Wall clock time and date at job start Sat Apr 11 2020 06:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34785 * 117.00178 * 2 1 4 4 O 1.21560 * 120.00150 * 0.02562 * 3 2 1 5 5 C 1.46996 * 120.00527 * 180.02562 * 3 2 1 6 6 C 1.38037 * 123.12992 * 270.00750 * 5 3 2 7 7 C 1.50700 * 127.26852 * 359.97438 * 6 5 3 8 8 N 1.46898 * 109.47146 * 90.00297 * 7 6 5 9 9 C 1.46895 * 110.99988 * 294.30134 * 8 7 6 10 10 C 1.53241 * 109.33904 * 172.74516 * 9 8 7 11 11 N 1.47080 * 108.51969 * 53.82958 * 10 9 8 12 12 C 1.36940 * 120.87838 * 128.79893 * 11 10 9 13 13 H 1.08003 * 119.99667 * 206.65813 * 12 11 10 14 14 C 1.38809 * 120.00419 * 26.64723 * 12 11 10 15 15 N 1.31618 * 119.99631 * 17.04292 * 14 12 11 16 16 Si 1.86802 * 120.00174 * 197.03729 * 14 12 11 17 17 H 1.48495 * 109.47044 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46883 * 120.00424 * 16 14 12 19 19 H 1.48499 * 109.47190 * 240.00383 * 16 14 12 20 20 C 1.47077 * 118.23643 * 308.81243 * 11 10 9 21 21 C 1.46897 * 111.00167 * 169.99622 * 8 7 6 22 22 S 1.71989 * 105.45866 * 179.97438 * 6 5 3 23 23 N 1.69458 * 96.13051 * 359.97438 * 22 6 5 24 24 C 1.29848 * 107.90344 * 359.72067 * 23 22 6 25 25 O 1.35787 * 121.61629 * 180.23381 * 24 23 22 26 26 C 1.42901 * 117.00239 * 0.27455 * 25 24 23 27 27 H 1.08998 * 109.47509 * 59.99657 * 1 2 3 28 28 H 1.09002 * 109.47194 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46864 * 299.99180 * 1 2 3 30 30 H 1.09004 * 109.47053 * 210.00567 * 7 6 5 31 31 H 1.09001 * 109.47300 * 330.00256 * 7 6 5 32 32 H 1.08997 * 109.49425 * 292.70459 * 9 8 7 33 33 H 1.08999 * 109.49236 * 52.78853 * 9 8 7 34 34 H 1.08998 * 109.62771 * 294.12216 * 10 9 8 35 35 H 1.08997 * 109.78764 * 173.63484 * 10 9 8 36 36 H 0.97010 * 119.99850 * 179.97438 * 15 14 12 37 37 H 1.08999 * 109.63219 * 291.47502 * 20 11 10 38 38 H 1.09004 * 109.78500 * 170.99159 * 20 11 10 39 39 H 1.08998 * 109.49521 * 307.21882 * 21 8 7 40 40 H 1.09003 * 109.49011 * 67.26489 * 21 8 7 41 41 H 1.08999 * 109.47129 * 300.00154 * 26 25 24 42 42 H 1.09000 * 109.47277 * 59.99866 * 26 25 24 43 43 H 1.09001 * 109.47297 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4019 2.2205 0.0005 5 6 3.5318 1.2779 -0.0006 6 6 4.2857 1.3171 1.1551 7 6 3.7814 1.2907 2.5750 8 7 3.6896 -0.1010 3.0362 9 6 2.6686 -0.8396 2.2813 10 6 2.7287 -2.3224 2.6632 11 7 2.6219 -2.4328 4.1259 12 6 1.7076 -3.2737 4.7024 13 1 1.3269 -3.0617 5.6906 14 6 1.2700 -4.3984 4.0165 15 7 1.9530 -4.8471 2.9848 16 14 -0.2880 -5.2752 4.5580 17 1 -0.8658 -4.5767 5.7342 18 1 -1.2720 -5.2680 3.4459 19 1 0.0349 -6.6777 4.9241 20 6 3.5227 -1.6158 4.9531 21 6 3.4313 -0.1609 4.4810 22 16 5.9220 1.4024 0.6324 23 7 5.5828 1.3841 -1.0278 24 6 4.2944 1.3108 -1.1712 25 8 3.7158 1.2739 -2.3991 26 6 4.5892 1.3133 -3.5294 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 4.4704 1.8411 3.2156 31 1 2.7956 1.7538 2.6191 32 1 1.6819 -0.4424 2.5194 33 1 2.8567 -0.7312 1.2131 34 1 3.6762 -2.7476 2.3322 35 1 1.9033 -2.8580 2.1943 36 1 1.6474 -5.6334 2.5057 37 1 4.5465 -1.9731 4.8422 38 1 3.2236 -1.6808 5.9992 39 1 4.1725 0.4398 5.0082 40 1 2.4342 0.2274 4.6886 41 1 5.1707 2.2350 -3.5072 42 1 5.2635 0.4575 -3.4975 43 1 3.9998 1.2771 -4.4455 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001658824000.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:20 Heat of formation + Delta-G solvation = -28.196340 kcal Electronic energy + Delta-G solvation = -29001.700725 eV Core-core repulsion = 24983.176553 eV Total energy + Delta-G solvation = -4018.524173 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.95771 -39.69933 -38.32802 -36.88738 -36.22213 -34.66304 -32.31348 -30.94047 -29.97141 -28.89251 -27.82056 -27.18737 -25.39166 -23.56460 -22.75321 -22.46988 -22.09548 -19.82586 -19.22787 -18.50406 -17.84193 -17.28860 -16.86602 -16.44505 -16.30192 -15.98707 -15.28928 -15.08083 -14.58055 -14.38240 -14.15674 -13.67414 -13.61361 -13.45637 -13.25741 -13.05021 -12.98241 -12.50718 -12.24810 -12.10726 -11.94837 -11.53971 -11.36333 -11.26120 -11.19181 -11.05439 -10.81494 -10.64442 -10.51692 -10.44918 -10.35061 -10.09161 -9.84135 -9.63382 -9.57787 -8.53097 -8.51645 -8.02264 -6.68430 -5.78955 -3.20246 0.32369 1.09786 1.43159 1.98305 2.06811 2.87252 2.90763 3.35518 3.43864 3.45730 4.18752 4.46404 4.49330 4.71978 4.78215 4.95569 5.05363 5.07199 5.22194 5.30331 5.33726 5.36147 5.39968 5.42897 5.46568 5.68132 5.83106 5.87014 5.90930 6.07596 6.22591 6.29715 6.32294 6.53959 6.70240 6.83183 6.88258 7.19959 7.37577 7.58617 7.67952 7.68748 7.80144 8.42425 9.20164 9.83471 10.41732 11.29751 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013878 B = 0.003911 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.116984 B = 7158.361812 C = 7954.499453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.334 6.334 3 C 0.552 3.448 4 O -0.496 6.496 5 C -0.208 4.208 6 C -0.091 4.091 7 C 0.112 3.888 8 N -0.525 5.525 9 C 0.027 3.973 10 C 0.183 3.817 11 N -0.595 5.595 12 C -0.252 4.252 13 H 0.066 0.934 14 C 0.003 3.997 15 N -0.901 5.901 16 Si 0.900 3.100 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.290 1.290 20 C 0.150 3.850 21 C 0.044 3.956 22 S 0.371 5.629 23 N -0.542 5.542 24 C 0.349 3.651 25 O -0.294 6.294 26 C 0.037 3.963 27 H 0.062 0.938 28 H 0.108 0.892 29 H 0.064 0.936 30 H 0.099 0.901 31 H 0.055 0.945 32 H 0.024 0.976 33 H 0.078 0.922 34 H 0.025 0.975 35 H 0.090 0.910 36 H 0.253 0.747 37 H 0.027 0.973 38 H 0.058 0.942 39 H 0.066 0.934 40 H 0.031 0.969 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.055 14.169 -7.919 17.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.249 6.249 3 C 0.391 3.609 4 O -0.383 6.383 5 C -0.229 4.229 6 C -0.222 4.222 7 C -0.018 4.018 8 N -0.251 5.251 9 C -0.102 4.102 10 C 0.057 3.943 11 N -0.319 5.319 12 C -0.382 4.382 13 H 0.084 0.916 14 C -0.196 4.196 15 N -0.546 5.546 16 Si 0.730 3.270 17 H -0.203 1.203 18 H -0.216 1.216 19 H -0.217 1.217 20 C 0.023 3.977 21 C -0.085 4.085 22 S 0.523 5.477 23 N -0.382 5.382 24 C 0.135 3.865 25 O -0.199 6.199 26 C -0.058 4.058 27 H 0.081 0.919 28 H 0.126 0.874 29 H 0.082 0.918 30 H 0.117 0.883 31 H 0.073 0.927 32 H 0.043 0.957 33 H 0.096 0.904 34 H 0.043 0.957 35 H 0.108 0.892 36 H 0.063 0.937 37 H 0.045 0.955 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.050 0.950 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.103 14.168 -8.361 17.919 hybrid contribution -3.398 -0.186 0.002 3.403 sum 3.705 13.982 -8.359 16.706 Atomic orbital electron populations 1.23364 0.75787 1.04460 1.02237 1.86800 1.23639 1.31399 1.83082 1.19874 0.87183 0.82026 0.71786 1.90850 1.66312 1.36249 1.44923 1.18345 0.92919 1.20559 0.91058 1.26044 1.00441 0.96633 0.99034 1.20684 1.00484 0.93480 0.87106 1.62136 1.49681 1.08124 1.05186 1.23284 0.90884 0.98580 0.97442 1.20817 1.01093 0.88394 0.84005 1.44163 1.39252 1.47370 1.01083 1.19222 1.15565 1.01481 1.01935 0.91616 1.25009 0.99382 0.96158 0.99018 1.70042 1.37597 1.24190 1.22723 0.86263 0.83443 0.79358 0.77950 1.20332 1.21590 1.21707 1.20955 0.94162 0.88106 0.94493 1.22701 0.98690 1.00661 0.86418 1.83870 1.03410 1.65561 0.94858 1.76143 1.14681 1.34232 1.13159 1.19471 0.87043 0.93475 0.86467 1.86276 1.34834 1.87720 1.11082 1.23013 0.94657 1.02698 0.85397 0.91936 0.87378 0.91767 0.88277 0.92666 0.95738 0.90423 0.95671 0.89176 0.93654 0.95497 0.92391 0.91595 0.95022 0.92020 0.91763 0.87956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 10.57 101.05 1.07 1.53 16 2 O -0.33 -5.48 7.48 -40.72 -0.30 -5.79 16 3 C 0.55 9.24 6.04 34.28 0.21 9.45 16 4 O -0.50 -8.97 16.90 -19.31 -0.33 -9.29 16 5 C -0.21 -3.26 4.93 -105.86 -0.52 -3.78 16 6 C -0.09 -1.28 5.51 -34.38 -0.19 -1.47 16 7 C 0.11 1.55 5.28 -4.98 -0.03 1.53 16 8 N -0.53 -8.95 4.62 -235.77 -1.09 -10.04 16 9 C 0.03 0.52 4.06 -3.70 -0.02 0.50 16 10 C 0.18 4.39 5.43 -3.60 -0.02 4.37 16 11 N -0.60 -14.76 3.04 -172.02 -0.52 -15.28 16 12 C -0.25 -6.82 9.63 -15.06 -0.15 -6.96 16 13 H 0.07 1.74 7.88 -52.48 -0.41 1.33 16 14 C 0.00 0.08 4.93 -17.43 -0.09 -0.01 16 15 N -0.90 -25.85 11.15 55.49 0.62 -25.23 16 16 Si 0.90 21.34 29.59 -169.99 -5.03 16.31 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 C 0.15 3.05 6.69 -3.61 -0.02 3.02 16 21 C 0.04 0.74 5.62 -3.71 -0.02 0.72 16 22 S 0.37 4.53 23.69 -107.50 -2.55 1.98 16 23 N -0.54 -7.54 11.05 29.45 0.33 -7.22 16 24 C 0.35 5.21 7.44 -17.83 -0.13 5.08 16 25 O -0.29 -4.11 10.21 -19.07 -0.19 -4.30 16 26 C 0.04 0.36 10.46 101.05 1.06 1.42 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.10 1.08 7.97 -51.93 -0.41 0.66 16 31 H 0.06 0.80 7.83 -51.93 -0.41 0.40 16 32 H 0.02 0.50 8.00 -51.93 -0.42 0.08 16 33 H 0.08 1.49 3.89 -51.93 -0.20 1.29 16 34 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.09 2.40 6.11 -51.93 -0.32 2.08 16 36 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 37 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.06 1.13 7.96 -51.93 -0.41 0.71 16 39 H 0.07 0.89 7.99 -51.93 -0.41 0.48 16 40 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.56 8.13 -51.93 -0.42 0.13 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 364.83 15.07 5.50 5.50 Total: -1.00 -32.24 364.83 -8.36 -40.59 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -5.94 Total: -2.63 kcal Atomic # 6 Polarization: 14.25 SS G_CDS: 1.15 Total: 15.40 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: -0.67 Total: -57.77 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.83 Total: -19.39 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Atomic # 16 Polarization: 4.53 SS G_CDS: -2.55 Total: 1.98 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.24 -8.36 -40.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658824000.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.396 kcal (2) G-P(sol) polarization free energy of solvation -32.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds