Wall clock time and date at job start Sat Apr 11 2020 06:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34775 * 119.99904 * 2 1 4 4 O 1.21582 * 120.00038 * 0.02562 * 3 2 1 5 5 N 1.34776 * 119.99690 * 179.97438 * 3 2 1 6 6 C 1.46505 * 119.99676 * 180.02562 * 5 3 2 7 7 C 1.53000 * 109.46685 * 180.02562 * 6 5 3 8 8 N 1.46505 * 109.46685 * 180.02562 * 7 6 5 9 9 S 1.65599 * 119.99881 * 164.99772 * 8 7 6 10 10 O 1.42101 * 104.27827 * 308.92876 * 9 8 7 11 11 O 1.42094 * 104.27842 * 181.07176 * 9 8 7 12 12 C 1.81409 * 104.44840 * 64.99906 * 9 8 7 13 13 C 1.50707 * 109.47007 * 179.97438 * 12 9 8 14 14 C 1.38635 * 119.74865 * 270.25543 * 13 12 9 15 15 C 1.37613 * 120.24483 * 180.26071 * 14 13 12 16 16 C 1.40709 * 119.74954 * 359.46596 * 15 14 13 17 17 C 1.41391 * 120.24881 * 180.29949 * 16 15 14 18 18 H 1.08006 * 120.00159 * 24.38124 * 17 16 15 19 19 C 1.39949 * 120.00394 * 204.37955 * 17 16 15 20 20 N 1.30826 * 119.99793 * 17.83971 * 19 17 16 21 21 Si 1.86793 * 120.00334 * 197.84214 * 19 17 16 22 22 H 1.48504 * 109.47163 * 59.99946 * 21 19 17 23 23 H 1.48493 * 109.47398 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47268 * 300.00028 * 21 19 17 25 25 C 1.40717 * 119.50871 * 0.27696 * 16 15 14 26 26 C 1.37615 * 119.74803 * 359.97438 * 25 16 15 27 27 H 1.09002 * 109.47513 * 299.99644 * 1 2 3 28 28 H 1.08999 * 109.47005 * 60.00070 * 1 2 3 29 29 H 1.09004 * 109.47125 * 179.97438 * 1 2 3 30 30 H 0.97003 * 119.99498 * 180.02562 * 2 1 3 31 31 H 0.96999 * 120.00247 * 0.02562 * 5 3 2 32 32 H 1.08999 * 109.46779 * 60.00542 * 6 5 3 33 33 H 1.08998 * 109.46701 * 299.99797 * 6 5 3 34 34 H 1.09000 * 109.47614 * 59.99738 * 7 6 5 35 35 H 1.09002 * 109.47602 * 299.99592 * 7 6 5 36 36 H 0.96990 * 120.00001 * 344.99949 * 8 7 6 37 37 H 1.08994 * 109.47050 * 60.00105 * 12 9 8 38 38 H 1.09000 * 109.47163 * 299.99679 * 12 9 8 39 39 H 1.07998 * 119.87355 * 0.02562 * 14 13 12 40 40 H 1.08008 * 120.12380 * 179.73700 * 15 14 13 41 41 H 0.97001 * 120.00110 * 179.97438 * 20 19 17 42 42 H 1.08004 * 120.12753 * 180.02562 * 25 16 15 43 43 H 1.08003 * 119.88271 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5309 2.2201 0.0005 5 7 3.4866 1.1671 0.0005 6 6 4.2191 2.4359 0.0011 7 6 5.7234 2.1563 0.0010 8 7 6.4559 3.4251 0.0021 9 16 8.0695 3.4492 0.3735 10 8 8.1579 2.7340 1.5983 11 8 8.4255 4.8228 0.3000 12 6 8.8566 2.5149 -0.9675 13 6 10.3455 2.4666 -0.7395 14 6 11.1543 3.4636 -1.2627 15 6 12.5157 3.4268 -1.0653 16 6 13.0849 2.3781 -0.3196 17 6 14.4817 2.3333 -0.1049 18 1 15.0640 3.2420 -0.1467 19 6 15.1099 1.1115 0.1619 20 7 14.5034 -0.0120 -0.1238 21 14 16.8142 1.0847 0.9260 22 1 16.7756 1.7639 2.2460 23 1 17.2537 -0.3222 1.1065 24 1 17.7679 1.7910 0.0335 25 6 12.2537 1.3744 0.2113 26 6 10.8954 1.4286 -0.0031 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.9500 -0.8401 -0.0004 31 1 3.9716 0.3271 0.0005 32 1 3.9555 3.0072 0.8912 33 1 3.9561 3.0076 -0.8889 34 1 5.9867 1.5850 -0.8892 35 1 5.9867 1.5843 0.8907 36 1 5.9957 4.2509 -0.2146 37 1 8.6509 3.0033 -1.9199 38 1 8.4584 1.5004 -0.9859 39 1 10.7146 4.2702 -1.8307 40 1 13.1444 4.2023 -1.4774 41 1 14.9389 -0.8588 0.0607 42 1 12.6799 0.5651 0.7856 43 1 10.2553 0.6597 0.4038 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662673207.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:23 Heat of formation + Delta-G solvation = -89.386582 kcal Electronic energy + Delta-G solvation = -26254.092426 eV Core-core repulsion = 22232.914845 eV Total energy + Delta-G solvation = -4021.177581 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.26677 -37.81294 -36.90249 -36.50836 -35.50524 -34.86627 -34.20359 -34.08441 -31.54427 -29.46940 -29.00895 -27.87824 -26.40470 -24.27770 -22.98526 -21.34762 -21.19719 -20.43387 -19.17901 -19.00197 -17.54045 -17.46730 -16.55779 -16.28278 -16.23790 -15.89681 -15.41853 -14.99120 -14.87696 -14.60883 -14.51861 -14.28749 -13.92736 -13.82562 -13.45528 -12.71515 -12.63169 -12.49713 -12.24892 -12.18906 -12.10363 -11.79092 -11.66316 -11.60845 -11.58652 -11.55815 -11.17364 -10.85801 -10.79776 -10.61032 -10.33301 -9.87825 -9.71127 -9.59090 -9.55492 -9.24795 -9.22290 -7.64636 -7.48206 -6.95339 -4.52567 0.53802 2.28126 2.61445 2.87004 2.93113 2.98525 3.00461 3.05670 3.10123 3.80266 3.92117 4.12442 4.34535 4.45203 4.52753 4.77071 4.79714 5.05749 5.11681 5.14752 5.27780 5.38388 5.43408 5.51377 5.55858 5.73100 6.01888 6.02893 6.07836 6.16970 6.22865 6.47682 6.80614 6.88601 6.90185 7.06947 7.15585 7.42949 7.60295 7.63739 7.86479 7.87857 8.09998 8.23305 8.44845 8.69415 8.77300 9.97822 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.023493 B = 0.001962 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.549639 B =14266.798508 C =14993.661290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.752 5.752 3 C 0.703 3.297 4 O -0.589 6.589 5 N -0.744 5.744 6 C 0.132 3.868 7 C 0.105 3.895 8 N -1.127 6.127 9 S 2.578 3.422 10 O -0.961 6.961 11 O -0.961 6.961 12 C -0.518 4.518 13 C -0.239 4.239 14 C -0.068 4.068 15 C -0.225 4.225 16 C 0.117 3.883 17 C -0.448 4.448 18 H 0.083 0.917 19 C 0.074 3.926 20 N -0.781 5.781 21 Si 0.913 3.087 22 H -0.261 1.261 23 H -0.277 1.277 24 H -0.263 1.263 25 C -0.167 4.167 26 C -0.080 4.080 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.399 0.601 31 H 0.399 0.601 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.414 0.586 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.285 0.715 42 H 0.123 0.877 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.132 -4.636 -1.899 19.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.407 5.407 3 C 0.403 3.597 4 O -0.467 6.467 5 N -0.401 5.401 6 C 0.007 3.993 7 C -0.023 4.023 8 N -0.884 5.884 9 S 2.677 3.323 10 O -0.951 6.951 11 O -0.951 6.951 12 C -0.649 4.649 13 C -0.244 4.244 14 C -0.087 4.087 15 C -0.245 4.245 16 C 0.114 3.886 17 C -0.477 4.477 18 H 0.101 0.899 19 C -0.146 4.146 20 N -0.405 5.405 21 Si 0.737 3.263 22 H -0.185 1.185 23 H -0.202 1.202 24 H -0.188 1.188 25 C -0.186 4.186 26 C -0.100 4.100 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.232 0.768 31 H 0.233 0.767 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.247 0.753 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.114 0.886 40 H 0.117 0.883 41 H 0.096 0.904 42 H 0.141 0.859 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -19.338 -3.628 -1.064 19.704 hybrid contribution 0.868 -1.018 -0.482 1.422 sum -18.470 -4.645 -1.546 19.108 Atomic orbital electron populations 1.21402 0.78017 1.02026 1.02343 1.44910 1.07865 1.07139 1.80801 1.15907 0.81603 0.84357 0.77859 1.90948 1.67820 1.30346 1.57553 1.44926 1.04796 1.09771 1.80593 1.21328 0.89302 0.85225 1.03494 1.21334 0.91586 0.86457 1.02875 1.55861 1.29315 1.14061 1.89200 1.06689 0.72334 0.75656 0.77581 1.93530 1.84816 1.75283 1.41497 1.93546 1.81530 1.32362 1.87703 1.28908 1.06137 1.13195 1.16637 1.18092 0.89006 1.02515 1.14816 1.20483 0.94051 0.96157 0.98054 1.20989 0.93774 1.02927 1.06823 1.17740 0.93412 0.90313 0.87164 1.19725 0.92889 0.94301 1.40748 0.89883 1.26018 1.00612 0.95004 0.92952 1.69807 1.38752 0.99004 1.32970 0.86273 0.81057 0.78252 0.80708 1.18545 1.20164 1.18792 1.21325 0.91460 1.01994 1.03852 1.20594 0.95621 0.96017 0.97766 0.92328 0.92352 0.90604 0.76831 0.76670 0.90560 0.90703 0.91177 0.89553 0.75286 0.85956 0.86214 0.88606 0.88299 0.90396 0.85933 0.88704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.58 10.70 59.85 0.64 1.22 16 2 N -0.75 -4.71 5.72 -72.07 -0.41 -5.13 16 3 C 0.70 6.96 8.57 -86.92 -0.74 6.22 16 4 O -0.59 -8.50 16.34 5.29 0.09 -8.42 16 5 N -0.74 -5.56 5.56 -65.22 -0.36 -5.92 16 6 C 0.13 1.13 5.82 -4.04 -0.02 1.10 16 7 C 0.11 0.89 6.25 -4.04 -0.03 0.87 16 8 N -1.13 -12.18 5.89 -10.61 -0.06 -12.25 16 9 S 2.58 40.88 5.44 -107.50 -0.59 40.29 16 10 O -0.96 -18.39 17.50 -57.54 -1.01 -19.40 16 11 O -0.96 -18.49 18.08 -57.54 -1.04 -19.53 16 12 C -0.52 -7.89 6.19 36.01 0.22 -7.67 16 13 C -0.24 -5.00 5.16 -104.32 -0.54 -5.54 16 14 C -0.07 -1.49 9.67 -39.66 -0.38 -1.87 16 15 C -0.23 -5.40 9.80 -38.88 -0.38 -5.78 16 16 C 0.12 3.03 5.57 -106.83 -0.60 2.44 16 17 C -0.45 -11.38 9.05 -37.74 -0.34 -11.72 16 18 H 0.08 2.01 7.91 -52.48 -0.41 1.59 16 19 C 0.07 1.77 5.14 -17.34 -0.09 1.68 16 20 N -0.78 -19.13 10.95 55.55 0.61 -18.52 16 21 Si 0.91 17.78 29.59 -169.99 -5.03 12.75 16 22 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 23 H -0.28 -5.23 7.11 56.52 0.40 -4.83 16 24 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 25 C -0.17 -4.21 8.70 -38.87 -0.34 -4.54 16 26 C -0.08 -1.82 9.67 -39.66 -0.38 -2.20 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.40 1.23 8.84 -40.82 -0.36 0.87 16 31 H 0.40 1.75 8.49 -40.82 -0.35 1.41 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.09 0.76 7.69 -51.93 -0.40 0.36 16 36 H 0.41 3.81 8.62 -34.47 -0.30 3.51 16 37 H 0.12 1.55 8.08 -51.93 -0.42 1.13 16 38 H 0.12 1.48 8.08 -51.92 -0.42 1.06 16 39 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 40 H 0.10 2.20 8.06 -52.48 -0.42 1.78 16 41 H 0.28 6.31 8.30 -40.82 -0.34 5.97 16 42 H 0.12 3.15 6.16 -52.48 -0.32 2.83 16 43 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 LS Contribution 381.86 15.07 5.75 5.75 Total: -1.00 -35.75 381.86 -10.95 -46.70 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -5.92 Total: 9.47 kcal Atomic # 6 Polarization: -22.82 SS G_CDS: -2.98 Total: -25.80 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: -0.23 Total: -41.82 kcal Atomic # 8 Polarization: -45.39 SS G_CDS: -1.96 Total: -47.35 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -5.03 Total: 12.75 kcal Atomic # 16 Polarization: 40.88 SS G_CDS: -0.59 Total: 40.29 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.75 -10.95 -46.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662673207.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.683 kcal (2) G-P(sol) polarization free energy of solvation -35.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds