Wall clock time and date at job start Sat Apr 11 2020 06:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42094 * 108.58362 * 2 1 4 4 O 1.42104 * 108.57731 * 228.96969 * 2 1 3 5 5 C 1.81404 * 101.92210 * 114.48618 * 2 1 3 6 6 C 1.53006 * 109.47068 * 179.97438 * 5 2 1 7 7 C 1.53002 * 109.46733 * 180.02562 * 6 5 2 8 8 C 1.53006 * 109.46733 * 180.02562 * 7 6 5 9 9 N 1.46497 * 109.47111 * 180.02562 * 8 7 6 10 10 C 1.34777 * 120.00152 * 180.02562 * 9 8 7 11 11 O 1.21578 * 119.99929 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99905 * 179.97438 * 10 9 8 13 13 C 1.39246 * 119.99674 * 185.63604 * 12 10 9 14 14 C 1.39684 * 119.57239 * 174.99887 * 13 12 10 15 15 C 1.38644 * 119.49313 * 180.02562 * 14 13 12 16 16 C 1.38354 * 118.67381 * 359.73271 * 15 14 13 17 17 C 1.40583 * 119.12777 * 0.53370 * 16 15 14 18 18 C 1.41331 * 119.78539 * 179.72859 * 17 16 15 19 19 H 1.07997 * 120.00366 * 6.09511 * 18 17 16 20 20 C 1.40023 * 119.99644 * 186.09085 * 18 17 16 21 21 N 1.30747 * 120.00194 * 6.11359 * 20 18 17 22 22 Si 1.86803 * 119.99889 * 186.10995 * 20 18 17 23 23 H 1.48501 * 109.47252 * 265.00384 * 22 20 18 24 24 H 1.48505 * 109.47076 * 25.00473 * 22 20 18 25 25 H 1.48507 * 109.47147 * 145.00244 * 22 20 18 26 26 N 1.31907 * 119.57661 * 355.02284 * 13 12 10 27 27 H 1.09003 * 109.46973 * 305.51595 * 1 2 3 28 28 H 1.08989 * 109.47111 * 65.51504 * 1 2 3 29 29 H 1.09000 * 109.46839 * 185.51640 * 1 2 3 30 30 H 1.09002 * 109.47272 * 60.00084 * 5 2 1 31 31 H 1.09000 * 109.47253 * 299.99601 * 5 2 1 32 32 H 1.08994 * 109.47068 * 59.99731 * 6 5 2 33 33 H 1.09000 * 109.46841 * 299.99955 * 6 5 2 34 34 H 1.09002 * 109.47461 * 60.00274 * 7 6 5 35 35 H 1.08994 * 109.47041 * 299.99351 * 7 6 5 36 36 H 1.08994 * 109.47068 * 59.99704 * 8 7 6 37 37 H 1.09000 * 109.46841 * 299.99928 * 8 7 6 38 38 H 0.97002 * 119.99743 * 359.97438 * 9 8 7 39 39 H 0.96998 * 120.00240 * 5.63424 * 12 10 9 40 40 H 1.07999 * 120.25476 * 0.02562 * 14 13 12 41 41 H 1.08004 * 120.66416 * 180.02562 * 15 14 13 42 42 H 1.08000 * 120.44068 * 180.25793 * 16 15 14 43 43 H 0.97002 * 119.99518 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1887 -0.7357 1.6153 6 6 3.7055 -0.8195 1.7979 7 6 4.0215 -1.4406 3.1601 8 6 5.5383 -1.5239 3.3430 9 7 5.8410 -2.1191 4.6469 10 6 7.1222 -2.2922 5.0277 11 8 8.0268 -1.9548 4.2888 12 7 7.4006 -2.8394 6.2275 13 6 8.7185 -2.9109 6.6711 14 6 8.9882 -3.3827 7.9579 15 6 10.3010 -3.4528 8.3981 16 6 11.3110 -3.0552 7.5401 17 6 10.9746 -2.5842 6.2589 18 6 11.9948 -2.1691 5.3733 19 1 13.0318 -2.3056 5.6421 20 6 11.6609 -1.5810 4.1472 21 7 10.4125 -1.3064 3.8723 22 14 12.9992 -1.1885 2.9044 23 1 13.4236 0.2256 3.0639 24 1 14.1627 -2.0832 3.1308 25 1 12.4751 -1.3962 1.5305 26 7 9.6963 -2.5318 5.8710 27 1 -0.3633 0.5970 0.8365 28 1 -0.3633 0.4259 -0.9351 29 1 -0.3633 -1.0229 0.0988 30 1 1.7611 -1.7370 1.6665 31 1 1.7611 -0.1170 2.4043 32 1 4.1336 0.1815 1.7465 33 1 4.1328 -1.4384 1.0089 34 1 3.5935 -2.4418 3.2110 35 1 3.5942 -0.8221 3.9493 36 1 5.9659 -0.5227 3.2921 37 1 5.9660 -2.1422 2.5537 38 1 5.1192 -2.3880 5.2366 39 1 6.6829 -3.1833 6.7821 40 1 8.1802 -3.6906 8.6050 41 1 10.5311 -3.8149 9.3892 42 1 12.3439 -3.1018 7.8520 43 1 10.1814 -0.8986 3.0230 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672719616.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:34 Heat of formation + Delta-G solvation = -77.718507 kcal Electronic energy + Delta-G solvation = -26549.622509 eV Core-core repulsion = 22528.950894 eV Total energy + Delta-G solvation = -4020.671615 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.10840 -39.54507 -37.95196 -37.27976 -36.94549 -35.86218 -34.83067 -34.60824 -32.20025 -31.17435 -30.41486 -29.62319 -27.42788 -25.13934 -23.60405 -22.97586 -22.40495 -21.33346 -19.77722 -19.72067 -18.73810 -18.03543 -17.42297 -17.29278 -16.96853 -16.65156 -16.57052 -16.25253 -15.95252 -15.82172 -15.60817 -14.79934 -14.65260 -14.61354 -14.06399 -13.89698 -13.85059 -13.72550 -13.63092 -13.33816 -13.09526 -12.99162 -12.92866 -12.70160 -12.65047 -12.55557 -12.30495 -12.26944 -11.91599 -11.79560 -11.68432 -11.44302 -11.25713 -10.87057 -10.83462 -9.92400 -9.80697 -9.09437 -8.76846 -8.06638 -6.38513 -0.86805 0.97997 1.29824 1.39243 1.51571 1.54466 1.83299 1.96017 2.26895 2.58427 2.80056 3.04121 3.17832 3.40769 3.62631 3.87075 4.08693 4.13408 4.18167 4.22048 4.26948 4.35486 4.39003 4.70497 4.71502 4.73869 4.76787 4.86388 4.98568 4.99470 5.02735 5.08714 5.21406 5.24496 5.30455 5.67923 5.72587 5.88206 5.94177 6.06471 6.34228 6.44978 6.83857 7.08632 7.30470 8.03425 8.39495 8.58345 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014256 B = 0.002222 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.651482 B =12599.803998 C =14357.735500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.634 4.634 2 S 2.410 3.590 3 O -0.996 6.996 4 O -0.996 6.996 5 C -0.590 4.590 6 C -0.125 4.125 7 C -0.105 4.105 8 C 0.137 3.863 9 N -0.735 5.735 10 C 0.655 3.345 11 O -0.522 6.522 12 N -0.660 5.660 13 C 0.363 3.637 14 C -0.344 4.344 15 C -0.033 4.033 16 C -0.332 4.332 17 C 0.238 3.762 18 C -0.468 4.468 19 H 0.086 0.914 20 C 0.011 3.989 21 N -0.690 5.690 22 Si 0.974 3.026 23 H -0.264 1.264 24 H -0.255 1.255 25 H -0.277 1.277 26 N -0.510 5.510 27 H 0.155 0.845 28 H 0.131 0.869 29 H 0.155 0.845 30 H 0.167 0.833 31 H 0.167 0.833 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.041 0.959 37 H 0.042 0.958 38 H 0.408 0.592 39 H 0.418 0.582 40 H 0.134 0.866 41 H 0.138 0.862 42 H 0.104 0.896 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.310 0.107 -2.334 26.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.787 4.787 2 S 2.599 3.401 3 O -0.993 6.993 4 O -0.993 6.993 5 C -0.721 4.721 6 C -0.164 4.164 7 C -0.143 4.143 8 C 0.012 3.988 9 N -0.395 5.395 10 C 0.353 3.647 11 O -0.390 6.390 12 N -0.311 5.311 13 C 0.123 3.877 14 C -0.370 4.370 15 C -0.057 4.057 16 C -0.355 4.355 17 C 0.112 3.888 18 C -0.499 4.499 19 H 0.104 0.896 20 C -0.214 4.214 21 N -0.309 5.309 22 Si 0.795 3.205 23 H -0.189 1.189 24 H -0.179 1.179 25 H -0.202 1.202 26 N -0.229 5.229 27 H 0.173 0.827 28 H 0.149 0.851 29 H 0.174 0.826 30 H 0.185 0.815 31 H 0.184 0.816 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.244 0.756 39 H 0.256 0.744 40 H 0.152 0.848 41 H 0.156 0.844 42 H 0.122 0.878 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -25.242 1.188 -4.780 25.718 hybrid contribution -0.047 -0.564 1.225 1.349 sum -25.288 0.624 -3.555 25.545 Atomic orbital electron populations 1.30058 1.21419 1.13990 1.13229 1.07702 0.80147 0.74165 0.78074 1.93546 1.81199 1.37093 1.87470 1.93546 1.81204 1.67653 1.56875 1.30158 1.03879 1.16383 1.21665 1.21303 0.93065 1.02767 0.99290 1.21644 0.91978 1.03544 0.97165 1.21153 0.97161 0.96964 0.83496 1.44937 1.04853 1.68755 1.20999 1.16777 0.84410 0.80692 0.82841 1.91359 1.44233 1.51628 1.51830 1.42372 1.06292 1.63032 1.19443 1.18859 0.85686 0.93106 0.90070 1.20926 0.97806 1.21363 0.96890 1.21032 0.92000 0.94400 0.98276 1.21809 0.98990 1.17363 0.97305 1.18878 0.89853 0.89103 0.90932 1.19868 0.93617 1.34986 1.01461 0.89631 1.27022 0.98274 0.95405 1.00729 1.70467 1.17987 1.21640 1.20767 0.85335 0.78768 0.79366 0.77058 1.18857 1.17873 1.20185 1.68585 0.98912 1.22276 1.33111 0.82658 0.85073 0.82634 0.81496 0.81553 0.91017 0.90930 0.88590 0.88744 0.94080 0.93923 0.75592 0.74412 0.84808 0.84378 0.87790 0.92057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -0.67 10.62 113.37 1.20 0.53 16 2 S 2.41 27.23 5.36 -56.49 -0.30 26.93 16 3 O -1.00 -21.51 18.10 -127.37 -2.30 -23.81 16 4 O -1.00 -21.38 18.10 -127.37 -2.31 -23.69 16 5 C -0.59 -3.07 5.81 71.98 0.42 -2.65 16 6 C -0.13 -1.79 5.22 30.60 0.16 -1.63 16 7 C -0.10 -1.43 5.33 30.60 0.16 -1.26 16 8 C 0.14 3.57 5.67 86.38 0.49 4.06 16 9 N -0.73 -20.39 5.56 -478.55 -2.66 -23.05 16 10 C 0.65 27.28 8.52 179.05 1.53 28.81 16 11 O -0.52 -28.46 12.23 -3.96 -0.05 -28.51 16 12 N -0.66 -25.72 5.39 -322.12 -1.74 -27.46 16 13 C 0.36 17.91 7.43 133.26 0.99 18.90 16 14 C -0.34 -14.76 9.95 22.72 0.23 -14.53 16 15 C -0.03 -1.44 10.15 22.39 0.23 -1.22 16 16 C -0.33 -17.10 9.83 22.87 0.22 -16.87 16 17 C 0.24 14.13 6.53 40.19 0.26 14.40 16 18 C -0.47 -27.53 9.13 23.46 0.21 -27.32 16 19 H 0.09 4.70 7.85 -2.91 -0.02 4.68 16 20 C 0.01 0.64 5.48 85.29 0.47 1.10 16 21 N -0.69 -41.47 9.19 21.84 0.20 -41.27 16 22 Si 0.97 42.50 29.56 68.60 2.03 44.53 16 23 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 24 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 25 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 26 N -0.51 -30.16 5.77 -186.36 -1.08 -31.24 16 27 H 0.16 -0.58 8.14 -2.39 -0.02 -0.60 16 28 H 0.13 0.23 8.14 -2.40 -0.02 0.21 16 29 H 0.16 -0.59 8.14 -2.39 -0.02 -0.61 16 30 H 0.17 -0.21 8.14 -2.39 -0.02 -0.22 16 31 H 0.17 -0.18 8.14 -2.39 -0.02 -0.20 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.04 1.29 8.14 -2.39 -0.02 1.28 16 38 H 0.41 7.39 8.49 -92.71 -0.79 6.60 16 39 H 0.42 11.49 8.72 -92.71 -0.81 10.68 16 40 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 41 H 0.14 4.81 8.06 -2.91 -0.02 4.78 16 42 H 0.10 5.00 8.06 -2.91 -0.02 4.98 16 43 H 0.27 15.35 8.29 -92.71 -0.77 14.58 16 Total: -1.00 -98.39 377.34 -2.18 -100.57 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: -0.55 Total: 24.67 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 6.57 Total: 2.32 kcal Atomic # 7 Polarization: -117.74 SS G_CDS: -5.27 Total: -123.01 kcal Atomic # 8 Polarization: -71.35 SS G_CDS: -4.66 Total: -76.01 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Atomic # 16 Polarization: 27.23 SS G_CDS: -0.30 Total: 26.93 kcal Total: -98.39 -2.18 -100.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672719616.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.851 kcal (2) G-P(sol) polarization free energy of solvation -98.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds