -0.962 6.962 12 C -0.705 4.705 13 C -0.021 4.021 14 C -0.145 4.145 15 C 0.027 3.973 16 C 0.039 3.961 17 C -0.519 4.519 18 H 0.058 0.942 19 C 0.061 3.939 20 N -0.891 5.891 21 Si 0.899 3.101 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 C -0.146 4.146 26 C -0.026 4.026 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.399 0.601 31 H 0.400 0.600 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.419 0.581 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.035 0.965 40 H 0.035 0.965 41 H 0.265 0.735 42 H 0.129 0.871 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.844 1.300 10.221 23.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.407 5.407 3 C 0.403 3.597 4 O -0.467 6.467 5 N -0.401 5.401 6 C 0.007 3.993 7 C -0.022 4.022 8 N -0.877 5.877 9 S 2.794 3.206 10 O -0.953 6.953 11 O -0.952 6.952 12 C -0.795 4.795 13 C -0.040 4.040 14 C -0.164 4.164 15 C 0.027 3.973 16 C 0.003 3.997 17 C -0.557 4.557 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.530 5.530 21 Si 0.727 3.273 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.200 1.200 25 C -0.165 4.165 26 C -0.045 4.045 27 H 0.094 0.906 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.232 0.768 31 H 0.234 0.766 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.253 0.747 37 H 0.148 0.852 38 H 0.147 0.853 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.075 0.925 42 H 0.147 0.853 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -20.920 2.427 10.849 23.690 hybrid contribution 1.452 -0.992 -0.744 1.909 sum -19.469 1.435 10.105 21.982 Atomic orbital electron populations 1.21405 0.77978 1.02073 1.02341 1.44908 1.07888 1.07148 1.80712 1.15895 0.81557 0.84372 0.77828 1.90949 1.67813 1.30350 1.57586 1.44895 1.04827 1.09710 1.80667 1.21294 0.89071 0.85384 1.03554 1.21369 0.91606 0.85798 1.03384 1.55467 1.28423 1.14797 1.88971 1.01491 0.71745 0.73384 0.73953 1.93561 1.85123 1.73044 1.43524 1.93580 1.80246 1.34201 1.87190 1.30293 1.23557 1.07210 1.18407 1.20786 0.93051 0.99070 0.91116 1.21264 1.00758 0.94586 0.99831 1.21137 0.87042 0.93968 0.95166 1.18539 0.94679 0.95157 0.91344 1.20923 0.90200 1.35252 1.09291 0.92327 1.25003 0.99302 0.94977 0.94857 1.69931 1.35451 1.34805 1.12774 0.86531 0.84370 0.78396 0.78040 1.20026 1.21100 1.20022 1.21245 1.00260 1.00671 0.94274 1.20777 0.94574 0.91706 0.97463 0.90574 0.92342 0.92315 0.76786 0.76598 0.90533 0.90594 0.90579 0.89425 0.74650 0.85175 0.85303 0.94707 0.94722 0.92543 0.85325 0.85255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.56 10.70 59.84 0.64 1.20 16 2 N -0.75 -4.53 5.72 -72.07 -0.41 -4.94 16 3 C 0.70 6.64 8.57 -86.91 -0.74 5.89 16 4 O -0.59 -8.18 16.34 5.29 0.09 -8.09 16 5 N -0.74 -5.09 5.56 -65.22 -0.36 -5.45 16 6 C 0.13 0.98 5.82 -4.04 -0.02 0.96 16 7 C 0.11 0.76 6.34 -4.04 -0.03 0.73 16 8 N -1.12 -9.58 6.00 -10.61 -0.06 -9.64 16 9 S 2.70 34.09 5.74 -107.50 -0.62 33.48 16 10 O -0.96 -14.30 16.75 -57.17 -0.96 -15.26 16 11 O -0.96 -14.65 17.28 -57.17 -0.99 -15.64 16 12 C -0.70 -10.27 5.95 -39.58 -0.24 -10.50 16 13 C -0.02 -0.32 9.52 -39.58 -0.38 -0.70 16 14 C -0.15 -2.60 9.70 -39.58 -0.38 -2.99 16 15 C 0.03 0.54 5.07 -104.62 -0.53 0.01 16 16 C 0.04 0.94 5.10 -29.03 -0.15 0.79 16 17 C -0.52 -13.81 9.09 -34.44 -0.31 -14.12 16 18 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -25.16 13.29 55.43 0.74 -24.42 16 21 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 22 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 23 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 25 C -0.15 -2.53 9.70 -39.59 -0.38 -2.92 16 26 C -0.03 -0.38 9.52 -39.58 -0.38 -0.76 16 27 H 0.08 0.17 8.14 -51.92 -0.42 -0.25 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.40 1.17 8.84 -40.82 -0.36 0.81 16 31 H 0.40 1.57 8.49 -40.82 -0.35 1.23 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.09 0.59 7.75 -51.93 -0.40 0.19 16 36 H 0.42 2.79 8.65 -34.47 -0.30 2.50 16 37 H 0.13 1.74 7.62 -52.49 -0.40 1.34 16 38 H 0.13 2.20 8.06 -52.48 -0.42 1.78 16 39 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 40 H 0.03 0.86 8.08 -51.93 -0.42 0.44 16 41 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.13 2.11 8.06 -52.49 -0.42 1.69 16 43 H 0.13 1.58 7.62 -52.48 -0.40 1.18 16 LS Contribution 384.24 15.07 5.79 5.79 Total: -1.00 -36.80 384.24 -10.78 -47.57 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -5.97 Total: 1.61 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: -3.00 Total: -20.85 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: -0.10 Total: -44.45 kcal Atomic # 8 Polarization: -37.13 SS G_CDS: -1.86 Total: -38.98 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 34.09 SS G_CDS: -0.62 Total: 33.48 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.80 -10.78 -47.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001655758162.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.678 kcal (2) G-P(sol) polarization free energy of solvation -36.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds