Wall clock time and date at job start Sat Apr 11 2020 06:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35968 * 116.99918 * 2 1 4 4 C 1.37565 * 120.82596 * 180.30054 * 3 2 1 5 5 C 1.38043 * 114.24831 * 180.26879 * 4 3 2 6 6 C 1.47109 * 127.75868 * 179.80220 * 5 4 3 7 7 O 1.21636 * 119.99921 * 41.50842 * 6 5 4 8 8 N 1.34776 * 120.00178 * 221.50028 * 6 5 4 9 9 C 1.46925 * 120.62959 * 356.30882 * 8 6 5 10 10 C 1.53194 * 108.77910 * 126.36392 * 9 8 6 11 11 C 1.53042 * 109.33959 * 54.61611 * 10 9 8 12 12 C 1.53037 * 109.53785 * 298.68907 * 11 10 9 13 13 C 1.52997 * 109.49698 * 181.28578 * 12 11 10 14 14 O 1.42895 * 109.47531 * 180.12499 * 13 12 11 15 15 N 1.46507 * 109.46712 * 301.35744 * 12 11 10 16 16 C 1.36935 * 119.99952 * 179.85463 * 15 12 11 17 17 H 1.08001 * 119.99990 * 0.02562 * 16 15 12 18 18 C 1.38808 * 120.00171 * 180.02562 * 16 15 12 19 19 N 1.31621 * 119.99977 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 119.99866 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47234 * 90.00384 * 20 18 16 22 22 H 1.48506 * 109.47391 * 210.00021 * 20 18 16 23 23 H 1.48497 * 109.47415 * 330.00118 * 20 18 16 24 24 C 1.46925 * 120.63208 * 176.27548 * 8 6 5 25 25 S 1.77235 * 104.48055 * 359.53997 * 5 4 3 26 26 N 1.30365 * 120.82405 * 0.03420 * 3 2 1 27 27 H 1.08992 * 109.47598 * 59.99361 * 1 2 3 28 28 H 1.08999 * 109.46983 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46662 * 299.99183 * 1 2 3 30 30 H 1.07997 * 122.87394 * 0.08507 * 4 3 2 31 31 H 1.09000 * 109.58512 * 6.57262 * 9 8 6 32 32 H 1.09000 * 109.58303 * 246.15016 * 9 8 6 33 33 H 1.08994 * 109.49408 * 174.58329 * 10 9 8 34 34 H 1.08997 * 109.49509 * 294.65184 * 10 9 8 35 35 H 1.09008 * 109.45544 * 58.66885 * 11 10 9 36 36 H 1.08991 * 109.46051 * 178.62771 * 11 10 9 37 37 H 1.09004 * 109.47289 * 300.12328 * 13 12 11 38 38 H 1.08999 * 109.47471 * 60.12108 * 13 12 11 39 39 H 0.96698 * 114.00807 * 179.97438 * 14 13 12 40 40 H 0.96994 * 120.00032 * 359.86297 * 15 12 11 41 41 H 0.97007 * 119.99757 * 179.97438 * 19 18 16 42 42 H 1.09004 * 109.58826 * 353.42292 * 24 8 6 43 43 H 1.08997 * 109.58765 * 113.70699 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4189 1.3033 -0.0062 5 6 3.9006 2.5969 0.0005 6 6 5.3048 3.0353 0.0006 7 8 6.1192 2.4676 -0.7022 8 7 5.6890 4.0660 0.7794 9 6 4.7032 4.8133 1.5722 10 6 5.1600 4.8345 3.0343 11 6 6.5829 5.3925 3.1127 12 6 7.5316 4.4883 2.3225 13 6 8.9588 5.0293 2.4281 14 8 9.8438 4.1863 1.6877 15 7 7.4810 3.1304 2.8701 16 6 8.2493 2.1405 2.3179 17 1 8.8929 2.3609 1.4791 18 6 8.2011 0.8537 2.8364 19 7 8.9400 -0.0976 2.3059 20 14 7.0874 0.4724 4.2868 21 1 5.7520 0.0549 3.7892 22 1 7.6811 -0.6255 5.0915 23 1 6.9438 1.6843 5.1327 24 6 7.1017 4.4632 0.8524 25 16 2.4471 3.6111 0.0012 26 7 1.3521 2.3149 0.0007 27 1 -0.3634 0.5139 -0.8898 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 4.0643 0.4374 -0.0126 31 1 3.7310 4.3257 1.5000 32 1 4.6310 5.8342 1.1971 33 1 4.4888 5.4663 3.6159 34 1 5.1442 3.8210 3.4350 35 1 6.6028 6.3969 2.6895 36 1 6.9008 5.4313 4.1545 37 1 8.9953 6.0401 2.0218 38 1 9.2643 5.0470 3.4742 39 1 10.7679 4.4700 1.7100 40 1 6.9032 2.9325 3.6236 41 1 8.9065 -0.9968 2.6685 42 1 7.7121 3.7446 0.3054 43 1 7.2255 5.4545 0.4164 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673672497.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:39 Heat of formation + Delta-G solvation = -64.549264 kcal Electronic energy + Delta-G solvation = -29171.813929 eV Core-core repulsion = 25151.713375 eV Total energy + Delta-G solvation = -4020.100554 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.57739 -41.10700 -39.41008 -37.55665 -37.19090 -35.67489 -34.08601 -32.75827 -32.51344 -31.01650 -29.14802 -27.49430 -26.65483 -25.29058 -25.12569 -23.05618 -22.59013 -20.68471 -20.06654 -19.65463 -19.37415 -18.76669 -17.83755 -17.61582 -17.31758 -17.20740 -16.60573 -16.24218 -16.04302 -15.73105 -15.64142 -15.00377 -14.93538 -14.72875 -14.54225 -14.50781 -14.14630 -13.95991 -13.60079 -13.41581 -13.04222 -13.01620 -12.78480 -12.63886 -12.57060 -12.31340 -12.12384 -11.97946 -11.91331 -11.73316 -11.41923 -11.36269 -11.22990 -10.89456 -10.85658 -10.53152 -9.71215 -9.37806 -9.09112 -7.81720 -5.12832 -1.00594 -0.11968 0.36294 1.05751 1.28564 1.35002 1.41220 1.47052 2.00757 2.23703 2.56337 3.25210 3.38128 3.54193 3.62906 3.71679 3.85230 4.02794 4.06135 4.13482 4.25552 4.26596 4.32543 4.47255 4.48026 4.57694 4.64984 4.66099 4.73677 4.80619 4.86683 4.92050 4.99915 5.02744 5.15768 5.39721 5.41750 5.55870 5.91762 6.14391 6.28514 6.46363 6.99840 7.15523 7.33904 8.00672 8.15792 9.41169 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011821 B = 0.004850 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.010068 B = 5771.744712 C = 6916.071285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.310 6.310 3 C 0.311 3.689 4 C -0.158 4.158 5 C -0.182 4.182 6 C 0.582 3.418 7 O -0.559 6.559 8 N -0.580 5.580 9 C 0.086 3.914 10 C -0.131 4.131 11 C -0.112 4.112 12 C 0.179 3.821 13 C 0.074 3.926 14 O -0.575 6.575 15 N -0.734 5.734 16 C -0.165 4.165 17 H 0.080 0.920 18 C -0.084 4.084 19 N -0.995 5.995 20 Si 0.931 3.069 21 H -0.295 1.295 22 H -0.306 1.306 23 H -0.247 1.247 24 C 0.116 3.884 25 S 0.369 5.631 26 N -0.531 5.531 27 H 0.065 0.935 28 H 0.128 0.872 29 H 0.063 0.937 30 H 0.155 0.845 31 H 0.081 0.919 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.039 0.961 35 H 0.113 0.887 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.041 0.959 39 H 0.374 0.626 40 H 0.359 0.641 41 H 0.245 0.755 42 H 0.054 0.946 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.851 17.267 0.144 24.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.216 6.216 3 C 0.098 3.902 4 C -0.196 4.196 5 C -0.314 4.314 6 C 0.367 3.633 7 O -0.438 6.438 8 N -0.311 5.311 9 C -0.037 4.037 10 C -0.169 4.169 11 C -0.150 4.150 12 C 0.088 3.912 13 C -0.006 4.006 14 O -0.380 6.380 15 N -0.376 5.376 16 C -0.296 4.296 17 H 0.098 0.902 18 C -0.272 4.272 19 N -0.650 5.650 20 Si 0.761 3.239 21 H -0.223 1.223 22 H -0.234 1.234 23 H -0.171 1.171 24 C -0.007 4.007 25 S 0.519 5.481 26 N -0.372 5.372 27 H 0.084 0.916 28 H 0.146 0.854 29 H 0.082 0.918 30 H 0.172 0.828 31 H 0.099 0.901 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.057 0.943 35 H 0.132 0.868 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.060 0.940 39 H 0.222 0.778 40 H 0.193 0.807 41 H 0.054 0.946 42 H 0.072 0.928 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -18.246 17.907 -0.456 25.569 hybrid contribution 1.281 -2.751 0.866 3.156 sum -16.965 15.156 0.410 22.752 Atomic orbital electron populations 1.23275 0.74714 1.05574 1.02820 1.86332 1.25061 1.22332 1.87878 1.19611 0.89050 0.85814 0.95678 1.20782 0.93335 0.98585 1.06879 1.25950 1.00028 0.98782 1.06607 1.17048 0.84924 0.80340 0.81026 1.90871 1.53369 1.56046 1.43488 1.47820 1.09695 1.30604 1.42952 1.22526 0.90860 0.98332 0.91940 1.21908 0.97630 1.01766 0.95594 1.21726 0.93135 0.99246 1.00893 1.20467 0.93710 0.84928 0.92075 1.22715 0.90237 0.92734 0.94917 1.86880 1.21505 1.55149 1.74504 1.42861 1.50975 1.06247 1.37518 1.19247 1.13410 0.87536 1.09430 0.90197 1.25342 1.02657 0.96513 1.02707 1.69896 1.47273 1.01650 1.46146 0.85733 0.78795 0.77900 0.81430 1.22312 1.23402 1.17135 1.22088 0.79514 1.00154 0.98973 1.84371 0.85945 1.09834 1.67996 1.76267 1.27568 1.01620 1.31784 0.91645 0.85355 0.91787 0.82782 0.90118 0.86109 0.86160 0.94264 0.86833 0.90310 0.90901 0.94032 0.77831 0.80703 0.94611 0.92778 0.88708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.43 113.37 1.18 1.73 16 2 O -0.31 -8.58 10.51 -93.19 -0.98 -9.56 16 3 C 0.31 9.32 7.36 84.75 0.62 9.94 16 4 C -0.16 -5.49 10.26 22.06 0.23 -5.27 16 5 C -0.18 -6.03 5.82 24.55 0.14 -5.89 16 6 C 0.58 23.09 7.64 86.57 0.66 23.75 16 7 O -0.56 -28.55 16.53 -4.15 -0.07 -28.62 16 8 N -0.58 -18.64 2.89 -823.15 -2.38 -21.02 16 9 C 0.09 1.77 5.99 86.36 0.52 2.29 16 10 C -0.13 -2.61 5.91 30.67 0.18 -2.43 16 11 C -0.11 -2.29 4.76 30.62 0.15 -2.15 16 12 C 0.18 5.76 0.68 3.68 0.00 5.77 16 13 C 0.07 2.19 6.08 71.98 0.44 2.63 16 14 O -0.57 -21.90 10.11 -148.98 -1.51 -23.41 16 15 N -0.73 -32.48 4.55 -303.00 -1.38 -33.86 16 16 C -0.16 -9.47 8.70 84.03 0.73 -8.74 16 17 H 0.08 5.21 5.51 -2.91 -0.02 5.20 16 18 C -0.08 -5.23 5.50 84.86 0.47 -4.76 16 19 N -1.00 -68.70 13.97 21.65 0.30 -68.40 16 20 Si 0.93 48.20 27.74 68.60 1.90 50.10 16 21 H -0.30 -15.44 7.11 99.48 0.71 -14.73 16 22 H -0.31 -16.36 7.11 99.48 0.71 -15.65 16 23 H -0.25 -11.12 6.52 99.48 0.65 -10.47 16 24 C 0.12 3.99 4.84 86.36 0.42 4.41 16 25 S 0.37 8.42 20.79 -56.49 -1.17 7.24 16 26 N -0.53 -14.01 11.03 -175.20 -1.93 -15.94 16 27 H 0.06 1.11 8.12 -2.39 -0.02 1.09 16 28 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 30 H 0.15 5.93 8.06 -2.91 -0.02 5.90 16 31 H 0.08 1.63 3.87 -16.64 -0.06 1.57 16 32 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.04 1.07 6.75 -2.39 -0.02 1.05 16 35 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16 36 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 38 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.37 10.62 9.12 -74.06 -0.68 9.94 16 40 H 0.36 15.64 4.29 -92.71 -0.40 15.24 16 41 H 0.24 16.39 8.31 -92.70 -0.77 15.62 16 42 H 0.05 2.55 5.71 -2.39 -0.01 2.53 16 43 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -89.73 355.83 -1.59 -91.32 By element: Atomic # 1 Polarization: 30.97 SS G_CDS: -0.11 Total: 30.86 kcal Atomic # 6 Polarization: 15.55 SS G_CDS: 5.74 Total: 21.29 kcal Atomic # 7 Polarization: -133.83 SS G_CDS: -5.39 Total: -139.22 kcal Atomic # 8 Polarization: -59.03 SS G_CDS: -2.55 Total: -61.59 kcal Atomic # 14 Polarization: 48.20 SS G_CDS: 1.90 Total: 50.10 kcal Atomic # 16 Polarization: 8.42 SS G_CDS: -1.17 Total: 7.24 kcal Total: -89.73 -1.59 -91.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673672497.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.769 kcal (2) G-P(sol) polarization free energy of solvation -89.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds