Wall clock time and date at job start Sat Apr 11 2020 06:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42109 * 110.54141 * 2 1 4 4 O 1.42098 * 110.54522 * 223.25002 * 2 1 3 5 5 N 1.65593 * 104.44818 * 111.62421 * 2 1 3 6 6 C 1.46504 * 120.00057 * 65.00155 * 5 2 1 7 7 C 1.53003 * 109.47204 * 165.00052 * 6 5 2 8 8 C 1.52994 * 109.47120 * 179.97438 * 7 6 5 9 9 N 1.46494 * 109.47395 * 179.97438 * 8 7 6 10 10 C 1.34779 * 120.00343 * 179.97438 * 9 8 7 11 11 O 1.21588 * 120.00022 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99980 * 179.97438 * 10 9 8 13 13 C 1.39959 * 119.99583 * 174.29043 * 12 10 9 14 14 C 1.39290 * 119.94307 * 145.42670 * 13 12 10 15 15 C 1.38488 * 120.42403 * 179.97438 * 14 13 12 16 16 C 1.37683 * 120.32542 * 0.29743 * 15 14 13 17 17 C 1.40749 * 119.87885 * 359.43258 * 16 15 14 18 18 C 1.41410 * 120.20531 * 180.31234 * 17 16 15 19 19 H 1.08000 * 119.99443 * 214.42379 * 18 17 16 20 20 C 1.39932 * 120.00288 * 34.42826 * 18 17 16 21 21 N 1.30833 * 119.99587 * 5.53272 * 20 18 17 22 22 Si 1.86795 * 120.00024 * 185.53626 * 20 18 17 23 23 H 1.48502 * 109.47109 * 59.99658 * 22 20 18 24 24 H 1.48500 * 109.47249 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.46905 * 299.99776 * 22 20 18 26 26 C 1.38236 * 119.94514 * 325.39533 * 13 12 10 27 27 H 1.09003 * 109.47147 * 308.37711 * 1 2 3 28 28 H 1.09001 * 109.46980 * 68.36995 * 1 2 3 29 29 H 1.08995 * 109.47127 * 188.37606 * 1 2 3 30 30 H 0.97003 * 120.00305 * 244.99773 * 5 2 1 31 31 H 1.08995 * 109.47242 * 44.99814 * 6 5 2 32 32 H 1.09006 * 109.46890 * 284.99875 * 6 5 2 33 33 H 1.08995 * 109.47215 * 59.99745 * 7 6 5 34 34 H 1.08997 * 109.46759 * 300.00247 * 7 6 5 35 35 H 1.09008 * 109.47421 * 59.99690 * 8 7 6 36 36 H 1.08999 * 109.47175 * 300.00179 * 8 7 6 37 37 H 0.97007 * 120.00091 * 359.97438 * 9 8 7 38 38 H 0.96995 * 120.00130 * 354.29199 * 12 10 9 39 39 H 1.07995 * 119.78747 * 359.97438 * 14 13 12 40 40 H 1.08001 * 119.83503 * 180.02562 * 15 14 13 41 41 H 1.07995 * 120.05688 * 179.69942 * 16 15 14 42 42 H 0.97001 * 119.99616 * 179.97438 * 21 20 18 43 43 H 1.07995 * 120.15986 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9117 5 7 2.2272 -0.5909 1.4907 6 6 1.8907 -1.9706 1.8507 7 6 2.6875 -2.3830 3.0902 8 6 2.3356 -3.8236 3.4665 9 7 3.0989 -4.2188 4.6528 10 6 2.9499 -5.4548 5.1692 11 8 2.1823 -6.2420 4.6502 12 7 3.6525 -5.8184 6.2604 13 6 3.4114 -7.0562 6.8674 14 6 4.4623 -7.7625 7.4478 15 6 4.2349 -8.9879 8.0516 16 6 2.9673 -9.5246 8.0794 17 6 1.8946 -8.8196 7.5020 18 6 0.5887 -9.3613 7.5325 19 1 -0.0860 -9.1907 6.7066 20 6 0.1706 -10.1183 8.6327 21 7 0.9468 -10.2347 9.6794 22 14 -1.4954 -10.9625 8.6066 23 1 -1.5479 -11.9192 7.4721 24 1 -1.6987 -11.6959 9.8818 25 1 -2.5639 -9.9440 8.4451 26 6 2.1305 -7.5755 6.8906 27 1 -0.3633 0.6380 0.8056 28 1 -0.3633 0.3788 -0.9553 29 1 -0.3633 -1.0167 0.1497 30 1 2.6920 -0.0236 2.1256 31 1 2.1393 -2.6333 1.0219 32 1 0.8241 -2.0405 2.0646 33 1 2.4389 -1.7203 3.9190 34 1 3.7540 -2.3131 2.8763 35 1 2.5839 -4.4867 2.6377 36 1 1.2691 -3.8931 3.6804 37 1 3.7116 -3.5908 5.0668 38 1 4.3253 -5.2223 6.6249 39 1 5.4610 -7.3519 7.4267 40 1 5.0567 -9.5272 8.4990 41 1 2.7957 -10.4827 8.5471 42 1 0.6569 -10.7591 10.4422 43 1 1.3149 -7.0282 6.4417 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671460247.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:30 Heat of formation + Delta-G solvation = -82.411452 kcal Electronic energy + Delta-G solvation = -25917.668828 eV Core-core repulsion = 21896.793712 eV Total energy + Delta-G solvation = -4020.875116 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.95878 -37.70563 -37.49848 -36.80919 -36.38690 -34.71824 -34.27535 -32.97300 -31.00560 -29.98699 -29.76465 -27.99400 -25.39095 -25.13192 -22.37610 -21.60966 -20.83855 -20.05945 -19.86567 -18.21618 -17.88741 -17.49873 -16.97307 -16.77856 -16.07541 -15.87641 -15.39204 -15.14349 -14.80864 -14.56786 -14.31564 -14.07450 -13.84145 -13.72461 -13.44911 -13.14391 -12.96664 -12.81344 -12.55904 -12.45314 -12.18952 -12.03304 -11.82715 -11.69181 -11.60130 -11.44613 -11.13370 -11.08252 -10.91539 -10.44998 -10.20632 -10.01387 -9.66961 -9.44301 -9.20895 -8.97164 -8.94422 -7.33996 -6.86042 -6.57900 -4.31933 -0.22425 2.19266 2.74186 2.88697 3.02325 3.12488 3.16800 3.23665 3.32400 3.70733 3.70939 4.02976 4.19065 4.32238 4.42756 4.50906 4.58487 4.59947 4.75394 5.02083 5.11397 5.17449 5.19244 5.47686 5.69763 5.73998 5.79802 6.24169 6.38864 6.43243 6.51154 6.77286 6.80093 7.05656 7.12436 7.27780 7.36647 7.72144 7.82044 7.99698 8.15982 8.27814 8.43404 8.71234 8.93151 9.02020 9.05001 10.35877 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018451 B = 0.001749 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.153664 B =16009.022593 C =17217.619634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.674 4.674 2 S 2.616 3.384 3 O -0.961 6.961 4 O -0.955 6.955 5 N -1.120 6.120 6 C 0.115 3.885 7 C -0.137 4.137 8 C 0.140 3.860 9 N -0.752 5.752 10 C 0.698 3.302 11 O -0.565 6.565 12 N -0.681 5.681 13 C 0.163 3.837 14 C -0.252 4.252 15 C -0.097 4.097 16 C -0.159 4.159 17 C 0.120 3.880 18 C -0.464 4.464 19 H 0.076 0.924 20 C 0.072 3.928 21 N -0.812 5.812 22 Si 0.912 3.088 23 H -0.265 1.265 24 H -0.280 1.280 25 H -0.267 1.267 26 C -0.200 4.200 27 H 0.129 0.871 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.418 0.582 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.393 0.607 38 H 0.394 0.606 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.118 0.882 42 H 0.278 0.722 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.903 19.942 -12.129 23.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.824 4.824 2 S 2.708 3.292 3 O -0.952 6.952 4 O -0.945 6.945 5 N -0.880 5.880 6 C -0.011 4.011 7 C -0.177 4.177 8 C 0.014 3.986 9 N -0.410 5.410 10 C 0.398 3.602 11 O -0.441 6.441 12 N -0.328 5.328 13 C 0.071 3.929 14 C -0.274 4.274 15 C -0.116 4.116 16 C -0.179 4.179 17 C 0.117 3.883 18 C -0.495 4.495 19 H 0.094 0.906 20 C -0.143 4.143 21 N -0.439 5.439 22 Si 0.737 3.263 23 H -0.190 1.190 24 H -0.205 1.205 25 H -0.192 1.192 26 C -0.222 4.222 27 H 0.148 0.852 28 H 0.147 0.853 29 H 0.148 0.852 30 H 0.253 0.747 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.226 0.774 38 H 0.227 0.773 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.136 0.864 42 H 0.089 0.911 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.636 19.264 -13.226 23.376 hybrid contribution -0.575 0.425 1.164 1.366 sum 0.061 19.689 -12.061 23.090 Atomic orbital electron populations 1.30527 1.28303 1.11849 1.11673 1.04659 0.77557 0.73774 0.73210 1.93628 1.78037 1.37770 1.85716 1.93635 1.76961 1.61767 1.62150 1.55566 1.74412 1.21364 1.36663 1.21242 0.99427 0.81641 0.98839 1.21938 1.01528 0.96636 0.97574 1.21025 0.96411 0.93641 0.87487 1.45053 1.48999 1.14160 1.32777 1.15956 0.81686 0.81971 0.80569 1.90986 1.40070 1.51024 1.61983 1.42575 1.41273 1.19822 1.29117 1.17246 0.94121 0.84426 0.97140 1.20072 0.95518 0.98733 1.13080 1.20483 0.96676 0.94922 0.99500 1.21358 0.90992 1.00818 1.04691 1.17509 0.93269 0.89092 0.88385 1.19478 0.98286 1.28121 1.03618 0.90592 1.25841 0.99078 0.94573 0.94781 1.69774 1.36865 1.32892 1.04359 0.86307 0.82009 0.79781 0.78158 1.18997 1.20502 1.19185 1.21100 0.93914 0.97934 1.09209 0.85198 0.85293 0.85201 0.74700 0.89485 0.91178 0.90369 0.90191 0.91197 0.91226 0.77378 0.77269 0.89251 0.88954 0.86440 0.91149 0.87503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -1.77 10.89 101.05 1.10 -0.67 16 2 S 2.62 14.97 6.10 -107.50 -0.66 14.31 16 3 O -0.96 -8.91 18.08 -57.54 -1.04 -9.95 16 4 O -0.96 -9.42 17.50 -57.54 -1.01 -10.42 16 5 N -1.12 -4.86 5.89 -10.61 -0.06 -4.92 16 6 C 0.12 0.54 6.13 -4.04 -0.02 0.52 16 7 C -0.14 -0.73 5.47 -26.73 -0.15 -0.87 16 8 C 0.14 1.30 5.67 -4.05 -0.02 1.28 16 9 N -0.75 -8.53 5.56 -65.23 -0.36 -8.89 16 10 C 0.70 12.17 8.28 -86.91 -0.72 11.45 16 11 O -0.57 -12.66 14.13 5.29 0.07 -12.58 16 12 N -0.68 -11.86 5.34 -14.27 -0.08 -11.94 16 13 C 0.16 3.67 6.25 -83.76 -0.52 3.14 16 14 C -0.25 -5.50 9.97 -39.10 -0.39 -5.89 16 15 C -0.10 -2.25 10.02 -39.69 -0.40 -2.65 16 16 C -0.16 -4.17 8.62 -38.84 -0.33 -4.51 16 17 C 0.12 3.32 5.50 -106.85 -0.59 2.73 16 18 C -0.46 -12.84 9.04 -37.74 -0.34 -13.19 16 19 H 0.08 2.07 7.85 -52.49 -0.41 1.66 16 20 C 0.07 1.88 5.31 -17.34 -0.09 1.79 16 21 N -0.81 -21.47 10.97 55.55 0.61 -20.86 16 22 Si 0.91 19.44 29.56 -169.99 -5.03 14.41 16 23 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 24 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 25 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 26 C -0.20 -5.19 8.39 -38.69 -0.32 -5.51 16 27 H 0.13 0.18 8.14 -51.92 -0.42 -0.24 16 28 H 0.13 0.23 8.14 -51.92 -0.42 -0.19 16 29 H 0.13 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.42 1.29 8.62 -34.47 -0.30 0.99 16 31 H 0.09 0.47 7.69 -51.93 -0.40 0.07 16 32 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 33 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.73 8.14 -51.92 -0.42 0.30 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.39 3.09 8.49 -40.82 -0.35 2.75 16 38 H 0.39 5.17 8.84 -40.82 -0.36 4.81 16 39 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 40 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 41 H 0.12 3.18 6.48 -52.49 -0.34 2.84 16 42 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 43 H 0.11 2.87 6.51 -52.49 -0.34 2.52 16 LS Contribution 378.02 15.07 5.70 5.70 Total: -1.00 -38.45 378.02 -10.51 -48.97 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -5.86 Total: 8.56 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: -2.80 Total: -12.38 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: 0.11 Total: -46.61 kcal Atomic # 8 Polarization: -30.98 SS G_CDS: -1.97 Total: -32.95 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.03 Total: 14.41 kcal Atomic # 16 Polarization: 14.97 SS G_CDS: -0.66 Total: 14.31 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -38.45 -10.51 -48.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671460247.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.446 kcal (2) G-P(sol) polarization free energy of solvation -38.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds