Wall clock time and date at job start Sat Apr 11 2020 06:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34785 * 117.00178 * 2 1 4 4 O 1.21560 * 120.00150 * 0.02562 * 3 2 1 5 5 C 1.46996 * 120.00527 * 180.02562 * 3 2 1 6 6 C 1.38037 * 123.12992 * 270.00750 * 5 3 2 7 7 C 1.50700 * 127.26852 * 359.97438 * 6 5 3 8 8 N 1.46898 * 109.47146 * 90.00297 * 7 6 5 9 9 C 1.46895 * 110.99988 * 294.30134 * 8 7 6 10 10 C 1.53241 * 109.33904 * 172.74516 * 9 8 7 11 11 N 1.47080 * 108.51969 * 53.82958 * 10 9 8 12 12 C 1.36940 * 120.87838 * 128.79893 * 11 10 9 13 13 H 1.08003 * 119.99667 * 206.65813 * 12 11 10 14 14 C 1.38809 * 120.00419 * 26.64723 * 12 11 10 15 15 N 1.31618 * 119.99631 * 17.04292 * 14 12 11 16 16 Si 1.86802 * 120.00174 * 197.03729 * 14 12 11 17 17 H 1.48495 * 109.47044 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46883 * 120.00424 * 16 14 12 19 19 H 1.48499 * 109.47190 * 240.00383 * 16 14 12 20 20 C 1.47077 * 118.23643 * 308.81243 * 11 10 9 21 21 C 1.46897 * 111.00167 * 169.99622 * 8 7 6 22 22 S 1.71989 * 105.45866 * 179.97438 * 6 5 3 23 23 N 1.69458 * 96.13051 * 359.97438 * 22 6 5 24 24 C 1.29848 * 107.90344 * 359.72067 * 23 22 6 25 25 O 1.35787 * 121.61629 * 180.23381 * 24 23 22 26 26 C 1.42901 * 117.00239 * 0.27455 * 25 24 23 27 27 H 1.08998 * 109.47509 * 59.99657 * 1 2 3 28 28 H 1.09002 * 109.47194 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46864 * 299.99180 * 1 2 3 30 30 H 1.09004 * 109.47053 * 210.00567 * 7 6 5 31 31 H 1.09001 * 109.47300 * 330.00256 * 7 6 5 32 32 H 1.08997 * 109.49425 * 292.70459 * 9 8 7 33 33 H 1.08999 * 109.49236 * 52.78853 * 9 8 7 34 34 H 1.08998 * 109.62771 * 294.12216 * 10 9 8 35 35 H 1.08997 * 109.78764 * 173.63484 * 10 9 8 36 36 H 0.97010 * 119.99850 * 179.97438 * 15 14 12 37 37 H 1.08999 * 109.63219 * 291.47502 * 20 11 10 38 38 H 1.09004 * 109.78500 * 170.99159 * 20 11 10 39 39 H 1.08998 * 109.49521 * 307.21882 * 21 8 7 40 40 H 1.09003 * 109.49011 * 67.26489 * 21 8 7 41 41 H 1.08999 * 109.47129 * 300.00154 * 26 25 24 42 42 H 1.09000 * 109.47277 * 59.99866 * 26 25 24 43 43 H 1.09001 * 109.47297 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4019 2.2205 0.0005 5 6 3.5318 1.2779 -0.0006 6 6 4.2857 1.3171 1.1551 7 6 3.7814 1.2907 2.5750 8 7 3.6896 -0.1010 3.0362 9 6 2.6686 -0.8396 2.2813 10 6 2.7287 -2.3224 2.6632 11 7 2.6219 -2.4328 4.1259 12 6 1.7076 -3.2737 4.7024 13 1 1.3269 -3.0617 5.6906 14 6 1.2700 -4.3984 4.0165 15 7 1.9530 -4.8471 2.9848 16 14 -0.2880 -5.2752 4.5580 17 1 -0.8658 -4.5767 5.7342 18 1 -1.2720 -5.2680 3.4459 19 1 0.0349 -6.6777 4.9241 20 6 3.5227 -1.6158 4.9531 21 6 3.4313 -0.1609 4.4810 22 16 5.9220 1.4024 0.6324 23 7 5.5828 1.3841 -1.0278 24 6 4.2944 1.3108 -1.1712 25 8 3.7158 1.2739 -2.3991 26 6 4.5892 1.3133 -3.5294 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 4.4704 1.8411 3.2156 31 1 2.7956 1.7538 2.6191 32 1 1.6819 -0.4424 2.5194 33 1 2.8567 -0.7312 1.2131 34 1 3.6762 -2.7476 2.3322 35 1 1.9033 -2.8580 2.1943 36 1 1.6474 -5.6334 2.5057 37 1 4.5465 -1.9731 4.8422 38 1 3.2236 -1.6808 5.9992 39 1 4.1725 0.4398 5.0082 40 1 2.4342 0.2274 4.6886 41 1 5.1707 2.2350 -3.5072 42 1 5.2635 0.4575 -3.4975 43 1 3.9998 1.2771 -4.4455 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001658824000.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:19 Heat of formation + Delta-G solvation = -51.677606 kcal Electronic energy + Delta-G solvation = -29002.718949 eV Core-core repulsion = 24983.176553 eV Total energy + Delta-G solvation = -4019.542397 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.11337 -40.81046 -39.78724 -38.03772 -37.48156 -36.29878 -33.83457 -32.51551 -31.62954 -30.14390 -28.77936 -28.49982 -26.90083 -25.00132 -24.31093 -23.86619 -23.36748 -21.01119 -20.87166 -19.61865 -18.94332 -18.70696 -18.48139 -17.63384 -17.32815 -17.23178 -16.92639 -16.28695 -16.13185 -15.71680 -15.33580 -15.29594 -15.03951 -15.01642 -14.57080 -14.46120 -14.29493 -13.73841 -13.51280 -13.21763 -13.14781 -12.99192 -12.91828 -12.64168 -12.44342 -12.32883 -12.23001 -12.18191 -12.02203 -11.93125 -11.87158 -11.72093 -11.56314 -11.33920 -10.79052 -10.57481 -9.51404 -9.43537 -8.66746 -7.85173 -5.29445 -0.76894 0.07584 0.38244 0.81164 0.89704 1.46784 1.49020 1.59100 1.75732 1.93298 2.52416 2.91178 3.30069 3.35602 3.56435 3.71288 3.73542 3.97085 4.15742 4.20097 4.24528 4.25610 4.32025 4.33569 4.38593 4.40932 4.60261 4.64683 4.65573 4.67628 4.75163 4.88931 4.97178 5.05365 5.12137 5.22396 5.41303 5.63903 5.70055 5.86568 6.01839 6.08405 6.39690 6.44037 7.15711 7.86718 8.40628 9.21874 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013878 B = 0.003911 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.116984 B = 7158.361812 C = 7954.499453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.349 6.349 3 C 0.554 3.446 4 O -0.517 6.517 5 C -0.233 4.233 6 C -0.102 4.102 7 C 0.115 3.885 8 N -0.532 5.532 9 C 0.050 3.950 10 C 0.194 3.806 11 N -0.614 5.614 12 C -0.262 4.262 13 H 0.069 0.931 14 C -0.048 4.048 15 N -0.934 5.934 16 Si 0.963 3.037 17 H -0.267 1.267 18 H -0.290 1.290 19 H -0.293 1.293 20 C 0.143 3.857 21 C 0.054 3.946 22 S 0.436 5.564 23 N -0.554 5.554 24 C 0.340 3.660 25 O -0.312 6.312 26 C 0.032 3.968 27 H 0.076 0.924 28 H 0.118 0.882 29 H 0.063 0.937 30 H 0.140 0.860 31 H 0.051 0.949 32 H 0.014 0.986 33 H 0.081 0.919 34 H -0.005 1.005 35 H 0.056 0.944 36 H 0.249 0.751 37 H 0.021 0.979 38 H 0.065 0.935 39 H 0.112 0.888 40 H 0.028 0.972 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.810 15.811 -7.241 18.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.265 6.265 3 C 0.395 3.605 4 O -0.406 6.406 5 C -0.254 4.254 6 C -0.233 4.233 7 C -0.013 4.013 8 N -0.258 5.258 9 C -0.079 4.079 10 C 0.068 3.932 11 N -0.338 5.338 12 C -0.392 4.392 13 H 0.087 0.913 14 C -0.244 4.244 15 N -0.581 5.581 16 Si 0.792 3.208 17 H -0.191 1.191 18 H -0.217 1.217 19 H -0.220 1.220 20 C 0.018 3.982 21 C -0.074 4.074 22 S 0.588 5.412 23 N -0.395 5.395 24 C 0.127 3.873 25 O -0.218 6.218 26 C -0.062 4.062 27 H 0.095 0.905 28 H 0.137 0.863 29 H 0.081 0.919 30 H 0.158 0.842 31 H 0.069 0.931 32 H 0.033 0.967 33 H 0.099 0.901 34 H 0.013 0.987 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.039 0.961 38 H 0.083 0.917 39 H 0.130 0.870 40 H 0.046 0.954 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 7.874 15.838 -7.672 19.279 hybrid contribution -3.518 -0.681 -0.212 3.589 sum 4.356 15.157 -7.884 17.631 Atomic orbital electron populations 1.23563 0.74474 1.05416 1.02917 1.86780 1.25161 1.31635 1.82908 1.20101 0.87735 0.81688 0.71005 1.90821 1.66941 1.36734 1.46070 1.18484 0.92504 1.22325 0.92109 1.26214 1.01705 0.96542 0.98846 1.20797 1.01523 0.91417 0.87611 1.62015 1.48255 1.10265 1.05237 1.22822 0.91286 0.95823 0.97927 1.20497 0.97954 0.90918 0.83865 1.44431 1.40027 1.47716 1.01676 1.19559 1.15973 1.01618 1.02031 0.91339 1.25736 1.02098 0.97166 0.99379 1.70199 1.39139 1.24661 1.24068 0.85270 0.79932 0.77892 0.77734 1.19109 1.21653 1.22045 1.21149 0.92812 0.89753 0.94506 1.22590 1.00085 0.98357 0.86415 1.83619 1.01086 1.63283 0.93203 1.76039 1.14315 1.34277 1.14851 1.19491 0.87142 0.93899 0.86760 1.86255 1.36271 1.87630 1.11647 1.23290 0.94979 1.02955 0.85008 0.90494 0.86335 0.91863 0.84192 0.93075 0.96749 0.90119 0.98736 0.92591 0.94155 0.96102 0.91664 0.87023 0.95382 0.91404 0.91828 0.85281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 10.57 113.37 1.20 1.98 16 2 O -0.35 -11.62 7.48 -56.96 -0.43 -12.05 16 3 C 0.55 18.51 6.04 70.12 0.42 18.93 16 4 O -0.52 -18.65 16.90 19.64 0.33 -18.32 16 5 C -0.23 -7.12 4.93 -20.67 -0.10 -7.22 16 6 C -0.10 -2.68 5.51 25.64 0.14 -2.54 16 7 C 0.12 2.86 5.28 85.56 0.45 3.32 16 8 N -0.53 -17.07 4.62 -899.85 -4.16 -21.23 16 9 C 0.05 1.98 4.06 86.38 0.35 2.33 16 10 C 0.19 9.58 5.43 86.35 0.47 10.04 16 11 N -0.61 -30.73 3.04 -698.14 -2.12 -32.85 16 12 C -0.26 -14.26 9.63 84.03 0.81 -13.45 16 13 H 0.07 3.62 7.88 -2.91 -0.02 3.59 16 14 C -0.05 -2.69 4.93 84.86 0.42 -2.27 16 15 N -0.93 -55.28 11.15 21.65 0.24 -55.04 16 16 Si 0.96 44.42 29.59 68.60 2.03 46.45 16 17 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 18 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 19 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 20 C 0.14 5.67 6.69 86.35 0.58 6.25 16 21 C 0.05 1.66 5.62 86.38 0.49 2.14 16 22 S 0.44 9.50 23.69 -56.49 -1.34 8.16 16 23 N -0.55 -14.54 11.05 -174.75 -1.93 -16.47 16 24 C 0.34 9.87 7.44 85.35 0.63 10.50 16 25 O -0.31 -8.59 10.21 -91.17 -0.93 -9.52 16 26 C 0.03 0.58 10.46 113.37 1.19 1.76 16 27 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 29 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 30 H 0.14 2.35 7.97 -2.38 -0.02 2.33 16 31 H 0.05 1.36 7.83 -2.39 -0.02 1.34 16 32 H 0.01 0.59 8.00 -2.39 -0.02 0.57 16 33 H 0.08 3.13 3.89 -2.39 -0.01 3.13 16 34 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 35 H 0.06 3.12 6.11 -2.39 -0.01 3.11 16 36 H 0.25 14.27 8.31 -92.70 -0.77 13.50 16 37 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.06 2.45 7.96 -2.39 -0.02 2.43 16 39 H 0.11 2.46 7.99 -2.39 -0.02 2.44 16 40 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.07 1.14 8.13 -2.39 -0.02 1.12 16 42 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -71.33 364.83 -0.22 -71.56 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: 1.03 Total: 7.52 kcal Atomic # 6 Polarization: 24.74 SS G_CDS: 7.04 Total: 31.79 kcal Atomic # 7 Polarization: -117.62 SS G_CDS: -7.97 Total: -125.59 kcal Atomic # 8 Polarization: -38.86 SS G_CDS: -1.02 Total: -39.88 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: 9.50 SS G_CDS: -1.34 Total: 8.16 kcal Total: -71.33 -0.22 -71.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658824000.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.878 kcal (2) G-P(sol) polarization free energy of solvation -71.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds